Wall clock time and date at job start Sat Apr 11 2020 05:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47061 * 2 1 4 4 N 1.46897 * 109.47355 * 179.97438 * 3 2 1 5 5 C 1.46904 * 110.99903 * 59.15999 * 4 3 2 6 6 C 1.53004 * 109.46822 * 66.04982 * 5 4 3 7 7 N 1.46495 * 109.46809 * 179.97438 * 6 5 4 8 8 C 1.34776 * 119.99817 * 180.02562 * 7 6 5 9 9 O 1.21616 * 120.00189 * 359.97438 * 8 7 6 10 10 C 1.47261 * 120.00134 * 180.27303 * 8 7 6 11 11 N 1.30564 * 125.53881 * 359.42155 * 10 8 7 12 12 C 1.30702 * 115.90305 * 179.77782 * 11 10 8 13 13 C 1.34237 * 115.78402 * 0.51692 * 12 11 10 14 14 S 1.71064 * 109.08970 * 359.72320 * 13 12 11 15 15 C 1.46901 * 110.99981 * 295.21135 * 4 3 2 16 16 C 1.50710 * 109.46891 * 288.24065 * 15 4 3 17 17 O 1.21295 * 119.99720 * 354.29559 * 16 15 4 18 18 N 1.34777 * 120.00021 * 174.29823 * 16 15 4 19 19 C 1.37090 * 119.99857 * 179.97438 * 18 16 15 20 20 H 1.07997 * 120.00463 * 0.02562 * 19 18 16 21 21 C 1.38952 * 119.99732 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99641 * 180.02562 * 21 19 18 23 23 Si 1.86794 * 120.00321 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47628 * 89.99811 * 23 21 19 25 25 H 1.48497 * 109.47331 * 210.00433 * 23 21 19 26 26 H 1.48511 * 109.46901 * 329.99986 * 23 21 19 27 27 H 1.08999 * 109.47343 * 59.99519 * 1 2 3 28 28 H 1.09000 * 109.47393 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46924 * 299.99728 * 1 2 3 30 30 H 1.09002 * 109.47377 * 240.00513 * 2 1 3 31 31 H 1.08992 * 109.47237 * 120.00099 * 2 1 3 32 32 H 1.09003 * 109.46994 * 59.93157 * 3 2 1 33 33 H 1.09002 * 109.47212 * 299.93929 * 3 2 1 34 34 H 1.08993 * 109.47201 * 306.04529 * 5 4 3 35 35 H 1.09002 * 109.46493 * 186.04441 * 5 4 3 36 36 H 1.09003 * 109.47098 * 59.99937 * 6 5 4 37 37 H 1.08997 * 109.47309 * 299.99968 * 6 5 4 38 38 H 0.97006 * 120.00468 * 359.97438 * 7 6 5 39 39 H 1.08000 * 122.10653 * 180.21853 * 12 11 10 40 40 H 1.08002 * 125.45201 * 179.72578 * 13 12 11 41 41 H 1.09000 * 109.47199 * 48.23389 * 15 4 3 42 42 H 1.08996 * 109.47636 * 168.24130 * 15 4 3 43 43 H 0.97002 * 119.99521 * 0.02562 * 18 16 15 44 44 H 0.97003 * 119.99627 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4426 0.0006 5 6 4.0359 0.7394 -1.1766 6 6 3.6724 1.5195 -2.4417 7 7 4.1985 0.8185 -3.6156 8 6 3.9986 1.3250 -4.8484 9 8 3.3812 2.3637 -4.9865 10 6 4.5222 0.6173 -6.0290 11 7 5.2011 -0.4977 -6.0061 12 6 5.5711 -0.9648 -7.1694 13 6 5.2131 -0.2301 -8.2343 14 16 4.3408 1.1410 -7.7004 15 6 4.0349 0.8586 1.2417 16 6 3.7991 1.8121 2.3848 17 8 3.3421 2.9150 2.1702 18 7 4.0962 1.4394 3.6455 19 6 3.8822 2.3069 4.6852 20 1 3.4753 3.2889 4.4942 21 6 4.1890 1.9228 5.9848 22 7 3.9834 2.7542 6.9815 23 14 4.8935 0.2246 6.3153 24 1 6.3758 0.2817 6.2470 25 1 4.4773 -0.2296 7.6664 26 1 4.3873 -0.7284 5.2950 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6756 1.9567 0.8894 33 1 1.6775 1.9561 -0.8905 34 1 3.6017 -0.2590 -1.2280 35 1 5.1202 0.6604 -1.0974 36 1 4.1068 2.5179 -2.3902 37 1 2.5882 1.5986 -2.5208 38 1 4.6913 -0.0098 -3.5055 39 1 6.1338 -1.8814 -7.2673 40 1 5.4396 -0.4669 -9.2635 41 1 3.5260 -0.0838 1.4440 42 1 5.1044 0.6783 1.1338 43 1 4.4620 0.5575 3.8170 44 1 4.1972 2.4859 7.8889 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663689137.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:13 Heat of formation + Delta-G solvation = -38.806550 kcal Electronic energy + Delta-G solvation = -26459.838500 eV Core-core repulsion = 22538.572897 eV Total energy + Delta-G solvation = -3921.265604 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.27852 -40.66109 -40.04830 -38.78850 -36.09179 -35.81070 -33.82621 -33.64339 -32.02996 -30.51486 -28.68079 -27.38740 -26.72606 -25.14894 -23.76076 -22.99117 -21.61349 -21.14424 -20.84222 -19.95980 -19.51691 -18.08371 -17.65757 -17.37034 -17.19670 -16.79188 -16.63430 -16.38509 -16.07813 -15.52487 -15.26722 -15.12497 -15.07058 -14.85967 -14.64063 -14.37776 -14.27700 -14.18942 -13.94755 -13.22759 -13.10315 -12.74370 -12.65821 -12.49209 -12.47948 -12.39774 -12.36875 -12.11610 -11.96403 -11.70547 -11.52504 -11.32275 -10.97612 -10.73392 -10.37623 -10.30239 -10.20481 -9.91068 -9.12353 -8.38541 -5.98900 -0.82135 0.09473 0.72288 1.28577 1.30917 1.37257 1.45621 1.92363 2.01801 2.10307 2.25052 2.69941 3.07824 3.17639 3.32158 3.78333 3.94279 3.97941 4.02727 4.12986 4.20176 4.30032 4.35684 4.40001 4.41093 4.45760 4.51680 4.67076 4.80625 4.85372 4.97134 5.00726 5.08184 5.17306 5.19530 5.26176 5.40893 5.55986 5.90891 6.02626 6.15667 6.20698 6.51155 6.63530 6.92679 6.95676 7.44302 8.03107 8.79349 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.020627 B = 0.001960 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.142966 B =14282.542855 C =14621.578078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.157 4.157 3 C 0.054 3.946 4 N -0.533 5.533 5 C 0.048 3.952 6 C 0.129 3.871 7 N -0.689 5.689 8 C 0.595 3.405 9 O -0.565 6.565 10 C -0.060 4.060 11 N -0.431 5.431 12 C 0.011 3.989 13 C -0.254 4.254 14 S 0.259 5.741 15 C 0.053 3.947 16 C 0.452 3.548 17 O -0.606 6.606 18 N -0.594 5.594 19 C -0.324 4.324 20 H 0.053 0.947 21 C -0.018 4.018 22 N -0.937 5.937 23 Si 0.966 3.034 24 H -0.257 1.257 25 H -0.277 1.277 26 H -0.230 1.230 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.040 0.960 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.421 0.579 39 H 0.207 0.793 40 H 0.221 0.779 41 H 0.085 0.915 42 H 0.124 0.876 43 H 0.389 0.611 44 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.624 -17.382 -31.566 36.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.196 4.196 3 C -0.074 4.074 4 N -0.256 5.256 5 C -0.080 4.080 6 C 0.004 3.996 7 N -0.341 5.341 8 C 0.378 3.622 9 O -0.444 6.444 10 C -0.332 4.332 11 N -0.150 5.150 12 C -0.146 4.146 13 C -0.394 4.394 14 S 0.513 5.487 15 C -0.078 4.078 16 C 0.240 3.760 17 O -0.490 6.490 18 N -0.237 5.237 19 C -0.454 4.454 20 H 0.071 0.929 21 C -0.217 4.217 22 N -0.578 5.578 23 Si 0.785 3.215 24 H -0.181 1.181 25 H -0.202 1.202 26 H -0.153 1.153 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.059 0.941 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.117 0.883 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.258 0.742 39 H 0.223 0.777 40 H 0.238 0.762 41 H 0.103 0.897 42 H 0.141 0.859 43 H 0.224 0.776 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.666 -14.701 -31.547 34.906 hybrid contribution 0.649 -2.032 1.021 2.365 sum 3.315 -16.733 -30.525 34.968 Atomic orbital electron populations 1.21650 0.94931 1.02249 1.01564 1.22144 0.97368 0.97520 1.02565 1.22242 0.86524 0.96404 1.02194 1.61495 1.08264 1.54908 1.00964 1.22284 1.01871 0.96027 0.87776 1.21249 0.99190 0.96052 0.83064 1.45500 1.56170 1.27985 1.04481 1.16954 0.79214 0.83499 0.82532 1.90866 1.42807 1.24386 1.86339 1.27357 1.08407 0.98888 0.98565 1.66793 1.09220 1.08726 1.30264 1.22223 1.03631 1.03787 0.84946 1.27424 1.04910 0.99562 1.07549 1.84195 1.45426 1.20792 0.98322 1.21877 1.03270 0.94866 0.87804 1.20954 0.81856 0.89174 0.84032 1.90552 1.48985 1.24917 1.84520 1.42030 1.59784 1.15912 1.05926 1.18972 1.41968 0.97931 0.86492 0.92884 1.26131 0.97592 1.03814 0.94114 1.69817 1.48927 1.38590 1.00472 0.85357 0.79481 0.77263 0.79353 1.18137 1.20222 1.15308 0.92212 0.91324 0.94106 0.89790 0.92010 0.93274 0.90436 0.91100 0.88306 0.91991 0.91480 0.74164 0.77671 0.76240 0.89695 0.85859 0.77570 0.91270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 9.91 71.98 0.71 -2.38 16 2 C -0.16 -3.46 5.29 30.59 0.16 -3.30 16 3 C 0.05 1.59 4.80 86.30 0.41 2.00 16 4 N -0.53 -15.31 4.31 -900.76 -3.88 -19.19 16 5 C 0.05 0.93 4.81 86.30 0.41 1.34 16 6 C 0.13 2.82 5.60 86.38 0.48 3.30 16 7 N -0.69 -13.15 5.55 -466.54 -2.59 -15.74 16 8 C 0.59 13.87 7.81 86.62 0.68 14.54 16 9 O -0.57 -17.15 16.94 -4.08 -0.07 -17.22 16 10 C -0.06 -1.11 7.46 87.26 0.65 -0.46 16 11 N -0.43 -6.80 10.24 -190.31 -1.95 -8.75 16 12 C 0.01 0.10 11.24 83.95 0.94 1.05 16 13 C -0.25 -1.78 11.09 66.91 0.74 -1.03 16 14 S 0.26 3.35 23.03 -56.49 -1.30 2.05 16 15 C 0.05 1.56 5.34 85.56 0.46 2.01 16 16 C 0.45 20.34 7.36 87.66 0.65 20.99 16 17 O -0.61 -33.94 14.70 -3.08 -0.05 -33.99 16 18 N -0.59 -27.92 5.09 -306.98 -1.56 -29.48 16 19 C -0.32 -19.11 10.16 84.04 0.85 -18.26 16 20 H 0.05 3.74 7.39 -2.91 -0.02 3.72 16 21 C -0.02 -1.03 5.50 84.93 0.47 -0.56 16 22 N -0.94 -57.06 13.96 21.66 0.30 -56.76 16 23 Si 0.97 38.78 27.74 68.60 1.90 40.68 16 24 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 25 H -0.28 -11.10 7.11 99.48 0.71 -10.40 16 26 H -0.23 -7.67 6.52 99.48 0.65 -7.02 16 27 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.08 1.47 6.26 -2.39 -0.01 1.46 16 31 H 0.06 1.40 6.29 -2.39 -0.02 1.39 16 32 H 0.05 1.90 6.54 -2.39 -0.02 1.88 16 33 H 0.08 2.18 6.51 -2.39 -0.02 2.16 16 34 H 0.07 1.05 5.97 -2.39 -0.01 1.04 16 35 H 0.10 1.60 7.86 -2.39 -0.02 1.58 16 36 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.07 1.60 6.57 -2.39 -0.02 1.58 16 38 H 0.42 6.06 8.13 -92.70 -0.75 5.31 16 39 H 0.21 0.73 8.06 -2.91 -0.02 0.70 16 40 H 0.22 -0.13 8.06 -2.91 -0.02 -0.15 16 41 H 0.09 2.05 5.97 -2.39 -0.01 2.04 16 42 H 0.12 2.88 7.81 -2.39 -0.02 2.86 16 43 H 0.39 14.99 5.76 -92.71 -0.53 14.46 16 44 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -84.07 376.71 -1.85 -85.93 By element: Atomic # 1 Polarization: 33.50 SS G_CDS: -0.28 Total: 33.22 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: 7.62 Total: 19.25 kcal Atomic # 7 Polarization: -120.24 SS G_CDS: -9.68 Total: -129.92 kcal Atomic # 8 Polarization: -51.10 SS G_CDS: -0.11 Total: -51.21 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 1.90 Total: 40.68 kcal Atomic # 16 Polarization: 3.35 SS G_CDS: -1.30 Total: 2.05 kcal Total: -84.07 -1.85 -85.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663689137.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.120 kcal (2) G-P(sol) polarization free energy of solvation -84.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds