Wall clock time and date at job start Sat Apr 11 2020 05:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 110.75047 * 2 1 4 4 C 1.55566 * 111.01010 * 236.42511 * 2 1 3 5 5 C 1.54942 * 100.82715 * 207.60297 * 4 2 1 6 6 H 1.08998 * 110.31415 * 277.48449 * 5 4 2 7 7 C 1.50703 * 110.30794 * 155.40583 * 5 4 2 8 8 O 1.21283 * 120.00239 * 246.39143 * 7 5 4 9 9 N 1.34776 * 120.00095 * 66.39790 * 7 5 4 10 10 C 1.46973 * 120.59013 * 359.71630 * 9 7 5 11 11 C 1.53809 * 108.39582 * 124.76116 * 10 9 7 12 12 N 1.46963 * 108.58077 * 49.63552 * 11 10 9 13 13 C 1.34779 * 120.59311 * 124.62322 * 12 11 10 14 14 O 1.21682 * 120.00002 * 174.77930 * 13 12 11 15 15 C 1.46379 * 119.99763 * 354.77813 * 13 12 11 16 16 H 1.07995 * 120.00093 * 5.34110 * 15 13 12 17 17 C 1.40051 * 119.99423 * 185.34512 * 15 13 12 18 18 N 1.30672 * 120.00535 * 5.19430 * 17 15 13 19 19 Si 1.86808 * 119.99580 * 185.19265 * 17 15 13 20 20 H 1.48506 * 109.46801 * 85.00057 * 19 17 15 21 21 H 1.48498 * 109.46930 * 204.99674 * 19 17 15 22 22 H 1.48496 * 109.47183 * 325.00118 * 19 17 15 23 23 C 1.46962 * 118.81188 * 304.64735 * 12 11 10 24 24 C 1.46963 * 120.59565 * 179.97438 * 9 7 5 25 25 O 1.43645 * 105.22073 * 36.44600 * 5 4 2 26 26 C 1.43236 * 109.97136 * 335.51984 * 25 5 4 27 27 H 1.09000 * 109.83264 * 121.31896 * 26 25 5 28 28 C 1.50700 * 109.83426 * 242.19882 * 26 25 5 29 29 O 1.20828 * 119.99764 * 3.54700 * 28 26 25 30 30 O 1.34229 * 120.00596 * 183.54814 * 28 26 25 31 31 H 1.09003 * 109.46995 * 297.97703 * 1 2 3 32 32 H 1.08993 * 109.47083 * 57.97970 * 1 2 3 33 33 H 1.09000 * 109.46780 * 177.98130 * 1 2 3 34 34 H 1.09004 * 111.22514 * 89.70783 * 4 2 1 35 35 H 1.08999 * 111.13757 * 325.46571 * 4 2 1 36 36 H 1.08998 * 109.60648 * 244.54255 * 10 9 7 37 37 H 1.09002 * 109.60612 * 5.05106 * 10 9 7 38 38 H 1.09001 * 109.74154 * 289.84041 * 11 10 9 39 39 H 1.08999 * 109.67204 * 169.38615 * 11 10 9 40 40 H 0.96998 * 120.00097 * 180.02562 * 18 17 15 41 41 H 1.08997 * 109.60718 * 295.48133 * 23 12 11 42 42 H 1.09004 * 109.75129 * 175.05619 * 23 12 11 43 43 H 1.08996 * 109.61056 * 354.94712 * 24 9 7 44 44 H 1.08996 * 109.60986 * 115.28715 * 24 9 7 45 45 H 0.96694 * 117.00000 * 180.02562 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9162 1.0192 0.0000 4 6 2.0878 -0.8031 -1.2100 5 6 3.4511 -1.2735 -0.6435 6 1 4.1962 -0.4847 -0.7468 7 6 3.9097 -2.5215 -1.3529 8 8 3.9843 -3.5702 -0.7483 9 7 4.2372 -2.4722 -2.6594 10 6 4.1460 -1.2097 -3.4063 11 6 5.5152 -0.9242 -4.0461 12 7 5.9641 -2.1332 -4.7508 13 6 6.2907 -2.0841 -6.0575 14 8 6.7509 -3.0674 -6.6069 15 6 6.0917 -0.8478 -6.8156 16 1 5.7651 0.0489 -6.3102 17 6 6.3248 -0.8281 -8.1964 18 7 6.6211 -1.9347 -8.8250 19 14 6.2121 0.7804 -9.1397 20 1 7.5103 1.4964 -9.0541 21 1 5.8953 0.4984 -10.5629 22 1 5.1413 1.6249 -8.5521 23 6 6.0500 -3.3968 -4.0053 24 6 4.6866 -3.6811 -3.3640 25 8 3.2074 -1.5502 0.7448 26 6 2.0795 -0.7958 1.2034 27 1 1.3127 -1.4709 1.5832 28 6 2.5082 0.1544 2.2917 29 8 3.6738 0.2334 2.6001 30 8 1.5953 0.9129 2.9186 31 1 -0.3633 0.4821 0.9076 32 1 -0.3633 0.5449 -0.8713 33 1 -0.3633 -1.0270 -0.0362 34 1 2.2244 -0.1613 -2.0804 35 1 1.4469 -1.6523 -1.4471 36 1 3.3873 -1.2988 -4.1838 37 1 3.8825 -0.4002 -2.7255 38 1 6.2363 -0.6632 -3.2715 39 1 5.4248 -0.1004 -4.7541 40 1 6.7830 -1.9210 -9.7813 41 1 6.8091 -3.3119 -3.2278 42 1 6.3112 -4.2082 -4.6846 43 1 4.7803 -4.5040 -2.6554 44 1 3.9641 -3.9441 -4.1365 45 1 1.9182 1.5074 3.6095 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607441007.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:03 Heat of formation + Delta-G solvation = -215.423395 kcal Electronic energy + Delta-G solvation = -30668.104821 eV Core-core repulsion = 26264.134913 eV Total energy + Delta-G solvation = -4403.969907 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.17268 -41.22693 -40.07408 -39.27000 -37.54334 -37.13594 -34.99065 -34.68907 -34.43973 -33.00168 -31.38904 -29.13166 -28.31635 -27.84246 -25.73560 -24.63817 -23.52998 -22.56298 -22.08241 -21.28471 -19.97826 -19.48644 -18.83044 -18.29803 -17.96112 -17.54330 -17.46217 -16.98033 -16.75115 -16.35918 -16.19362 -15.97653 -15.88494 -15.51926 -15.19628 -14.85810 -14.51022 -14.30804 -14.21769 -13.99002 -13.63295 -13.56198 -13.35226 -13.14811 -13.10354 -12.87813 -12.69438 -12.63222 -12.55334 -12.33144 -12.24941 -12.16166 -11.96589 -11.93754 -11.87686 -11.73268 -11.06043 -10.89932 -10.62015 -10.13063 -9.77082 -9.01931 -8.28276 -6.81132 1.07062 1.36565 1.44615 1.46870 1.49437 1.60796 1.93969 2.26415 2.48567 2.67899 2.82692 3.06996 3.37394 3.61212 3.63511 3.78806 3.90041 3.94183 3.96848 4.05682 4.16436 4.25930 4.28838 4.43573 4.46281 4.49189 4.53959 4.64502 4.73107 4.78093 4.85243 4.89858 5.05466 5.06525 5.15920 5.29539 5.42990 5.43505 5.50552 5.62748 5.73036 6.13580 6.25370 6.36940 6.90684 6.94128 7.00464 7.41435 8.47271 8.68886 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017046 B = 0.002716 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.218172 B =10308.092362 C =11185.055822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.096 4.096 3 H 0.108 0.892 4 C -0.138 4.138 5 C 0.061 3.939 6 H 0.117 0.883 7 C 0.515 3.485 8 O -0.573 6.573 9 N -0.598 5.598 10 C 0.092 3.908 11 C 0.099 3.901 12 N -0.645 5.645 13 C 0.542 3.458 14 O -0.635 6.635 15 C -0.563 4.563 16 H 0.104 0.896 17 C 0.029 3.971 18 N -0.825 5.825 19 Si 0.995 3.005 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.237 1.237 23 C 0.110 3.890 24 C 0.114 3.886 25 O -0.357 6.357 26 C 0.083 3.917 27 H 0.138 0.862 28 C 0.474 3.526 29 O -0.545 6.545 30 O -0.498 6.498 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.133 0.867 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.131 0.869 38 H 0.060 0.940 39 H 0.110 0.890 40 H 0.273 0.727 41 H 0.051 0.949 42 H 0.067 0.933 43 H 0.092 0.908 44 H 0.070 0.930 45 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.110 12.358 17.649 27.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.115 4.115 3 H 0.126 0.874 4 C -0.175 4.175 5 C 0.000 4.000 6 H 0.134 0.866 7 C 0.303 3.697 8 O -0.452 6.452 9 N -0.332 5.332 10 C -0.031 4.031 11 C -0.025 4.025 12 N -0.382 5.382 13 C 0.348 3.652 14 O -0.522 6.522 15 C -0.599 4.599 16 H 0.122 0.878 17 C -0.186 4.186 18 N -0.455 5.455 19 Si 0.814 3.186 20 H -0.192 1.192 21 H -0.205 1.205 22 H -0.160 1.160 23 C -0.014 4.014 24 C -0.010 4.010 25 O -0.275 6.275 26 C 0.024 3.976 27 H 0.155 0.845 28 C 0.316 3.684 29 O -0.434 6.434 30 O -0.313 6.313 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.151 0.849 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.148 0.852 38 H 0.078 0.922 39 H 0.128 0.872 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.085 0.915 43 H 0.110 0.890 44 H 0.089 0.911 45 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -16.496 10.804 17.451 26.332 hybrid contribution 0.976 0.259 -0.061 1.012 sum -15.520 11.063 17.391 25.801 Atomic orbital electron populations 1.21767 0.90319 1.03390 1.04247 1.22715 0.99523 0.99687 0.89573 0.87355 1.23660 0.92168 1.01809 0.99858 1.23045 1.01074 0.94076 0.81769 0.86561 1.20846 0.76873 0.90466 0.81469 1.90683 1.54822 1.33499 1.66220 1.48029 1.65111 1.11222 1.08826 1.22689 0.98135 0.85283 0.96950 1.22189 0.94769 0.88806 0.96711 1.48037 1.71536 1.08673 1.09910 1.18760 0.77082 0.89491 0.79821 1.90553 1.51488 1.40245 1.69901 1.21481 1.48852 0.96413 0.93196 0.87792 1.27011 0.91375 1.01160 0.99070 1.70181 1.34826 1.30547 1.09930 0.85067 0.80054 0.76718 0.76717 1.19173 1.20540 1.16001 1.21470 0.96109 0.89128 0.94737 1.21796 0.95325 0.87969 0.95936 1.88636 1.49632 1.64863 1.24337 1.22682 0.88799 0.92719 0.93442 0.84470 1.23961 0.83401 0.79187 0.81839 1.90757 1.21798 1.66294 1.64589 1.84449 1.42057 1.52739 1.52012 0.90541 0.89841 0.91785 0.84872 0.88939 0.89446 0.85175 0.92170 0.87164 0.91705 0.93120 0.91460 0.88976 0.91144 0.70733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 9.16 71.98 0.66 -0.11 16 2 C -0.10 -0.90 3.11 -9.44 -0.03 -0.93 16 3 H 0.11 0.78 7.84 -2.39 -0.02 0.76 16 4 C -0.14 -1.61 5.27 32.14 0.17 -1.44 16 5 C 0.06 1.27 2.90 30.51 0.09 1.36 16 6 H 0.12 2.09 7.54 -2.39 -0.02 2.08 16 7 C 0.51 14.96 7.11 87.66 0.62 15.58 16 8 O -0.57 -21.92 15.95 15.45 0.25 -21.67 16 9 N -0.60 -16.66 2.94 -817.24 -2.40 -19.06 16 10 C 0.09 2.05 5.84 86.56 0.51 2.55 16 11 C 0.10 3.02 6.52 86.56 0.56 3.59 16 12 N -0.64 -27.61 2.95 -822.33 -2.42 -30.03 16 13 C 0.54 29.90 7.60 86.36 0.66 30.56 16 14 O -0.63 -41.64 14.51 -4.29 -0.06 -41.70 16 15 C -0.56 -29.22 8.88 24.83 0.22 -29.00 16 16 H 0.10 4.55 5.63 -2.91 -0.02 4.54 16 17 C 0.03 1.52 5.49 85.31 0.47 1.99 16 18 N -0.83 -48.92 11.88 21.84 0.26 -48.66 16 19 Si 0.99 37.93 29.56 68.60 2.03 39.96 16 20 H -0.27 -9.93 7.11 99.48 0.71 -9.23 16 21 H -0.28 -10.58 7.11 99.48 0.71 -9.88 16 22 H -0.24 -7.93 7.11 99.48 0.71 -7.22 16 23 C 0.11 4.38 6.57 86.40 0.57 4.95 16 24 C 0.11 3.75 6.59 86.40 0.57 4.32 16 25 O -0.36 -9.28 9.81 -121.04 -1.19 -10.46 16 26 C 0.08 1.35 3.66 30.32 0.11 1.46 16 27 H 0.14 1.81 7.82 -2.39 -0.02 1.79 16 28 C 0.47 8.40 7.51 71.24 0.54 8.94 16 29 O -0.54 -14.84 17.28 28.32 0.49 -14.35 16 30 O -0.50 -4.67 13.42 -51.41 -0.69 -5.36 16 31 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.06 0.39 8.13 -2.39 -0.02 0.37 16 34 H 0.13 0.83 6.41 -2.38 -0.02 0.81 16 35 H 0.09 1.18 7.95 -2.39 -0.02 1.16 16 36 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.13 1.71 4.40 -2.39 -0.01 1.70 16 38 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.11 3.32 5.29 -2.39 -0.01 3.30 16 40 H 0.27 14.76 8.29 -92.71 -0.77 13.99 16 41 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.07 3.06 7.03 -2.39 -0.02 3.04 16 43 H 0.09 3.08 6.99 -2.39 -0.02 3.07 16 44 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 45 H 0.43 0.75 9.10 -74.06 -0.67 0.07 16 Total: -1.00 -91.09 367.12 2.34 -88.75 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 0.38 Total: 18.79 kcal Atomic # 6 Polarization: 38.10 SS G_CDS: 5.71 Total: 43.81 kcal Atomic # 7 Polarization: -93.19 SS G_CDS: -4.57 Total: -97.76 kcal Atomic # 8 Polarization: -92.35 SS G_CDS: -1.20 Total: -93.55 kcal Atomic # 14 Polarization: 37.93 SS G_CDS: 2.03 Total: 39.96 kcal Total: -91.09 2.34 -88.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607441007.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.677 kcal (2) G-P(sol) polarization free energy of solvation -91.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds