Wall clock time and date at job start Sat Apr 11 2020 05:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.52397 * 2 1 4 4 C 1.53114 * 109.52500 * 239.80992 * 2 1 3 5 5 C 1.53043 * 109.27970 * 182.44333 * 4 2 1 6 6 N 1.46851 * 109.52308 * 59.17624 * 5 4 2 7 7 C 1.46897 * 110.99828 * 174.16489 * 6 5 4 8 8 N 1.46504 * 109.47048 * 293.94976 * 7 6 5 9 9 N 1.40168 * 126.14060 * 90.02433 * 8 7 6 10 10 C 1.32241 * 107.75403 * 179.97438 * 9 8 7 11 11 C 1.40122 * 125.92197 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99981 * 179.97438 * 11 10 9 13 13 C 1.40040 * 120.00137 * 359.97438 * 11 10 9 14 14 N 1.30797 * 119.99692 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 120.00016 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47245 * 89.99806 * 15 13 11 17 17 H 1.48502 * 109.47507 * 210.00287 * 15 13 11 18 18 H 1.48507 * 109.47110 * 330.00258 * 15 13 11 19 19 N 1.38496 * 108.15081 * 0.02562 * 10 9 8 20 20 C 1.46494 * 125.83667 * 179.97438 * 19 10 9 21 21 C 1.34737 * 108.32586 * 359.72845 * 19 10 9 22 22 S 1.71200 * 125.97032 * 180.26386 * 21 19 10 23 23 C 1.46855 * 111.23220 * 298.27980 * 6 5 4 24 24 C 1.53045 * 109.52011 * 61.68113 * 23 6 5 25 25 H 1.08995 * 109.49966 * 60.84739 * 24 23 6 26 26 C 1.50700 * 109.49977 * 180.92014 * 24 23 6 27 27 O 1.20822 * 119.99958 * 119.92088 * 26 24 23 28 28 O 1.34234 * 120.00068 * 299.92280 * 26 24 23 29 29 H 1.08994 * 109.47190 * 299.87657 * 1 2 3 30 30 H 1.09005 * 109.46282 * 59.87569 * 1 2 3 31 31 H 1.09001 * 109.46925 * 179.86880 * 1 2 3 32 32 H 1.09006 * 109.50328 * 302.37922 * 4 2 1 33 33 H 1.08991 * 109.50827 * 62.45966 * 4 2 1 34 34 H 1.08993 * 109.46100 * 179.19349 * 5 4 2 35 35 H 1.08996 * 109.45754 * 299.16244 * 5 4 2 36 36 H 1.08996 * 109.47528 * 53.95229 * 7 6 5 37 37 H 1.09003 * 109.46852 * 173.95816 * 7 6 5 38 38 H 0.97003 * 119.99577 * 179.97438 * 14 13 11 39 39 H 1.09008 * 109.47358 * 89.99927 * 20 19 10 40 40 H 1.09000 * 109.47263 * 209.99407 * 20 19 10 41 41 H 1.09003 * 109.47411 * 330.00021 * 20 19 10 42 42 H 1.09001 * 109.42625 * 301.68855 * 23 6 5 43 43 H 1.08992 * 109.49576 * 181.71678 * 23 6 5 44 44 H 0.96698 * 117.00153 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0418 -0.7257 -1.2474 5 6 3.5710 -0.7758 -1.2111 6 7 4.0103 -1.4789 0.0010 7 6 5.4671 -1.6677 0.0012 8 7 5.8418 -2.5773 -1.0844 9 7 6.1681 -2.2083 -2.3967 10 6 6.4472 -3.3125 -3.0686 11 6 6.8219 -3.3818 -4.4170 12 1 7.0292 -4.3394 -4.8713 13 6 6.9274 -2.2094 -5.1756 14 7 6.6768 -1.0496 -4.6252 15 14 7.4276 -2.3017 -6.9729 16 1 6.2145 -2.4435 -7.8177 17 1 8.1511 -1.0609 -7.3499 18 1 8.3149 -3.4744 -7.1802 19 7 6.3049 -4.3886 -2.2084 20 6 6.5201 -5.7961 -2.5526 21 6 5.9401 -3.9190 -0.9993 22 16 5.6483 -4.8621 0.3994 23 6 3.5708 -0.7753 1.2128 24 6 2.0416 -0.7243 1.2483 25 1 1.6441 -1.7390 1.2689 26 6 1.5915 0.0175 2.4804 27 8 0.9283 1.0216 2.3724 28 8 1.9274 -0.4373 3.6978 29 1 -0.3633 0.5119 0.8910 30 1 -0.3632 0.5158 -0.8889 31 1 -0.3633 -1.0277 -0.0024 32 1 1.6448 -1.7407 -1.2664 33 1 1.7157 -0.1907 -2.1392 34 1 3.9379 -1.3045 -2.0908 35 1 3.9675 0.2394 -1.2060 36 1 5.9582 -0.7057 -0.1451 37 1 5.7782 -2.0932 0.9553 38 1 6.7502 -0.2375 -5.1506 39 1 7.5615 -6.0603 -2.3683 40 1 5.8724 -6.4232 -1.9399 41 1 6.2866 -5.9524 -3.6059 42 1 3.9680 0.2398 1.2068 43 1 3.9371 -1.3033 2.0931 44 1 1.6160 0.0724 4.4583 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589355614.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:41 Heat of formation + Delta-G solvation = -29.779163 kcal Electronic energy + Delta-G solvation = -28369.641779 eV Core-core repulsion = 24448.767632 eV Total energy + Delta-G solvation = -3920.874147 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.62600 -41.76650 -39.78700 -37.33976 -36.60113 -35.72659 -34.80583 -32.48103 -32.41515 -30.17997 -28.46632 -28.26352 -26.01495 -25.34161 -23.52267 -23.22033 -22.66343 -22.15907 -20.70721 -19.47426 -19.01819 -18.45954 -17.96017 -17.42182 -17.20791 -16.96629 -16.52176 -16.25916 -16.15495 -15.76070 -15.40058 -15.16945 -14.88387 -14.69627 -14.24622 -13.85549 -13.68914 -13.65609 -13.44261 -13.43043 -13.02732 -12.96148 -12.82581 -12.64285 -12.54114 -12.42876 -12.34757 -11.99523 -11.91397 -11.82388 -11.72496 -11.48009 -11.35644 -11.12509 -10.88500 -10.63844 -9.53223 -8.78771 -8.61158 -8.51681 -6.95081 0.55556 0.85597 1.12726 1.29161 1.46058 1.60584 1.68280 1.86866 2.05069 2.14291 2.44373 2.83092 3.11012 3.43860 3.55738 3.67143 3.79858 3.99595 4.08311 4.12037 4.19293 4.40410 4.41271 4.44567 4.48072 4.51427 4.56250 4.68789 4.73358 4.75104 4.76665 4.93557 4.96291 5.07845 5.08788 5.11275 5.27009 5.30522 5.32874 5.65514 5.67972 5.75766 5.97393 6.14692 6.50313 6.58954 7.00366 7.35221 8.24972 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013154 B = 0.003621 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.125931 B = 7731.292881 C = 9216.495748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.068 4.068 3 H 0.072 0.928 4 C -0.098 4.098 5 C 0.061 3.939 6 N -0.549 5.549 7 C 0.326 3.674 8 N -0.374 5.374 9 N -0.368 5.368 10 C 0.355 3.645 11 C -0.451 4.451 12 H 0.117 0.883 13 C 0.039 3.961 14 N -0.773 5.773 15 Si 1.003 2.997 16 H -0.262 1.262 17 H -0.273 1.273 18 H -0.248 1.248 19 N -0.518 5.518 20 C 0.095 3.905 21 C 0.468 3.532 22 S -0.735 6.735 23 C 0.078 3.922 24 C -0.069 4.069 25 H 0.118 0.882 26 C 0.499 3.501 27 O -0.533 6.533 28 O -0.509 6.509 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.056 0.944 35 H 0.033 0.967 36 H 0.070 0.930 37 H 0.114 0.886 38 H 0.291 0.709 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.106 0.894 42 H 0.049 0.951 43 H 0.099 0.901 44 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.208 3.765 3.076 7.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.087 4.087 3 H 0.091 0.909 4 C -0.136 4.136 5 C -0.066 4.066 6 N -0.275 5.275 7 C 0.115 3.885 8 N -0.160 5.160 9 N -0.201 5.201 10 C 0.106 3.894 11 C -0.493 4.493 12 H 0.135 0.865 13 C -0.185 4.185 14 N -0.398 5.398 15 Si 0.822 3.178 16 H -0.187 1.187 17 H -0.198 1.198 18 H -0.171 1.171 19 N -0.219 5.219 20 C -0.046 4.046 21 C 0.098 3.902 22 S -0.611 6.611 23 C -0.050 4.050 24 C -0.088 4.088 25 H 0.136 0.864 26 C 0.341 3.659 27 O -0.423 6.423 28 O -0.322 6.322 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.051 0.949 36 H 0.088 0.912 37 H 0.132 0.868 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.124 0.876 42 H 0.067 0.933 43 H 0.118 0.882 44 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -6.739 4.135 3.550 8.666 hybrid contribution 0.665 0.820 -0.766 1.305 sum -6.074 4.955 2.784 8.318 Atomic orbital electron populations 1.21938 0.93442 1.02177 1.03097 1.20993 0.97137 0.98713 0.91832 0.90924 1.21557 0.93044 1.01024 0.97935 1.22051 0.96559 0.95864 0.92173 1.61631 1.11457 1.51127 1.03325 1.21769 0.88084 0.91163 0.87450 1.49380 1.51935 1.03238 1.11421 1.79276 1.38332 1.16296 0.86169 1.21651 0.94110 0.80160 0.93455 1.18898 1.43536 0.97137 0.89685 0.86517 1.26805 0.92669 0.93446 1.05549 1.69955 1.30567 0.99699 1.39577 0.84858 0.79278 0.79423 0.74240 1.18687 1.19775 1.17122 1.46249 1.57641 1.10466 1.07558 1.22019 1.03461 0.75773 1.03348 1.22851 0.89410 0.87625 0.90327 1.92650 1.80947 1.63632 1.23895 1.21856 0.93087 0.97459 0.92584 1.21061 0.96564 1.01397 0.89801 0.86391 1.23145 0.75566 0.82091 0.85069 1.90668 1.37851 1.26176 1.87560 1.84550 1.72926 1.57813 1.16935 0.91494 0.91677 0.92426 0.91817 0.90050 0.92563 0.94888 0.91231 0.86831 0.89829 0.90080 0.89328 0.87584 0.93289 0.88227 0.70966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 8.91 71.98 0.64 -2.60 16 2 C -0.07 -1.64 1.93 -10.71 -0.02 -1.66 16 3 H 0.07 1.82 8.04 -2.39 -0.02 1.80 16 4 C -0.10 -2.71 5.38 30.65 0.16 -2.55 16 5 C 0.06 2.09 5.38 86.33 0.46 2.55 16 6 N -0.55 -18.40 4.79 -908.68 -4.36 -22.76 16 7 C 0.33 12.25 5.92 170.81 1.01 13.26 16 8 N -0.37 -16.97 3.34 -359.72 -1.20 -18.17 16 9 N -0.37 -18.19 9.63 -55.17 -0.53 -18.72 16 10 C 0.35 16.94 7.50 133.52 1.00 17.95 16 11 C -0.45 -20.01 8.98 23.16 0.21 -19.80 16 12 H 0.12 4.53 7.11 -2.91 -0.02 4.51 16 13 C 0.04 1.65 5.50 85.28 0.47 2.11 16 14 N -0.77 -35.94 11.90 21.84 0.26 -35.68 16 15 Si 1.00 31.73 29.56 68.60 2.03 33.76 16 16 H -0.26 -8.12 7.11 99.48 0.71 -7.41 16 17 H -0.27 -8.55 7.11 99.48 0.71 -7.85 16 18 H -0.25 -7.37 7.11 99.48 0.71 -6.66 16 19 N -0.52 -22.98 3.17 -548.30 -1.74 -24.72 16 20 C 0.10 3.26 10.64 127.77 1.36 4.62 16 21 C 0.47 22.04 7.84 179.06 1.40 23.44 16 22 S -0.73 -35.76 29.50 -56.49 -1.67 -37.42 16 23 C 0.08 2.03 4.68 86.33 0.40 2.43 16 24 C -0.07 -1.63 2.30 -11.49 -0.03 -1.66 16 25 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 26 C 0.50 10.92 7.34 71.24 0.52 11.44 16 27 O -0.53 -13.78 14.58 21.98 0.32 -13.46 16 28 O -0.51 -8.63 13.35 -51.46 -0.69 -9.32 16 29 H 0.07 1.56 5.74 -2.39 -0.01 1.55 16 30 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 31 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 33 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.06 2.42 6.54 -2.39 -0.02 2.40 16 35 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.07 2.51 8.12 -2.39 -0.02 2.49 16 37 H 0.11 4.18 7.48 -2.39 -0.02 4.17 16 38 H 0.29 12.28 8.30 -92.71 -0.77 11.51 16 39 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 40 H 0.09 3.05 7.62 -2.39 -0.02 3.03 16 41 H 0.11 3.09 7.32 -2.39 -0.02 3.07 16 42 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.10 2.50 8.01 -2.39 -0.02 2.48 16 44 H 0.43 3.26 9.10 -74.06 -0.67 2.59 16 Total: -1.00 -65.65 371.94 0.40 -65.25 By element: Atomic # 1 Polarization: 31.32 SS G_CDS: 0.36 Total: 31.68 kcal Atomic # 6 Polarization: 41.94 SS G_CDS: 7.60 Total: 49.54 kcal Atomic # 7 Polarization: -112.48 SS G_CDS: -7.56 Total: -120.04 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.37 Total: -22.77 kcal Atomic # 14 Polarization: 31.73 SS G_CDS: 2.03 Total: 33.76 kcal Atomic # 16 Polarization: -35.76 SS G_CDS: -1.67 Total: -37.42 kcal Total: -65.65 0.40 -65.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589355614.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.473 kcal (2) G-P(sol) polarization free energy of solvation -65.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds