Wall clock time and date at job start Sat Apr 11 2020 05:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.52397 * 2 1 4 4 C 1.53114 * 109.52500 * 239.80992 * 2 1 3 5 5 C 1.53043 * 109.27970 * 182.44333 * 4 2 1 6 6 N 1.46851 * 109.52308 * 59.17624 * 5 4 2 7 7 C 1.46897 * 110.99828 * 174.16489 * 6 5 4 8 8 N 1.46504 * 109.47048 * 293.94976 * 7 6 5 9 9 N 1.40168 * 126.14060 * 90.02433 * 8 7 6 10 10 C 1.32241 * 107.75403 * 179.97438 * 9 8 7 11 11 C 1.40122 * 125.92197 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99981 * 179.97438 * 11 10 9 13 13 C 1.40040 * 120.00137 * 359.97438 * 11 10 9 14 14 N 1.30797 * 119.99692 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 120.00016 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47245 * 89.99806 * 15 13 11 17 17 H 1.48502 * 109.47507 * 210.00287 * 15 13 11 18 18 H 1.48507 * 109.47110 * 330.00258 * 15 13 11 19 19 N 1.38496 * 108.15081 * 0.02562 * 10 9 8 20 20 C 1.46494 * 125.83667 * 179.97438 * 19 10 9 21 21 C 1.34737 * 108.32586 * 359.72845 * 19 10 9 22 22 S 1.71200 * 125.97032 * 180.26386 * 21 19 10 23 23 C 1.46855 * 111.23220 * 298.27980 * 6 5 4 24 24 C 1.53045 * 109.52011 * 61.68113 * 23 6 5 25 25 H 1.08995 * 109.49966 * 60.84739 * 24 23 6 26 26 C 1.50700 * 109.49977 * 180.92014 * 24 23 6 27 27 O 1.20822 * 119.99958 * 119.92088 * 26 24 23 28 28 O 1.34234 * 120.00068 * 299.92280 * 26 24 23 29 29 H 1.08994 * 109.47190 * 299.87657 * 1 2 3 30 30 H 1.09005 * 109.46282 * 59.87569 * 1 2 3 31 31 H 1.09001 * 109.46925 * 179.86880 * 1 2 3 32 32 H 1.09006 * 109.50328 * 302.37922 * 4 2 1 33 33 H 1.08991 * 109.50827 * 62.45966 * 4 2 1 34 34 H 1.08993 * 109.46100 * 179.19349 * 5 4 2 35 35 H 1.08996 * 109.45754 * 299.16244 * 5 4 2 36 36 H 1.08996 * 109.47528 * 53.95229 * 7 6 5 37 37 H 1.09003 * 109.46852 * 173.95816 * 7 6 5 38 38 H 0.97003 * 119.99577 * 179.97438 * 14 13 11 39 39 H 1.09008 * 109.47358 * 89.99927 * 20 19 10 40 40 H 1.09000 * 109.47263 * 209.99407 * 20 19 10 41 41 H 1.09003 * 109.47411 * 330.00021 * 20 19 10 42 42 H 1.09001 * 109.42625 * 301.68855 * 23 6 5 43 43 H 1.08992 * 109.49576 * 181.71678 * 23 6 5 44 44 H 0.96698 * 117.00153 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0418 -0.7257 -1.2474 5 6 3.5710 -0.7758 -1.2111 6 7 4.0103 -1.4789 0.0010 7 6 5.4671 -1.6677 0.0012 8 7 5.8418 -2.5773 -1.0844 9 7 6.1681 -2.2083 -2.3967 10 6 6.4472 -3.3125 -3.0686 11 6 6.8219 -3.3818 -4.4170 12 1 7.0292 -4.3394 -4.8713 13 6 6.9274 -2.2094 -5.1756 14 7 6.6768 -1.0496 -4.6252 15 14 7.4276 -2.3017 -6.9729 16 1 6.2145 -2.4435 -7.8177 17 1 8.1511 -1.0609 -7.3499 18 1 8.3149 -3.4744 -7.1802 19 7 6.3049 -4.3886 -2.2084 20 6 6.5201 -5.7961 -2.5526 21 6 5.9401 -3.9190 -0.9993 22 16 5.6483 -4.8621 0.3994 23 6 3.5708 -0.7753 1.2128 24 6 2.0416 -0.7243 1.2483 25 1 1.6441 -1.7390 1.2689 26 6 1.5915 0.0175 2.4804 27 8 0.9283 1.0216 2.3724 28 8 1.9274 -0.4373 3.6978 29 1 -0.3633 0.5119 0.8910 30 1 -0.3632 0.5158 -0.8889 31 1 -0.3633 -1.0277 -0.0024 32 1 1.6448 -1.7407 -1.2664 33 1 1.7157 -0.1907 -2.1392 34 1 3.9379 -1.3045 -2.0908 35 1 3.9675 0.2394 -1.2060 36 1 5.9582 -0.7057 -0.1451 37 1 5.7782 -2.0932 0.9553 38 1 6.7502 -0.2375 -5.1506 39 1 7.5615 -6.0603 -2.3683 40 1 5.8724 -6.4232 -1.9399 41 1 6.2866 -5.9524 -3.6059 42 1 3.9680 0.2398 1.2068 43 1 3.9371 -1.3033 2.0931 44 1 1.6160 0.0724 4.4583 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589355614.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:41 Heat of formation + Delta-G solvation = -12.303228 kcal Electronic energy + Delta-G solvation = -28368.883966 eV Core-core repulsion = 24448.767632 eV Total energy + Delta-G solvation = -3920.116334 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.96868 -40.71781 -38.61913 -36.38527 -35.23159 -34.08230 -33.38669 -31.31168 -30.77200 -28.80377 -27.10853 -26.60018 -24.67683 -24.08948 -22.24192 -21.92712 -21.03393 -20.75028 -19.62784 -18.14520 -17.77065 -17.02465 -16.64908 -15.91107 -15.76861 -15.69626 -15.03626 -14.85456 -14.74189 -14.47548 -14.15393 -13.93531 -13.62455 -13.41065 -13.10736 -12.59610 -12.37985 -12.27058 -12.22650 -11.89187 -11.84257 -11.66597 -11.55362 -11.41223 -11.38842 -11.08280 -10.80674 -10.69055 -10.63388 -10.52073 -10.43577 -10.15290 -10.00366 -9.56984 -9.25264 -8.91857 -8.19235 -7.09993 -6.75474 -6.65507 -5.18912 2.04993 2.32139 2.59005 2.74369 2.87990 2.91266 2.92053 3.37599 3.48472 3.61245 3.99994 4.23043 4.49195 4.67346 4.79907 4.88670 5.10523 5.20452 5.23856 5.40215 5.48713 5.49339 5.54451 5.64570 5.68757 5.75838 5.77520 5.84830 5.86204 6.02559 6.09063 6.13520 6.18222 6.22327 6.42071 6.46135 6.49295 6.54833 6.76196 6.97958 7.09662 7.14725 7.57513 7.75011 7.78867 8.19868 8.31054 9.11377 9.87346 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013154 B = 0.003621 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.125931 B = 7731.292881 C = 9216.495748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.075 4.075 3 H 0.075 0.925 4 C -0.108 4.108 5 C 0.052 3.948 6 N -0.542 5.542 7 C 0.330 3.670 8 N -0.379 5.379 9 N -0.345 5.345 10 C 0.376 3.624 11 C -0.437 4.437 12 H 0.097 0.903 13 C 0.077 3.923 14 N -0.738 5.738 15 Si 0.927 3.073 16 H -0.266 1.266 17 H -0.273 1.273 18 H -0.259 1.259 19 N -0.517 5.517 20 C 0.101 3.899 21 C 0.481 3.519 22 S -0.705 6.705 23 C 0.076 3.924 24 C -0.071 4.071 25 H 0.120 0.880 26 C 0.488 3.512 27 O -0.513 6.513 28 O -0.512 6.512 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.034 0.966 36 H 0.065 0.935 37 H 0.112 0.888 38 H 0.285 0.715 39 H 0.066 0.934 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.038 0.962 43 H 0.094 0.906 44 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.953 3.659 3.792 7.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.094 4.094 3 H 0.094 0.906 4 C -0.145 4.145 5 C -0.076 4.076 6 N -0.269 5.269 7 C 0.118 3.882 8 N -0.165 5.165 9 N -0.177 5.177 10 C 0.127 3.873 11 C -0.478 4.478 12 H 0.115 0.885 13 C -0.149 4.149 14 N -0.362 5.362 15 Si 0.751 3.249 16 H -0.191 1.191 17 H -0.198 1.198 18 H -0.183 1.183 19 N -0.219 5.219 20 C -0.043 4.043 21 C 0.113 3.887 22 S -0.580 6.580 23 C -0.053 4.053 24 C -0.090 4.090 25 H 0.138 0.862 26 C 0.330 3.670 27 O -0.401 6.401 28 O -0.323 6.323 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.116 0.884 35 H 0.052 0.948 36 H 0.083 0.917 37 H 0.130 0.870 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.108 0.892 41 H 0.102 0.898 42 H 0.057 0.943 43 H 0.112 0.888 44 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -6.475 4.038 4.220 8.720 hybrid contribution 0.569 0.820 -1.021 1.428 sum -5.905 4.858 3.199 8.289 Atomic orbital electron populations 1.22005 0.94537 1.01796 1.02948 1.21084 0.96357 0.99287 0.92648 0.90621 1.21644 0.95213 1.01130 0.96546 1.22227 0.94829 0.96854 0.93645 1.61657 1.12799 1.50218 1.02181 1.21606 0.86682 0.91514 0.88364 1.49060 1.52911 1.03116 1.11391 1.79333 1.37668 1.15375 0.85332 1.21259 0.93605 0.79727 0.92692 1.18369 1.43792 0.95734 0.89933 0.88488 1.25821 0.93453 0.94261 1.01371 1.69865 1.29990 0.98757 1.37600 0.85973 0.79608 0.79247 0.80105 1.19060 1.19818 1.18276 1.45977 1.58377 1.09208 1.08296 1.21749 1.02534 0.77961 1.02010 1.22880 0.88437 0.87284 0.90115 1.92729 1.79367 1.63130 1.22818 1.21799 0.92254 0.97229 0.94023 1.21145 0.97517 1.01315 0.89058 0.86179 1.23514 0.76059 0.82749 0.84699 1.90664 1.36882 1.25414 1.87180 1.84605 1.73290 1.57603 1.16840 0.90985 0.92521 0.92921 0.90950 0.90954 0.88404 0.94765 0.91674 0.87027 0.90379 0.91551 0.89185 0.89821 0.94341 0.88775 0.73476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 8.91 37.16 0.33 -1.47 16 2 C -0.08 -0.94 1.93 -90.50 -0.17 -1.12 16 3 H 0.08 1.00 8.04 -51.93 -0.42 0.58 16 4 C -0.11 -1.50 5.38 -26.65 -0.14 -1.65 16 5 C 0.05 0.87 5.38 -3.83 -0.02 0.85 16 6 N -0.54 -9.01 4.79 -238.57 -1.14 -10.15 16 7 C 0.33 6.09 5.92 -63.31 -0.37 5.71 16 8 N -0.38 -8.41 3.34 -65.05 -0.22 -8.63 16 9 N -0.35 -8.35 9.63 31.21 0.30 -8.05 16 10 C 0.38 8.93 7.50 -155.27 -1.16 7.76 16 11 C -0.44 -9.83 8.98 -38.20 -0.34 -10.18 16 12 H 0.10 1.97 7.11 -52.49 -0.37 1.60 16 13 C 0.08 1.68 5.50 -17.32 -0.10 1.59 16 14 N -0.74 -17.07 11.90 55.55 0.66 -16.41 16 15 Si 0.93 16.11 29.56 -169.99 -5.02 11.08 16 16 H -0.27 -4.59 7.11 56.52 0.40 -4.19 16 17 H -0.27 -4.73 7.11 56.52 0.40 -4.33 16 18 H -0.26 -4.40 7.11 56.52 0.40 -4.00 16 19 N -0.52 -11.44 3.17 -124.66 -0.39 -11.84 16 20 C 0.10 1.76 10.64 59.84 0.64 2.40 16 21 C 0.48 11.18 7.84 -86.93 -0.68 10.50 16 22 S -0.70 -17.03 29.50 -107.50 -3.17 -20.20 16 23 C 0.08 1.01 4.68 -3.83 -0.02 1.00 16 24 C -0.07 -0.88 2.30 -91.69 -0.21 -1.09 16 25 H 0.12 1.54 8.14 -51.93 -0.42 1.11 16 26 C 0.49 5.75 7.34 36.01 0.26 6.02 16 27 O -0.51 -7.06 14.58 -18.75 -0.27 -7.33 16 28 O -0.51 -4.90 13.35 -39.27 -0.52 -5.42 16 29 H 0.07 0.89 5.74 -51.93 -0.30 0.60 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.10 2.03 6.54 -51.93 -0.34 1.69 16 35 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 1.15 8.12 -51.93 -0.42 0.73 16 37 H 0.11 2.02 7.48 -51.93 -0.39 1.64 16 38 H 0.29 6.00 8.30 -40.82 -0.34 5.66 16 39 H 0.07 1.07 8.14 -51.92 -0.42 0.64 16 40 H 0.09 1.57 7.62 -51.93 -0.40 1.17 16 41 H 0.08 1.28 7.32 -51.93 -0.38 0.90 16 42 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.09 1.23 8.01 -51.93 -0.42 0.81 16 44 H 0.41 2.05 9.10 45.56 0.41 2.47 16 LS Contribution 371.94 15.07 5.61 5.61 Total: -1.00 -30.53 371.94 -11.71 -42.23 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -5.53 Total: 8.80 kcal Atomic # 6 Polarization: 22.30 SS G_CDS: -1.99 Total: 20.31 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: -0.79 Total: -55.08 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: -0.80 Total: -12.75 kcal Atomic # 14 Polarization: 16.11 SS G_CDS: -5.02 Total: 11.08 kcal Atomic # 16 Polarization: -17.03 SS G_CDS: -3.17 Total: -20.20 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.53 -11.71 -42.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589355614.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.929 kcal (2) G-P(sol) polarization free energy of solvation -30.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds