Wall clock time and date at job start Sat Apr 11 2020 05:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46973 * 164.33486 * 3 2 1 5 5 C 1.36935 * 120.00231 * 264.35370 * 4 3 2 6 6 H 1.08008 * 119.99968 * 196.59462 * 5 4 3 7 7 C 1.38811 * 120.00075 * 16.60604 * 5 4 3 8 8 N 1.31622 * 119.99995 * 22.37445 * 7 5 4 9 9 Si 1.86802 * 120.00056 * 202.37607 * 7 5 4 10 10 H 1.48502 * 109.47061 * 59.99669 * 9 7 5 11 11 H 1.48494 * 109.47320 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47253 * 300.00131 * 9 7 5 13 13 C 1.46501 * 119.99726 * 84.35538 * 4 3 2 14 14 C 1.50693 * 109.47418 * 269.99775 * 13 4 3 15 15 O 1.21286 * 119.99889 * 0.02562 * 14 13 4 16 16 N 1.34780 * 120.00569 * 179.97438 * 14 13 4 17 17 C 1.46498 * 120.00523 * 180.02562 * 16 14 13 18 18 C 1.50694 * 109.47267 * 180.02562 * 17 16 14 19 19 C 1.38312 * 119.88530 * 89.99561 * 18 17 16 20 20 C 1.38025 * 120.12237 * 180.02562 * 19 18 17 21 21 C 1.39307 * 119.87960 * 359.97438 * 20 19 18 22 22 C 1.48459 * 120.12036 * 179.97438 * 21 20 19 23 23 N 1.34046 * 126.67115 * 0.02562 * 22 21 20 24 24 N 1.28989 * 107.26994 * 179.97438 * 23 22 21 25 25 N 1.28727 * 108.93858 * 0.02562 * 24 23 22 26 26 H 0.97000 * 125.33719 * 180.02562 * 25 24 23 27 27 N 1.28870 * 109.32126 * 359.97438 * 25 24 23 28 28 C 1.39304 * 119.76438 * 0.25403 * 21 20 19 29 29 C 1.38036 * 119.87778 * 359.49069 * 28 21 20 30 30 H 4.40638 * 5.51413 * 180.02562 * 4 1 2 31 31 H 1.09005 * 109.47000 * 44.33977 * 3 2 1 32 32 H 1.08996 * 109.47513 * 284.34009 * 3 2 1 33 33 H 0.96994 * 119.99730 * 179.97438 * 8 7 5 34 34 H 1.09003 * 109.47352 * 149.99939 * 13 4 3 35 35 H 1.09001 * 109.46941 * 30.00385 * 13 4 3 36 36 H 0.97002 * 119.99053 * 359.97438 * 16 14 13 37 37 H 1.09003 * 109.47062 * 59.99566 * 17 16 14 38 38 H 1.09001 * 109.46564 * 300.00231 * 17 16 14 39 39 H 1.08000 * 119.93819 * 0.02562 * 19 18 17 40 40 H 1.07996 * 120.06404 * 180.02562 * 20 19 18 41 41 H 1.07994 * 120.06094 * 179.74990 * 28 21 20 42 42 H 1.07997 * 119.93493 * 180.23263 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3308 -0.3730 5 6 3.4718 1.5965 -1.6730 6 1 4.0726 2.4625 -1.9086 7 6 3.0422 0.7528 -2.6882 8 7 1.9895 -0.0155 -2.5041 9 14 3.9582 0.7078 -4.3156 10 1 5.3660 0.2979 -4.0801 11 1 3.3046 -0.2676 -5.2247 12 1 3.9327 2.0570 -4.9355 13 6 3.2597 2.3767 0.6451 14 6 1.9698 3.1509 0.7323 15 8 1.0368 2.8575 0.0151 16 7 1.8524 4.1686 1.6081 17 6 0.5982 4.9208 1.6933 18 6 0.7279 5.9968 2.7404 19 6 1.1882 7.2518 2.3856 20 6 1.3094 8.2408 3.3408 21 6 0.9666 7.9732 4.6642 22 6 1.0954 9.0328 5.6960 23 7 1.5244 10.2883 5.5050 24 7 1.4861 10.8842 6.6484 25 7 1.0549 10.0576 7.5360 26 1 0.9328 10.2583 8.4772 27 7 0.8099 8.9221 6.9780 28 6 0.5080 6.7060 5.0171 29 6 0.3856 5.7259 4.0529 30 1 -1.0502 -0.0003 0.0003 31 1 3.0097 -0.7342 -0.7183 32 1 3.0095 -0.2537 0.9956 33 1 1.6891 -0.6047 -3.2136 34 1 4.0711 3.0522 0.3736 35 1 3.4753 1.9196 1.6108 36 1 2.5983 4.4025 2.1825 37 1 -0.2130 4.2451 1.9646 38 1 0.3826 5.3781 0.7277 39 1 1.4533 7.4584 1.3592 40 1 1.6686 9.2206 3.0626 41 1 0.2447 6.4921 6.0424 42 1 0.0266 4.7443 4.3248 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001602720385.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:59 Heat of formation + Delta-G solvation = 184.376893 kcal Electronic energy + Delta-G solvation = -27355.430549 eV Core-core repulsion = 23340.691705 eV Total energy + Delta-G solvation = -4014.738844 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.47378 -40.74486 -39.93562 -37.48164 -36.04756 -35.26512 -34.37137 -33.39013 -33.03233 -32.02374 -31.89800 -29.17438 -27.87274 -27.11436 -25.75607 -24.56064 -23.55854 -23.41678 -22.02111 -21.16187 -20.20378 -19.32504 -18.24658 -18.19594 -18.15223 -17.58470 -17.04633 -16.58072 -16.44098 -15.88091 -15.86977 -15.36081 -15.14665 -14.89768 -14.80791 -14.40599 -14.38044 -14.02513 -13.79454 -13.62121 -13.34253 -13.23228 -13.09598 -12.62511 -12.43790 -12.40915 -12.38052 -12.27370 -12.22016 -11.94959 -11.92320 -11.89636 -10.89540 -10.61675 -10.49589 -10.16997 -9.95777 -9.81270 -9.63698 -8.87389 -7.75790 -5.17908 -0.38216 0.15177 0.41304 1.24069 1.41823 1.51393 1.52978 1.59731 2.11909 2.41028 2.52311 2.63294 2.64770 2.73576 2.93602 3.15046 3.38035 3.67276 3.88852 3.89878 4.02725 4.19014 4.21388 4.34217 4.37574 4.43912 4.45994 4.68542 4.74272 4.78515 4.82862 4.89334 5.00093 5.09711 5.32043 5.36552 5.40915 5.58911 5.61728 5.68240 5.71281 5.76301 5.86871 6.30817 6.88348 7.10321 7.14558 7.55150 7.70421 7.90360 8.27298 9.24979 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.024545 B = 0.001937 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.488082 B =14449.162931 C =15029.352593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 C -0.112 4.112 3 C 0.268 3.732 4 N -0.573 5.573 5 C -0.265 4.265 6 H 0.079 0.921 7 C -0.050 4.050 8 N -0.909 5.909 9 Si 0.963 3.037 10 H -0.270 1.270 11 H -0.303 1.303 12 H -0.285 1.285 13 C 0.122 3.878 14 C 0.467 3.533 15 O -0.557 6.557 16 N -0.724 5.724 17 C 0.163 3.837 18 C -0.078 4.078 19 C -0.103 4.103 20 C -0.077 4.077 21 C -0.026 4.026 22 C 0.210 3.790 23 N -0.294 5.294 24 N -0.057 5.057 25 N -0.200 5.200 26 H 0.495 0.505 27 N -0.294 5.294 28 C -0.076 4.076 29 C -0.101 4.101 30 H 0.203 0.797 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.243 0.757 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.410 0.590 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.139 0.861 40 H 0.142 0.858 41 H 0.147 0.853 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.042 17.793 23.410 29.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.324 4.324 2 C -0.115 4.115 3 C 0.143 3.857 4 N -0.291 5.291 5 C -0.395 4.395 6 H 0.096 0.904 7 C -0.246 4.246 8 N -0.553 5.553 9 Si 0.792 3.208 10 H -0.196 1.196 11 H -0.230 1.230 12 H -0.211 1.211 13 C -0.008 4.008 14 C 0.252 3.748 15 O -0.432 6.432 16 N -0.380 5.380 17 C 0.039 3.961 18 C -0.079 4.079 19 C -0.121 4.121 20 C -0.098 4.098 21 C -0.030 4.030 22 C -0.070 4.070 23 N -0.166 5.166 24 N -0.052 5.052 25 N -0.051 5.051 26 H 0.354 0.646 27 N -0.146 5.146 28 C -0.096 4.096 29 C -0.120 4.120 30 H 0.220 0.780 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.052 0.948 34 H 0.117 0.883 35 H 0.125 0.875 36 H 0.246 0.754 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.157 0.843 40 H 0.160 0.840 41 H 0.165 0.835 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.489 18.068 22.977 29.234 hybrid contribution -0.436 -0.128 -0.683 0.820 sum -0.925 17.940 22.294 28.630 Atomic orbital electron populations 1.24604 0.96133 1.03975 1.07737 1.24514 0.95961 0.96894 0.94115 1.17933 0.82493 0.87674 0.97638 1.44315 1.72870 1.06684 1.05237 1.19443 1.25373 1.10832 0.83864 0.90367 1.25657 0.97064 1.01152 1.00751 1.70367 1.22699 1.29023 1.33236 0.85416 0.78769 0.76716 0.79869 1.19616 1.22954 1.21128 1.21341 0.93113 0.91413 0.94920 1.23325 0.92480 0.80191 0.78819 1.90760 1.42033 1.67277 1.43145 1.46213 1.16146 1.34096 1.41576 1.20006 0.87792 0.91515 0.96749 1.19973 0.99142 0.94422 0.94389 1.21143 0.98628 0.91956 1.00384 1.21228 0.97393 1.00228 0.90907 1.17403 1.04679 0.90618 0.90277 1.23838 0.99967 0.92988 0.90201 1.76082 1.19257 1.05486 1.15785 1.78870 1.13598 1.19425 0.93348 1.47804 1.38894 1.03752 1.14659 0.64634 1.74898 1.22259 1.08604 1.08851 1.21251 0.96861 0.90783 1.00735 1.21160 0.99212 1.00100 0.91495 0.78018 0.91043 0.90880 0.94787 0.88302 0.87550 0.75377 0.92211 0.92592 0.84267 0.84011 0.83505 0.83907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -15.43 18.78 74.32 1.40 -14.03 16 2 C -0.11 -5.80 10.03 31.13 0.31 -5.49 16 3 C 0.27 12.77 5.45 84.57 0.46 13.23 16 4 N -0.57 -27.34 2.09 -716.91 -1.50 -28.84 16 5 C -0.27 -14.19 9.66 84.03 0.81 -13.38 16 6 H 0.08 4.03 7.90 -2.91 -0.02 4.01 16 7 C -0.05 -2.79 4.85 84.86 0.41 -2.37 16 8 N -0.91 -54.47 9.50 21.65 0.21 -54.26 16 9 Si 0.96 45.33 29.61 68.60 2.03 47.36 16 10 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.30 -14.64 7.11 99.48 0.71 -13.94 16 12 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 13 C 0.12 4.41 6.18 85.63 0.53 4.93 16 14 C 0.47 17.92 7.81 87.65 0.68 18.61 16 15 O -0.56 -28.44 14.43 -3.05 -0.04 -28.49 16 16 N -0.72 -19.54 5.55 -466.79 -2.59 -22.13 16 17 C 0.16 4.18 5.79 85.63 0.50 4.67 16 18 C -0.08 -1.48 5.25 -19.83 -0.10 -1.58 16 19 C -0.10 -1.81 9.68 22.24 0.22 -1.59 16 20 C -0.08 -1.33 9.70 22.48 0.22 -1.11 16 21 C -0.03 -0.46 5.88 -20.04 -0.12 -0.58 16 22 C 0.21 3.83 7.94 137.38 1.09 4.92 16 23 N -0.29 -5.86 12.23 -52.19 -0.64 -6.49 16 24 N -0.06 -0.91 13.47 37.02 0.50 -0.41 16 25 N -0.20 -1.94 7.90 37.02 0.29 -1.65 16 26 H 0.49 -0.23 8.96 -347.54 -3.12 -3.35 16 27 N -0.29 -4.29 12.08 -52.14 -0.63 -4.92 16 28 C -0.08 -1.18 9.70 22.48 0.22 -0.96 16 29 C -0.10 -1.66 9.68 22.24 0.22 -1.44 16 30 H 0.20 8.91 7.80 -4.41 -0.03 8.88 16 31 H 0.07 3.76 6.41 -2.38 -0.02 3.75 16 32 H 0.07 2.84 7.97 -2.39 -0.02 2.82 16 33 H 0.24 14.46 8.31 -92.71 -0.77 13.69 16 34 H 0.10 3.12 8.02 -2.39 -0.02 3.10 16 35 H 0.11 3.01 7.95 -2.39 -0.02 2.99 16 36 H 0.41 8.19 8.46 -92.71 -0.78 7.40 16 37 H 0.06 1.68 8.08 -2.39 -0.02 1.66 16 38 H 0.06 1.62 8.08 -2.39 -0.02 1.60 16 39 H 0.14 2.27 8.06 -2.91 -0.02 2.24 16 40 H 0.14 2.24 7.89 -2.91 -0.02 2.22 16 41 H 0.15 1.83 7.88 -2.91 -0.02 1.81 16 42 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -80.60 374.43 1.65 -78.95 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -2.81 Total: 17.06 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: 6.84 Total: 3.83 kcal Atomic # 7 Polarization: -114.35 SS G_CDS: -4.36 Total: -118.71 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -0.04 Total: -28.49 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -80.60 1.65 -78.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602720385.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 263.328 kcal (2) G-P(sol) polarization free energy of solvation -80.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 182.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 184.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds