Wall clock time and date at job start Sat Apr 11 2020 05:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47061 * 2 1 4 4 N 1.46897 * 109.47355 * 179.97438 * 3 2 1 5 5 C 1.46904 * 110.99903 * 59.15999 * 4 3 2 6 6 C 1.53004 * 109.46822 * 66.04982 * 5 4 3 7 7 N 1.46495 * 109.46809 * 179.97438 * 6 5 4 8 8 C 1.34776 * 119.99817 * 180.02562 * 7 6 5 9 9 O 1.21616 * 120.00189 * 359.97438 * 8 7 6 10 10 C 1.47261 * 120.00134 * 180.27303 * 8 7 6 11 11 N 1.30564 * 125.53881 * 359.42155 * 10 8 7 12 12 C 1.30702 * 115.90305 * 179.77782 * 11 10 8 13 13 C 1.34237 * 115.78402 * 0.51692 * 12 11 10 14 14 S 1.71064 * 109.08970 * 359.72320 * 13 12 11 15 15 C 1.46901 * 110.99981 * 295.21135 * 4 3 2 16 16 C 1.50710 * 109.46891 * 288.24065 * 15 4 3 17 17 O 1.21295 * 119.99720 * 354.29559 * 16 15 4 18 18 N 1.34777 * 120.00021 * 174.29823 * 16 15 4 19 19 C 1.37090 * 119.99857 * 179.97438 * 18 16 15 20 20 H 1.07997 * 120.00463 * 0.02562 * 19 18 16 21 21 C 1.38952 * 119.99732 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99641 * 180.02562 * 21 19 18 23 23 Si 1.86794 * 120.00321 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47628 * 89.99811 * 23 21 19 25 25 H 1.48497 * 109.47331 * 210.00433 * 23 21 19 26 26 H 1.48511 * 109.46901 * 329.99986 * 23 21 19 27 27 H 1.08999 * 109.47343 * 59.99519 * 1 2 3 28 28 H 1.09000 * 109.47393 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46924 * 299.99728 * 1 2 3 30 30 H 1.09002 * 109.47377 * 240.00513 * 2 1 3 31 31 H 1.08992 * 109.47237 * 120.00099 * 2 1 3 32 32 H 1.09003 * 109.46994 * 59.93157 * 3 2 1 33 33 H 1.09002 * 109.47212 * 299.93929 * 3 2 1 34 34 H 1.08993 * 109.47201 * 306.04529 * 5 4 3 35 35 H 1.09002 * 109.46493 * 186.04441 * 5 4 3 36 36 H 1.09003 * 109.47098 * 59.99937 * 6 5 4 37 37 H 1.08997 * 109.47309 * 299.99968 * 6 5 4 38 38 H 0.97006 * 120.00468 * 359.97438 * 7 6 5 39 39 H 1.08000 * 122.10653 * 180.21853 * 12 11 10 40 40 H 1.08002 * 125.45201 * 179.72578 * 13 12 11 41 41 H 1.09000 * 109.47199 * 48.23389 * 15 4 3 42 42 H 1.08996 * 109.47636 * 168.24130 * 15 4 3 43 43 H 0.97002 * 119.99521 * 0.02562 * 18 16 15 44 44 H 0.97003 * 119.99627 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4426 0.0006 5 6 4.0359 0.7394 -1.1766 6 6 3.6724 1.5195 -2.4417 7 7 4.1985 0.8185 -3.6156 8 6 3.9986 1.3250 -4.8484 9 8 3.3812 2.3637 -4.9865 10 6 4.5222 0.6173 -6.0290 11 7 5.2011 -0.4977 -6.0061 12 6 5.5711 -0.9648 -7.1694 13 6 5.2131 -0.2301 -8.2343 14 16 4.3408 1.1410 -7.7004 15 6 4.0349 0.8586 1.2417 16 6 3.7991 1.8121 2.3848 17 8 3.3421 2.9150 2.1702 18 7 4.0962 1.4394 3.6455 19 6 3.8822 2.3069 4.6852 20 1 3.4753 3.2889 4.4942 21 6 4.1890 1.9228 5.9848 22 7 3.9834 2.7542 6.9815 23 14 4.8935 0.2246 6.3153 24 1 6.3758 0.2817 6.2470 25 1 4.4773 -0.2296 7.6664 26 1 4.3873 -0.7284 5.2950 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6756 1.9567 0.8894 33 1 1.6775 1.9561 -0.8905 34 1 3.6017 -0.2590 -1.2280 35 1 5.1202 0.6604 -1.0974 36 1 4.1068 2.5179 -2.3902 37 1 2.5882 1.5986 -2.5208 38 1 4.6913 -0.0098 -3.5055 39 1 6.1338 -1.8814 -7.2673 40 1 5.4396 -0.4669 -9.2635 41 1 3.5260 -0.0838 1.4440 42 1 5.1044 0.6783 1.1338 43 1 4.4620 0.5575 3.8170 44 1 4.1972 2.4859 7.8889 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663689137.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:14 Heat of formation + Delta-G solvation = -9.858258 kcal Electronic energy + Delta-G solvation = -26458.583208 eV Core-core repulsion = 22538.572897 eV Total energy + Delta-G solvation = -3920.010312 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.55056 -39.50428 -38.98140 -37.34542 -35.05396 -33.89448 -32.75339 -31.64952 -31.33969 -29.52316 -27.44927 -26.66329 -25.22269 -23.77304 -22.82308 -22.24503 -20.50586 -20.12018 -19.22125 -18.87812 -18.15076 -17.36872 -16.47672 -16.26255 -15.86613 -15.65116 -15.58852 -15.36883 -14.88763 -14.50892 -14.32278 -13.97998 -13.83186 -13.68697 -13.49293 -13.23842 -13.12779 -12.73015 -12.27382 -12.00933 -11.95453 -11.68302 -11.63700 -11.52625 -11.37032 -11.21236 -11.03573 -10.85242 -10.58691 -10.36829 -10.30876 -10.19945 -9.95697 -9.52720 -9.50326 -9.26083 -8.57607 -8.15200 -7.94918 -6.28759 -3.79888 -0.23840 0.65664 1.21647 1.89950 2.75377 2.82574 3.02903 3.07546 3.15827 3.63160 3.77659 4.02855 4.11950 4.55105 4.58761 4.70997 4.80492 4.83463 4.90852 5.01611 5.12835 5.23536 5.31010 5.37185 5.48827 5.50311 5.60066 5.71495 5.78040 5.81066 5.91301 5.95868 5.97365 6.07160 6.16514 6.24133 6.49250 6.88280 7.08432 7.16951 7.22548 7.60925 7.75686 8.17298 8.63219 8.98347 9.45264 9.87164 10.84496 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.020627 B = 0.001960 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.142966 B =14282.542855 C =14621.578078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.167 4.167 3 C 0.050 3.950 4 N -0.506 5.506 5 C 0.039 3.961 6 C 0.121 3.879 7 N -0.701 5.701 8 C 0.597 3.403 9 O -0.523 6.523 10 C -0.020 4.020 11 N -0.427 5.427 12 C 0.028 3.972 13 C -0.282 4.282 14 S 0.255 5.745 15 C 0.040 3.960 16 C 0.454 3.546 17 O -0.555 6.555 18 N -0.594 5.594 19 C -0.302 4.302 20 H 0.120 0.880 21 C 0.040 3.960 22 N -0.882 5.882 23 Si 0.879 3.121 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.270 1.270 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.045 0.955 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.410 0.590 39 H 0.179 0.821 40 H 0.185 0.815 41 H 0.055 0.945 42 H 0.090 0.910 43 H 0.369 0.631 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.781 -12.524 -28.937 31.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.206 4.206 3 C -0.078 4.078 4 N -0.229 5.229 5 C -0.090 4.090 6 C -0.002 4.002 7 N -0.353 5.353 8 C 0.378 3.622 9 O -0.399 6.399 10 C -0.295 4.295 11 N -0.145 5.145 12 C -0.129 4.129 13 C -0.423 4.423 14 S 0.510 5.490 15 C -0.092 4.092 16 C 0.239 3.761 17 O -0.436 6.436 18 N -0.234 5.234 19 C -0.431 4.431 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.523 5.523 23 Si 0.706 3.294 24 H -0.197 1.197 25 H -0.203 1.203 26 H -0.196 1.196 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.114 0.886 33 H 0.093 0.907 34 H 0.063 0.937 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.245 0.755 39 H 0.196 0.804 40 H 0.202 0.798 41 H 0.073 0.927 42 H 0.108 0.892 43 H 0.202 0.798 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.810 -9.802 -28.898 30.526 hybrid contribution 1.248 -3.673 0.383 3.898 sum 2.058 -13.475 -28.515 31.606 Atomic orbital electron populations 1.21646 0.95315 1.01292 1.02125 1.22229 0.97031 0.99637 1.01673 1.22408 0.86207 0.94817 1.04351 1.61653 1.08137 1.53095 0.99999 1.22291 1.00849 0.95674 0.90150 1.21461 0.99858 0.96766 0.82149 1.45654 1.56549 1.27907 1.05192 1.16648 0.79895 0.83929 0.81680 1.90898 1.40805 1.22543 1.85646 1.27743 1.05805 0.97625 0.98286 1.66811 1.09748 1.09173 1.28740 1.21737 1.03075 1.02623 0.85452 1.26969 1.07670 1.01616 1.06091 1.84161 1.45383 1.19839 0.99630 1.21966 1.00808 0.96197 0.90217 1.19625 0.84519 0.88905 0.83024 1.90568 1.47434 1.22056 1.83558 1.42213 1.58976 1.15720 1.06453 1.19418 1.40479 0.99043 0.84173 0.86276 1.25033 0.97893 0.97983 0.95340 1.69624 1.47586 1.35388 0.99669 0.86680 0.79988 0.84051 0.78692 1.19656 1.20262 1.19586 0.92796 0.93129 0.92263 0.92186 0.91772 0.88619 0.90685 0.93692 0.90102 0.89618 0.90599 0.75467 0.80426 0.79774 0.92749 0.89224 0.79830 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.91 37.16 0.37 -1.27 16 2 C -0.17 -2.01 5.29 -26.73 -0.14 -2.15 16 3 C 0.05 0.73 4.80 -3.82 -0.02 0.71 16 4 N -0.51 -7.58 4.31 -236.06 -1.02 -8.59 16 5 C 0.04 0.43 4.81 -3.82 -0.02 0.41 16 6 C 0.12 1.37 5.60 -4.04 -0.02 1.35 16 7 N -0.70 -7.06 5.55 -61.44 -0.34 -7.40 16 8 C 0.60 6.98 7.81 -12.59 -0.10 6.88 16 9 O -0.52 -7.67 16.94 5.26 0.09 -7.58 16 10 C -0.02 -0.19 7.46 -14.42 -0.11 -0.30 16 11 N -0.43 -3.81 10.24 -11.50 -0.12 -3.93 16 12 C 0.03 0.18 11.24 -19.44 -0.22 -0.04 16 13 C -0.28 -1.48 11.09 29.32 0.33 -1.15 16 14 S 0.26 1.84 23.03 -107.50 -2.48 -0.63 16 15 C 0.04 0.63 5.34 -4.97 -0.03 0.61 16 16 C 0.45 10.10 7.36 -10.98 -0.08 10.02 16 17 O -0.56 -14.69 14.70 5.54 0.08 -14.61 16 18 N -0.59 -13.95 5.09 -10.96 -0.06 -14.01 16 19 C -0.30 -8.50 10.16 -14.94 -0.15 -8.65 16 20 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 21 C 0.04 1.10 5.50 -17.47 -0.10 1.00 16 22 N -0.88 -25.79 13.96 55.50 0.77 -25.02 16 23 Si 0.88 19.30 27.74 -169.99 -4.71 14.58 16 24 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 25 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.64 6.26 -51.93 -0.33 0.32 16 31 H 0.06 0.82 6.29 -51.93 -0.33 0.50 16 32 H 0.10 1.75 6.54 -51.93 -0.34 1.41 16 33 H 0.07 1.02 6.51 -51.93 -0.34 0.69 16 34 H 0.05 0.44 5.97 -51.93 -0.31 0.12 16 35 H 0.08 0.81 7.86 -51.93 -0.41 0.40 16 36 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.08 0.91 6.57 -51.93 -0.34 0.56 16 38 H 0.41 3.39 8.13 -40.82 -0.33 3.06 16 39 H 0.18 0.68 8.06 -52.49 -0.42 0.26 16 40 H 0.18 0.40 8.06 -52.49 -0.42 -0.02 16 41 H 0.05 0.77 5.97 -51.93 -0.31 0.46 16 42 H 0.09 1.24 7.81 -51.93 -0.41 0.84 16 43 H 0.37 7.61 5.76 -40.82 -0.24 7.38 16 44 H 0.27 7.36 8.31 -40.82 -0.34 7.03 16 LS Contribution 376.71 15.07 5.68 5.68 Total: -1.00 -34.46 376.71 -8.15 -42.61 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -5.76 Total: 11.49 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: -0.29 Total: 7.42 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: -0.76 Total: -58.95 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: 0.17 Total: -22.19 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -4.71 Total: 14.58 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -2.48 Total: -0.63 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.46 -8.15 -42.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663689137.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.754 kcal (2) G-P(sol) polarization free energy of solvation -34.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds