Wall clock time and date at job start Sat Apr 11 2020 05:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 110.75047 * 2 1 4 4 C 1.55566 * 111.01010 * 236.42511 * 2 1 3 5 5 C 1.54942 * 100.82715 * 207.60297 * 4 2 1 6 6 H 1.08998 * 110.31415 * 277.48449 * 5 4 2 7 7 C 1.50703 * 110.30794 * 155.40583 * 5 4 2 8 8 O 1.21283 * 120.00239 * 246.39143 * 7 5 4 9 9 N 1.34776 * 120.00095 * 66.39790 * 7 5 4 10 10 C 1.46973 * 120.59013 * 359.71630 * 9 7 5 11 11 C 1.53809 * 108.39582 * 124.76116 * 10 9 7 12 12 N 1.46963 * 108.58077 * 49.63552 * 11 10 9 13 13 C 1.34779 * 120.59311 * 124.62322 * 12 11 10 14 14 O 1.21682 * 120.00002 * 174.77930 * 13 12 11 15 15 C 1.46379 * 119.99763 * 354.77813 * 13 12 11 16 16 H 1.07995 * 120.00093 * 5.34110 * 15 13 12 17 17 C 1.40051 * 119.99423 * 185.34512 * 15 13 12 18 18 N 1.30672 * 120.00535 * 5.19430 * 17 15 13 19 19 Si 1.86808 * 119.99580 * 185.19265 * 17 15 13 20 20 H 1.48506 * 109.46801 * 85.00057 * 19 17 15 21 21 H 1.48498 * 109.46930 * 204.99674 * 19 17 15 22 22 H 1.48496 * 109.47183 * 325.00118 * 19 17 15 23 23 C 1.46962 * 118.81188 * 304.64735 * 12 11 10 24 24 C 1.46963 * 120.59565 * 179.97438 * 9 7 5 25 25 O 1.43645 * 105.22073 * 36.44600 * 5 4 2 26 26 C 1.43236 * 109.97136 * 335.51984 * 25 5 4 27 27 H 1.09000 * 109.83264 * 121.31896 * 26 25 5 28 28 C 1.50700 * 109.83426 * 242.19882 * 26 25 5 29 29 O 1.20828 * 119.99764 * 3.54700 * 28 26 25 30 30 O 1.34229 * 120.00596 * 183.54814 * 28 26 25 31 31 H 1.09003 * 109.46995 * 297.97703 * 1 2 3 32 32 H 1.08993 * 109.47083 * 57.97970 * 1 2 3 33 33 H 1.09000 * 109.46780 * 177.98130 * 1 2 3 34 34 H 1.09004 * 111.22514 * 89.70783 * 4 2 1 35 35 H 1.08999 * 111.13757 * 325.46571 * 4 2 1 36 36 H 1.08998 * 109.60648 * 244.54255 * 10 9 7 37 37 H 1.09002 * 109.60612 * 5.05106 * 10 9 7 38 38 H 1.09001 * 109.74154 * 289.84041 * 11 10 9 39 39 H 1.08999 * 109.67204 * 169.38615 * 11 10 9 40 40 H 0.96998 * 120.00097 * 180.02562 * 18 17 15 41 41 H 1.08997 * 109.60718 * 295.48133 * 23 12 11 42 42 H 1.09004 * 109.75129 * 175.05619 * 23 12 11 43 43 H 1.08996 * 109.61056 * 354.94712 * 24 9 7 44 44 H 1.08996 * 109.60986 * 115.28715 * 24 9 7 45 45 H 0.96694 * 117.00000 * 180.02562 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9162 1.0192 0.0000 4 6 2.0878 -0.8031 -1.2100 5 6 3.4511 -1.2735 -0.6435 6 1 4.1962 -0.4847 -0.7468 7 6 3.9097 -2.5215 -1.3529 8 8 3.9843 -3.5702 -0.7483 9 7 4.2372 -2.4722 -2.6594 10 6 4.1460 -1.2097 -3.4063 11 6 5.5152 -0.9242 -4.0461 12 7 5.9641 -2.1332 -4.7508 13 6 6.2907 -2.0841 -6.0575 14 8 6.7509 -3.0674 -6.6069 15 6 6.0917 -0.8478 -6.8156 16 1 5.7651 0.0489 -6.3102 17 6 6.3248 -0.8281 -8.1964 18 7 6.6211 -1.9347 -8.8250 19 14 6.2121 0.7804 -9.1397 20 1 7.5103 1.4964 -9.0541 21 1 5.8953 0.4984 -10.5629 22 1 5.1413 1.6249 -8.5521 23 6 6.0500 -3.3968 -4.0053 24 6 4.6866 -3.6811 -3.3640 25 8 3.2074 -1.5502 0.7448 26 6 2.0795 -0.7958 1.2034 27 1 1.3127 -1.4709 1.5832 28 6 2.5082 0.1544 2.2917 29 8 3.6738 0.2334 2.6001 30 8 1.5953 0.9129 2.9186 31 1 -0.3633 0.4821 0.9076 32 1 -0.3633 0.5449 -0.8713 33 1 -0.3633 -1.0270 -0.0362 34 1 2.2244 -0.1613 -2.0804 35 1 1.4469 -1.6523 -1.4471 36 1 3.3873 -1.2988 -4.1838 37 1 3.8825 -0.4002 -2.7255 38 1 6.2363 -0.6632 -3.2715 39 1 5.4248 -0.1004 -4.7541 40 1 6.7830 -1.9210 -9.7813 41 1 6.8091 -3.3119 -3.2278 42 1 6.3112 -4.2082 -4.6846 43 1 4.7803 -4.5040 -2.6554 44 1 3.9641 -3.9441 -4.1365 45 1 1.9182 1.5074 3.6095 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607441007.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:04 Heat of formation + Delta-G solvation = -185.975476 kcal Electronic energy + Delta-G solvation = -30666.827863 eV Core-core repulsion = 26264.134913 eV Total energy + Delta-G solvation = -4402.692950 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.33692 -40.19484 -38.95314 -37.79571 -36.44494 -35.92236 -34.12597 -33.21967 -32.54837 -31.78353 -30.33818 -27.74180 -27.48398 -26.24188 -24.71890 -23.30172 -22.33774 -21.73865 -21.23788 -19.89950 -18.80900 -18.52984 -17.80532 -17.32000 -16.56936 -16.39033 -16.01352 -15.97029 -15.50636 -15.34581 -14.95338 -14.57357 -14.32041 -14.14209 -14.08016 -14.01893 -13.54198 -13.52499 -12.97242 -12.85144 -12.71148 -12.41865 -12.05837 -11.94405 -11.86277 -11.68463 -11.64205 -11.47698 -11.34648 -11.22866 -11.04677 -11.03496 -10.96898 -10.77248 -10.32493 -10.21998 -10.14519 -9.50593 -8.96169 -8.73259 -7.70595 -7.32254 -6.31887 -4.76287 1.79350 2.24119 2.56927 2.87040 3.06914 3.13677 3.15737 3.50414 3.74770 3.98709 4.16600 4.29701 4.39387 4.43439 4.45259 4.60214 4.77391 4.80143 4.89205 5.08530 5.13507 5.20161 5.26471 5.36981 5.39930 5.48769 5.51131 5.56544 5.60503 5.74266 5.83242 5.89960 5.97964 6.09295 6.21004 6.28536 6.31673 6.47734 6.67152 7.33909 7.42465 7.44907 7.52505 7.98488 8.17876 8.21180 8.90918 9.28898 10.45541 10.63741 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017046 B = 0.002716 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.218172 B =10308.092362 C =11185.055822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.109 4.109 3 H 0.095 0.905 4 C -0.144 4.144 5 C 0.061 3.939 6 H 0.103 0.897 7 C 0.516 3.484 8 O -0.527 6.527 9 N -0.600 5.600 10 C 0.084 3.916 11 C 0.107 3.893 12 N -0.642 5.642 13 C 0.560 3.440 14 O -0.576 6.576 15 C -0.546 4.546 16 H 0.073 0.927 17 C 0.089 3.911 18 N -0.766 5.766 19 Si 0.907 3.093 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.265 1.265 23 C 0.108 3.892 24 C 0.101 3.899 25 O -0.318 6.318 26 C 0.093 3.907 27 H 0.125 0.875 28 C 0.464 3.536 29 O -0.494 6.494 30 O -0.514 6.514 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.048 0.952 39 H 0.108 0.892 40 H 0.270 0.730 41 H 0.047 0.953 42 H 0.097 0.903 43 H 0.093 0.907 44 H 0.071 0.929 45 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.507 8.500 16.869 23.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.128 4.128 3 H 0.113 0.887 4 C -0.182 4.182 5 C 0.001 3.999 6 H 0.120 0.880 7 C 0.303 3.697 8 O -0.403 6.403 9 N -0.335 5.335 10 C -0.040 4.040 11 C -0.019 4.019 12 N -0.381 5.381 13 C 0.366 3.634 14 O -0.458 6.458 15 C -0.582 4.582 16 H 0.091 0.909 17 C -0.132 4.132 18 N -0.394 5.394 19 Si 0.732 3.268 20 H -0.196 1.196 21 H -0.205 1.205 22 H -0.189 1.189 23 C -0.017 4.017 24 C -0.022 4.022 25 O -0.235 6.235 26 C 0.033 3.967 27 H 0.142 0.858 28 C 0.304 3.696 29 O -0.380 6.380 30 O -0.327 6.327 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.124 0.876 35 H 0.112 0.888 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.066 0.934 39 H 0.126 0.874 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.115 0.885 43 H 0.111 0.889 44 H 0.090 0.910 45 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -13.828 6.880 16.593 22.669 hybrid contribution 0.178 1.496 0.031 1.507 sum -13.650 8.376 16.624 23.083 Atomic orbital electron populations 1.21759 0.91967 1.03051 1.03274 1.22703 0.98401 0.99842 0.91871 0.88672 1.23585 0.94672 1.01299 0.98627 1.22942 0.98615 0.96197 0.82187 0.87988 1.20127 0.78056 0.89712 0.81852 1.90706 1.52918 1.31381 1.65318 1.48002 1.65543 1.11271 1.08652 1.22581 1.00365 0.84937 0.96080 1.21898 0.92441 0.90865 0.96650 1.48183 1.72432 1.06533 1.10970 1.18287 0.77367 0.89672 0.78066 1.90601 1.48932 1.38448 1.67804 1.20916 1.49084 0.95688 0.92556 0.90861 1.25722 0.92659 0.96916 0.97865 1.69984 1.32997 1.27093 1.09373 0.86400 0.79309 0.82338 0.78799 1.19586 1.20490 1.18911 1.21499 0.94147 0.90559 0.95521 1.22108 0.97157 0.86817 0.96084 1.88677 1.47949 1.63486 1.23434 1.22363 0.89671 0.92280 0.92362 0.85762 1.23869 0.83982 0.79530 0.82180 1.90769 1.19736 1.64558 1.62937 1.84493 1.43331 1.53081 1.51809 0.91156 0.91206 0.91712 0.87618 0.88762 0.90185 0.89854 0.93395 0.87446 0.91897 0.93476 0.88485 0.88862 0.91029 0.72910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.69 9.16 37.16 0.34 -0.35 16 2 C -0.11 -0.72 3.11 -88.53 -0.27 -1.00 16 3 H 0.09 0.57 7.84 -51.93 -0.41 0.16 16 4 C -0.14 -1.13 5.27 -24.34 -0.13 -1.26 16 5 C 0.06 0.72 2.90 -26.86 -0.08 0.64 16 6 H 0.10 1.09 7.54 -51.93 -0.39 0.70 16 7 C 0.52 7.81 7.11 -10.98 -0.08 7.74 16 8 O -0.53 -10.02 15.95 -13.79 -0.22 -10.24 16 9 N -0.60 -8.80 2.94 -172.24 -0.51 -9.31 16 10 C 0.08 1.07 5.84 -3.36 -0.02 1.05 16 11 C 0.11 1.75 6.52 -3.37 -0.02 1.72 16 12 N -0.64 -13.65 2.95 -173.91 -0.51 -14.16 16 13 C 0.56 15.04 7.60 -12.98 -0.10 14.94 16 14 O -0.58 -17.91 14.51 5.20 0.08 -17.84 16 15 C -0.55 -14.24 8.88 -35.63 -0.32 -14.56 16 16 H 0.07 1.69 5.63 -52.49 -0.30 1.39 16 17 C 0.09 2.34 5.49 -17.37 -0.10 2.24 16 18 N -0.77 -22.01 11.88 55.55 0.66 -21.35 16 19 Si 0.91 18.90 29.56 -169.99 -5.03 13.87 16 20 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 21 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 22 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 23 C 0.11 2.06 6.57 -3.62 -0.02 2.03 16 24 C 0.10 1.65 6.59 -3.62 -0.02 1.63 16 25 O -0.32 -4.33 9.81 -64.45 -0.63 -4.96 16 26 C 0.09 0.87 3.66 -27.16 -0.10 0.77 16 27 H 0.13 0.95 7.82 -51.93 -0.41 0.54 16 28 C 0.46 4.57 7.51 36.01 0.27 4.84 16 29 O -0.49 -6.93 17.28 -25.41 -0.44 -7.37 16 30 O -0.51 -3.16 13.42 -39.26 -0.53 -3.69 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.31 8.13 -51.93 -0.42 -0.11 16 34 H 0.11 0.63 6.41 -51.93 -0.33 0.30 16 35 H 0.09 0.76 7.95 -51.93 -0.41 0.35 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.08 0.76 4.40 -51.93 -0.23 0.53 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.11 1.77 5.29 -51.93 -0.27 1.50 16 40 H 0.27 7.06 8.29 -40.82 -0.34 6.72 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.10 2.05 7.03 -51.93 -0.36 1.68 16 43 H 0.09 1.51 6.99 -51.93 -0.36 1.15 16 44 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.41 0.94 9.10 45.56 0.41 1.35 16 LS Contribution 367.12 15.07 5.53 5.53 Total: -1.00 -38.91 367.12 -7.40 -46.31 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -5.16 Total: 2.76 kcal Atomic # 6 Polarization: 21.09 SS G_CDS: -0.65 Total: 20.44 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: -0.36 Total: -44.82 kcal Atomic # 8 Polarization: -42.35 SS G_CDS: -1.74 Total: -44.09 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -38.91 -7.40 -46.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607441007.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.664 kcal (2) G-P(sol) polarization free energy of solvation -38.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds