Wall clock time and date at job start Sat Apr 11 2020 05:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46867 * 2 1 4 4 N 1.46505 * 109.46969 * 179.97438 * 3 2 1 5 5 C 1.46500 * 120.00102 * 85.02676 * 4 3 2 6 6 C 1.52994 * 109.46874 * 95.24095 * 5 4 3 7 7 N 1.46500 * 109.46874 * 180.02562 * 6 5 4 8 8 C 1.34782 * 120.00307 * 180.02562 * 7 6 5 9 9 O 1.21284 * 119.99577 * 0.02562 * 8 7 6 10 10 C 1.50701 * 120.00112 * 179.97438 * 8 7 6 11 11 S 1.80998 * 109.46879 * 179.97438 * 10 8 7 12 12 C 1.76202 * 99.99969 * 179.97438 * 11 10 8 13 13 H 1.08003 * 119.99658 * 0.02562 * 12 11 10 14 14 C 1.38800 * 120.00083 * 179.97438 * 12 11 10 15 15 N 1.31634 * 119.99776 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99799 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47270 * 60.00434 * 16 14 12 18 18 H 1.48507 * 109.46974 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47395 * 300.00060 * 16 14 12 20 20 C 1.34774 * 119.99687 * 265.02360 * 4 3 2 21 21 O 1.21573 * 120.00644 * 5.39680 * 20 4 3 22 22 C 1.47711 * 119.99860 * 185.39803 * 20 4 3 23 23 C 1.41510 * 126.51998 * 174.81810 * 22 20 4 24 24 C 1.35359 * 105.50269 * 179.90314 * 23 22 20 25 25 N 1.35038 * 107.23242 * 0.35563 * 24 23 22 26 26 H 0.96996 * 124.88992 * 179.75937 * 25 24 23 27 27 N 1.28468 * 110.22579 * 359.76750 * 25 24 23 28 28 H 1.08990 * 109.47570 * 299.99999 * 1 2 3 29 29 H 1.09004 * 109.46979 * 60.00607 * 1 2 3 30 30 H 1.09007 * 109.46881 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47570 * 240.00001 * 2 1 3 32 32 H 1.09004 * 109.46979 * 119.99392 * 2 1 3 33 33 H 1.09003 * 109.47331 * 59.99845 * 3 2 1 34 34 H 1.09000 * 109.47438 * 299.99873 * 3 2 1 35 35 H 1.08992 * 109.46668 * 215.24025 * 5 4 3 36 36 H 1.08999 * 109.46870 * 335.24078 * 5 4 3 37 37 H 1.08997 * 109.47821 * 299.99663 * 6 5 4 38 38 H 1.08999 * 109.47386 * 60.00298 * 6 5 4 39 39 H 0.97001 * 120.00199 * 0.02562 * 7 6 5 40 40 H 1.09000 * 109.46989 * 299.99586 * 10 8 7 41 41 H 1.08999 * 109.46933 * 60.00025 * 10 8 7 42 42 H 0.96997 * 119.99279 * 179.97438 * 15 14 12 43 43 H 1.07998 * 127.24577 * 0.02562 * 23 22 20 44 44 H 1.08000 * 126.38869 * 180.15230 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.2380 1.3324 -1.2630 6 6 4.6073 2.7308 -1.7619 7 7 5.3398 2.6207 -3.0258 8 6 5.7697 3.7325 -3.6547 9 8 5.5505 4.8242 -3.1740 10 6 6.5238 3.6192 -4.9546 11 16 6.9605 5.2735 -5.5449 12 6 7.8079 4.8540 -7.0317 13 1 7.9173 3.8181 -7.3170 14 6 8.3338 5.8548 -7.8369 15 7 8.1999 7.1174 -7.4894 16 14 9.2315 5.4100 -9.4135 17 1 8.3119 4.6706 -10.3150 18 1 9.6940 6.6504 -10.0865 19 1 10.4027 4.5557 -9.0921 20 6 4.1783 1.5440 1.1637 21 8 3.5741 1.5366 2.2186 22 6 5.6505 1.6642 1.1567 23 6 6.4831 1.8802 2.2804 24 6 7.7455 1.9178 1.7934 25 7 7.6640 1.7425 0.4569 26 1 8.4221 1.7289 -0.1481 27 7 6.4380 1.5963 0.1020 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6765 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 5.1464 0.7508 -1.1064 36 1 3.6118 0.8358 -2.0042 37 1 3.6989 3.3124 -1.9185 38 1 5.2335 3.2274 -1.0207 39 1 5.5155 1.7475 -3.4101 40 1 7.4321 3.0373 -4.7981 41 1 5.8974 3.1229 -5.6958 42 1 8.5678 7.8168 -8.0519 43 1 6.1761 1.9898 3.3100 44 1 8.6492 2.0644 2.3663 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688459316.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:17 Heat of formation + Delta-G solvation = 7.974083 kcal Electronic energy + Delta-G solvation = -26747.041133 eV Core-core repulsion = 22827.804090 eV Total energy + Delta-G solvation = -3919.237043 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.92682 -40.01520 -39.04155 -36.65433 -34.82114 -33.44052 -32.45110 -31.96807 -30.98247 -30.19280 -28.06485 -26.86115 -25.50694 -23.96538 -23.03923 -22.11538 -21.55077 -20.47373 -19.42160 -18.59507 -17.85455 -17.21184 -16.67768 -16.31027 -15.95428 -15.69098 -15.30162 -15.09819 -14.83133 -14.79125 -14.21021 -14.14055 -13.82709 -13.76320 -13.55673 -13.32254 -13.14668 -12.58933 -12.45387 -12.34340 -12.14485 -12.10364 -11.62990 -11.51973 -11.06852 -11.06245 -10.97784 -10.89634 -10.79496 -10.32583 -9.85116 -9.71215 -9.47820 -9.43948 -9.08560 -8.96145 -8.82355 -8.25750 -6.52422 -6.23772 -3.94587 1.31083 1.87495 2.43311 2.72563 3.10136 3.11457 3.16430 3.21080 3.25982 3.32267 3.74869 4.12517 4.18339 4.53863 4.62965 4.63895 4.76159 4.83067 4.88211 4.99656 5.11186 5.17412 5.21026 5.29343 5.35439 5.39256 5.47668 5.50777 5.62713 5.70674 5.73349 5.82118 5.87362 5.92807 5.96940 6.11131 6.11611 6.29480 6.61938 6.69352 7.04461 7.53694 7.56751 7.72426 7.91791 8.32601 8.63330 9.21286 10.83566 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014369 B = 0.002376 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.209348 B =11783.583506 C =13096.601404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.138 4.138 3 C 0.113 3.887 4 N -0.599 5.599 5 C 0.097 3.903 6 C 0.115 3.885 7 N -0.731 5.731 8 C 0.531 3.469 9 O -0.518 6.518 10 C -0.152 4.152 11 S -0.061 6.061 12 C -0.536 4.536 13 H 0.072 0.928 14 C 0.073 3.927 15 N -0.868 5.868 16 Si 0.919 3.081 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.274 1.274 20 C 0.607 3.393 21 O -0.530 6.530 22 C -0.020 4.020 23 C -0.180 4.180 24 C -0.012 4.012 25 N -0.380 5.380 26 H 0.448 0.552 27 N -0.247 5.247 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.107 0.893 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.397 0.603 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.269 0.731 43 H 0.162 0.838 44 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.297 -17.628 17.314 25.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.177 4.177 3 C -0.009 4.009 4 N -0.331 5.331 5 C -0.027 4.027 6 C -0.011 4.011 7 N -0.386 5.386 8 C 0.317 3.683 9 O -0.392 6.392 10 C -0.303 4.303 11 S 0.166 5.834 12 C -0.684 4.684 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.503 5.503 16 Si 0.745 3.255 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.200 1.200 20 C 0.393 3.607 21 O -0.404 6.404 22 C -0.181 4.181 23 C -0.208 4.208 24 C -0.156 4.156 25 N -0.093 5.093 26 H 0.293 0.707 27 N -0.085 5.085 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.125 0.875 36 H 0.101 0.899 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.231 0.769 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.079 0.921 43 H 0.179 0.821 44 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -7.035 -15.740 17.548 24.600 hybrid contribution 1.502 -1.774 -1.308 2.667 sum -5.533 -17.513 16.240 24.517 Atomic orbital electron populations 1.21692 0.94981 1.01964 1.02115 1.21875 0.96291 0.96961 1.02569 1.21648 0.78106 0.97361 1.03805 1.47651 1.06812 1.72506 1.06108 1.21984 0.98240 0.97386 0.85103 1.21526 0.96589 0.96823 0.86160 1.45768 1.59453 1.09228 1.24163 1.20283 0.78597 0.83796 0.85604 1.90712 1.55467 1.26666 1.66361 1.23518 1.02009 1.08278 0.96458 1.85429 1.72030 0.99160 1.26788 1.22824 1.41619 0.95540 1.08456 0.91000 1.24996 0.95834 0.94455 0.98312 1.70011 1.43206 0.99136 1.37923 0.86226 0.79657 0.77922 0.81700 1.19923 1.20808 1.19974 1.16987 0.84344 0.75854 0.83486 1.90788 1.68552 1.50527 1.30557 1.21884 0.94326 1.10759 0.91081 1.21761 0.90934 1.07824 1.00257 1.22976 1.00577 1.07000 0.85058 1.43541 1.06978 1.51206 1.07620 0.70689 1.73743 0.90419 1.18582 1.25735 0.92399 0.92481 0.92476 0.91822 0.91493 0.89328 0.90171 0.87478 0.89912 0.92107 0.91244 0.76936 0.89353 0.89244 0.92117 0.82059 0.79791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.16 0.37 -0.59 16 2 C -0.14 -1.05 6.26 -26.73 -0.17 -1.22 16 3 C 0.11 1.00 5.40 -4.04 -0.02 0.98 16 4 N -0.60 -6.15 2.48 -174.85 -0.43 -6.58 16 5 C 0.10 0.88 5.11 -4.04 -0.02 0.86 16 6 C 0.11 1.40 5.43 -4.04 -0.02 1.38 16 7 N -0.73 -9.36 5.56 -60.30 -0.33 -9.69 16 8 C 0.53 9.72 7.85 -10.98 -0.09 9.63 16 9 O -0.52 -11.84 15.86 5.55 0.09 -11.75 16 10 C -0.15 -2.97 6.16 36.01 0.22 -2.75 16 11 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 12 C -0.54 -15.06 9.50 30.94 0.29 -14.77 16 13 H 0.07 1.90 7.80 -52.48 -0.41 1.49 16 14 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 15 N -0.87 -25.99 13.22 55.49 0.73 -25.25 16 16 Si 0.92 21.13 29.55 -169.99 -5.02 16.11 16 17 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 20 C 0.61 7.57 7.63 -12.39 -0.09 7.47 16 21 O -0.53 -7.87 16.48 5.30 0.09 -7.78 16 22 C -0.02 -0.23 6.49 -82.76 -0.54 -0.77 16 23 C -0.18 -1.72 10.81 -39.36 -0.43 -2.15 16 24 C -0.01 -0.08 12.02 -17.17 -0.21 -0.29 16 25 N -0.38 -2.89 6.83 30.47 0.21 -2.68 16 26 H 0.45 2.17 8.96 -190.44 -1.71 0.47 16 27 N -0.25 -2.50 7.31 33.42 0.24 -2.26 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.88 7.35 -51.93 -0.38 0.50 16 34 H 0.08 0.61 8.11 -51.93 -0.42 0.19 16 35 H 0.11 0.96 5.63 -51.93 -0.29 0.67 16 36 H 0.08 0.59 8.03 -51.93 -0.42 0.17 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 1.01 6.59 -51.93 -0.34 0.67 16 39 H 0.40 3.77 8.47 -40.82 -0.35 3.42 16 40 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 41 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 42 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 44 H 0.19 0.58 8.06 -52.49 -0.42 0.15 16 LS Contribution 387.77 15.07 5.84 5.84 Total: -1.00 -37.74 387.77 -9.27 -47.02 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -7.68 Total: 1.11 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -0.79 Total: -0.24 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: 0.42 Total: -46.46 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: 0.18 Total: -19.53 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.74 -9.27 -47.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688459316.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.990 kcal (2) G-P(sol) polarization free energy of solvation -37.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds