Wall clock time and date at job start Sat Apr 11 2020 05:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46973 * 164.33486 * 3 2 1 5 5 C 1.36935 * 120.00231 * 264.35370 * 4 3 2 6 6 H 1.08008 * 119.99968 * 196.59462 * 5 4 3 7 7 C 1.38811 * 120.00075 * 16.60604 * 5 4 3 8 8 N 1.31622 * 119.99995 * 22.37445 * 7 5 4 9 9 Si 1.86802 * 120.00056 * 202.37607 * 7 5 4 10 10 H 1.48502 * 109.47061 * 59.99669 * 9 7 5 11 11 H 1.48494 * 109.47320 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47253 * 300.00131 * 9 7 5 13 13 C 1.46501 * 119.99726 * 84.35538 * 4 3 2 14 14 C 1.50693 * 109.47418 * 269.99775 * 13 4 3 15 15 O 1.21286 * 119.99889 * 0.02562 * 14 13 4 16 16 N 1.34780 * 120.00569 * 179.97438 * 14 13 4 17 17 C 1.46498 * 120.00523 * 180.02562 * 16 14 13 18 18 C 1.50694 * 109.47267 * 180.02562 * 17 16 14 19 19 C 1.38312 * 119.88530 * 89.99561 * 18 17 16 20 20 C 1.38025 * 120.12237 * 180.02562 * 19 18 17 21 21 C 1.39307 * 119.87960 * 359.97438 * 20 19 18 22 22 C 1.48459 * 120.12036 * 179.97438 * 21 20 19 23 23 N 1.34046 * 126.67115 * 0.02562 * 22 21 20 24 24 N 1.28989 * 107.26994 * 179.97438 * 23 22 21 25 25 N 1.28727 * 108.93858 * 0.02562 * 24 23 22 26 26 H 0.97000 * 125.33719 * 180.02562 * 25 24 23 27 27 N 1.28870 * 109.32126 * 359.97438 * 25 24 23 28 28 C 1.39304 * 119.76438 * 0.25403 * 21 20 19 29 29 C 1.38036 * 119.87778 * 359.49069 * 28 21 20 30 30 H 4.40638 * 5.51413 * 180.02562 * 4 1 2 31 31 H 1.09005 * 109.47000 * 44.33977 * 3 2 1 32 32 H 1.08996 * 109.47513 * 284.34009 * 3 2 1 33 33 H 0.96994 * 119.99730 * 179.97438 * 8 7 5 34 34 H 1.09003 * 109.47352 * 149.99939 * 13 4 3 35 35 H 1.09001 * 109.46941 * 30.00385 * 13 4 3 36 36 H 0.97002 * 119.99053 * 359.97438 * 16 14 13 37 37 H 1.09003 * 109.47062 * 59.99566 * 17 16 14 38 38 H 1.09001 * 109.46564 * 300.00231 * 17 16 14 39 39 H 1.08000 * 119.93819 * 0.02562 * 19 18 17 40 40 H 1.07996 * 120.06404 * 180.02562 * 20 19 18 41 41 H 1.07994 * 120.06094 * 179.74990 * 28 21 20 42 42 H 1.07997 * 119.93493 * 180.23263 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3308 -0.3730 5 6 3.4718 1.5965 -1.6730 6 1 4.0726 2.4625 -1.9086 7 6 3.0422 0.7528 -2.6882 8 7 1.9895 -0.0155 -2.5041 9 14 3.9582 0.7078 -4.3156 10 1 5.3660 0.2979 -4.0801 11 1 3.3046 -0.2676 -5.2247 12 1 3.9327 2.0570 -4.9355 13 6 3.2597 2.3767 0.6451 14 6 1.9698 3.1509 0.7323 15 8 1.0368 2.8575 0.0151 16 7 1.8524 4.1686 1.6081 17 6 0.5982 4.9208 1.6933 18 6 0.7279 5.9968 2.7404 19 6 1.1882 7.2518 2.3856 20 6 1.3094 8.2408 3.3408 21 6 0.9666 7.9732 4.6642 22 6 1.0954 9.0328 5.6960 23 7 1.5244 10.2883 5.5050 24 7 1.4861 10.8842 6.6484 25 7 1.0549 10.0576 7.5360 26 1 0.9328 10.2583 8.4772 27 7 0.8099 8.9221 6.9780 28 6 0.5080 6.7060 5.0171 29 6 0.3856 5.7259 4.0529 30 1 -1.0502 -0.0003 0.0003 31 1 3.0097 -0.7342 -0.7183 32 1 3.0095 -0.2537 0.9956 33 1 1.6891 -0.6047 -3.2136 34 1 4.0711 3.0522 0.3736 35 1 3.4753 1.9196 1.6108 36 1 2.5983 4.4025 2.1825 37 1 -0.2130 4.2451 1.9646 38 1 0.3826 5.3781 0.7277 39 1 1.4533 7.4584 1.3592 40 1 1.6686 9.2206 3.0626 41 1 0.2447 6.4921 6.0424 42 1 0.0266 4.7443 4.3248 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001602720385.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:00 Heat of formation + Delta-G solvation = 209.598842 kcal Electronic energy + Delta-G solvation = -27354.336843 eV Core-core repulsion = 23340.691705 eV Total energy + Delta-G solvation = -4013.645138 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.81973 -39.79011 -38.56451 -35.77294 -34.99134 -34.44326 -33.43409 -31.43485 -31.33655 -31.26872 -30.79256 -27.72928 -26.18027 -25.68472 -25.07943 -23.61207 -22.70536 -21.90076 -21.16687 -19.67651 -19.58222 -17.50610 -17.42550 -17.22907 -16.50838 -16.35085 -15.63360 -15.46073 -15.10873 -14.63860 -14.50434 -14.26791 -13.72302 -13.66907 -13.57251 -13.28357 -13.14287 -12.99101 -12.65435 -12.28604 -12.17316 -11.74714 -11.64653 -11.51121 -11.37451 -11.24519 -11.22610 -11.16431 -10.83143 -10.66316 -10.25237 -9.95955 -9.23360 -9.21129 -8.84021 -8.70053 -8.57988 -8.42401 -8.23111 -6.96488 -5.71214 -3.12993 0.34443 0.82080 1.13252 1.85907 1.99403 3.32143 3.39908 3.43887 3.48136 3.48862 3.65730 3.83330 4.00469 4.37779 4.57483 4.58148 4.65462 4.69159 4.72752 4.91719 5.06921 5.16092 5.22978 5.40359 5.52701 5.61052 5.67798 5.75715 5.82706 5.94851 6.01663 6.07045 6.09615 6.13409 6.16333 6.30170 6.40614 6.60736 6.76005 6.99140 7.28553 7.59250 7.77048 7.77889 8.13461 8.33771 9.11595 9.21783 9.47448 9.79794 10.23646 11.31140 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.024545 B = 0.001937 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.488082 B =14449.162931 C =15029.352593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 C -0.095 4.095 3 C 0.269 3.731 4 N -0.558 5.558 5 C -0.266 4.266 6 H 0.075 0.925 7 C 0.007 3.993 8 N -0.876 5.876 9 Si 0.902 3.098 10 H -0.283 1.283 11 H -0.292 1.292 12 H -0.284 1.284 13 C 0.129 3.871 14 C 0.465 3.535 15 O -0.494 6.494 16 N -0.747 5.747 17 C 0.157 3.843 18 C -0.073 4.073 19 C -0.104 4.104 20 C -0.076 4.076 21 C -0.024 4.024 22 C 0.223 3.777 23 N -0.268 5.268 24 N -0.050 5.050 25 N -0.229 5.229 26 H 0.475 0.525 27 N -0.295 5.295 28 C -0.080 4.080 29 C -0.106 4.106 30 H 0.183 0.817 31 H 0.097 0.903 32 H 0.035 0.965 33 H 0.254 0.746 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.391 0.609 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.133 0.867 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.947 16.302 21.092 26.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 C -0.098 4.098 3 C 0.144 3.856 4 N -0.275 5.275 5 C -0.395 4.395 6 H 0.093 0.907 7 C -0.193 4.193 8 N -0.518 5.518 9 Si 0.732 3.268 10 H -0.209 1.209 11 H -0.218 1.218 12 H -0.210 1.210 13 C -0.003 4.003 14 C 0.249 3.751 15 O -0.364 6.364 16 N -0.405 5.405 17 C 0.033 3.967 18 C -0.074 4.074 19 C -0.123 4.123 20 C -0.096 4.096 21 C -0.027 4.027 22 C -0.056 4.056 23 N -0.141 5.141 24 N -0.045 5.045 25 N -0.074 5.074 26 H 0.330 0.670 27 N -0.147 5.147 28 C -0.100 4.100 29 C -0.124 4.124 30 H 0.201 0.799 31 H 0.115 0.885 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.224 0.776 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.152 0.848 40 H 0.154 0.846 41 H 0.150 0.850 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.531 16.496 20.567 26.410 hybrid contribution -0.125 0.153 -0.206 0.286 sum -1.656 16.649 20.361 26.353 Atomic orbital electron populations 1.23948 0.95115 1.04026 1.07693 1.23923 0.94994 0.96778 0.94072 1.17881 0.83257 0.87937 0.96484 1.44235 1.72732 1.05265 1.05239 1.19123 1.26395 1.11521 0.82505 0.90705 1.24960 0.96123 1.00563 0.97647 1.70184 1.20972 1.27738 1.32889 0.86380 0.79532 0.77394 0.83506 1.20940 1.21760 1.21050 1.21084 0.93075 0.91754 0.94409 1.23505 0.93171 0.79514 0.78957 1.90769 1.40118 1.65158 1.40346 1.46627 1.15005 1.35772 1.43064 1.20100 0.88985 0.91231 0.96403 1.20269 0.97356 0.95031 0.94744 1.21103 0.98965 0.92236 0.99995 1.21170 0.97393 1.00052 0.90975 1.17246 1.05041 0.90304 0.90144 1.23758 0.99250 0.92955 0.89654 1.76101 1.18218 1.05003 1.14822 1.78923 1.13127 1.19191 0.93279 1.47735 1.40974 1.04801 1.13931 0.67041 1.74935 1.22463 1.07925 1.09330 1.21137 0.97400 0.91331 1.00152 1.21073 0.99839 0.99497 0.92024 0.79925 0.88476 0.94717 0.93559 0.90465 0.91333 0.77585 0.91174 0.91122 0.84780 0.84586 0.84953 0.84916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -7.20 18.78 29.55 0.56 -6.64 16 2 C -0.09 -2.44 10.03 -37.12 -0.37 -2.81 16 3 C 0.27 6.46 5.45 -6.83 -0.04 6.42 16 4 N -0.56 -13.54 2.09 -177.95 -0.37 -13.91 16 5 C -0.27 -7.17 9.66 -15.06 -0.15 -7.31 16 6 H 0.08 1.96 7.90 -52.48 -0.41 1.54 16 7 C 0.01 0.21 4.85 -17.43 -0.08 0.12 16 8 N -0.88 -25.59 9.50 55.49 0.53 -25.06 16 9 Si 0.90 21.69 29.61 -169.99 -5.03 16.66 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 C 0.13 2.46 6.18 -5.20 -0.03 2.43 16 14 C 0.46 9.19 7.81 -10.99 -0.09 9.11 16 15 O -0.49 -12.53 14.43 5.55 0.08 -12.45 16 16 N -0.75 -10.75 5.55 -61.48 -0.34 -11.09 16 17 C 0.16 2.07 5.79 -5.20 -0.03 2.04 16 18 C -0.07 -0.75 5.25 -104.57 -0.55 -1.30 16 19 C -0.10 -1.00 9.68 -39.63 -0.38 -1.38 16 20 C -0.08 -0.71 9.70 -39.26 -0.38 -1.09 16 21 C -0.02 -0.23 5.88 -104.89 -0.62 -0.85 16 22 C 0.22 2.24 7.94 -156.31 -1.24 1.00 16 23 N -0.27 -2.87 12.23 32.15 0.39 -2.47 16 24 N -0.05 -0.44 13.47 60.35 0.81 0.37 16 25 N -0.23 -1.37 7.90 60.35 0.48 -0.89 16 26 H 0.48 0.50 8.96 -340.38 -3.05 -2.55 16 27 N -0.29 -2.50 12.08 32.17 0.39 -2.11 16 28 C -0.08 -0.71 9.70 -39.26 -0.38 -1.09 16 29 C -0.11 -0.98 9.68 -39.63 -0.38 -1.37 16 30 H 0.18 4.00 7.80 -54.08 -0.42 3.58 16 31 H 0.10 2.51 6.41 -51.93 -0.33 2.18 16 32 H 0.03 0.71 7.97 -51.93 -0.41 0.29 16 33 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.08 1.34 8.02 -51.93 -0.42 0.92 16 35 H 0.07 1.10 7.95 -51.93 -0.41 0.68 16 36 H 0.39 4.47 8.46 -40.82 -0.35 4.13 16 37 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 38 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 39 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.14 1.16 7.89 -52.49 -0.41 0.75 16 41 H 0.13 1.01 7.88 -52.49 -0.41 0.60 16 42 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 LS Contribution 374.43 15.07 5.64 5.64 Total: -1.00 -36.66 374.43 -9.05 -45.71 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -7.46 Total: 2.31 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -4.17 Total: -2.71 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: 1.89 Total: -55.16 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.08 Total: -12.45 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.66 -9.05 -45.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602720385.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 255.312 kcal (2) G-P(sol) polarization free energy of solvation -36.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 218.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 209.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds