Wall clock time and date at job start Sat Apr 11 2020 05:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46867 * 2 1 4 4 N 1.46505 * 109.46969 * 179.97438 * 3 2 1 5 5 C 1.46500 * 120.00102 * 85.02676 * 4 3 2 6 6 C 1.52994 * 109.46874 * 95.24095 * 5 4 3 7 7 N 1.46500 * 109.46874 * 180.02562 * 6 5 4 8 8 C 1.34782 * 120.00307 * 180.02562 * 7 6 5 9 9 O 1.21284 * 119.99577 * 0.02562 * 8 7 6 10 10 C 1.50701 * 120.00112 * 179.97438 * 8 7 6 11 11 S 1.80998 * 109.46879 * 179.97438 * 10 8 7 12 12 C 1.76202 * 99.99969 * 179.97438 * 11 10 8 13 13 H 1.08003 * 119.99658 * 0.02562 * 12 11 10 14 14 C 1.38800 * 120.00083 * 179.97438 * 12 11 10 15 15 N 1.31634 * 119.99776 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99799 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47270 * 60.00434 * 16 14 12 18 18 H 1.48507 * 109.46974 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47395 * 300.00060 * 16 14 12 20 20 C 1.34774 * 119.99687 * 265.02360 * 4 3 2 21 21 O 1.21573 * 120.00644 * 5.39680 * 20 4 3 22 22 C 1.47711 * 119.99860 * 185.39803 * 20 4 3 23 23 C 1.41510 * 126.51998 * 174.81810 * 22 20 4 24 24 C 1.35359 * 105.50269 * 179.90314 * 23 22 20 25 25 N 1.35038 * 107.23242 * 0.35563 * 24 23 22 26 26 H 0.96996 * 124.88992 * 179.75937 * 25 24 23 27 27 N 1.28468 * 110.22579 * 359.76750 * 25 24 23 28 28 H 1.08990 * 109.47570 * 299.99999 * 1 2 3 29 29 H 1.09004 * 109.46979 * 60.00607 * 1 2 3 30 30 H 1.09007 * 109.46881 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47570 * 240.00001 * 2 1 3 32 32 H 1.09004 * 109.46979 * 119.99392 * 2 1 3 33 33 H 1.09003 * 109.47331 * 59.99845 * 3 2 1 34 34 H 1.09000 * 109.47438 * 299.99873 * 3 2 1 35 35 H 1.08992 * 109.46668 * 215.24025 * 5 4 3 36 36 H 1.08999 * 109.46870 * 335.24078 * 5 4 3 37 37 H 1.08997 * 109.47821 * 299.99663 * 6 5 4 38 38 H 1.08999 * 109.47386 * 60.00298 * 6 5 4 39 39 H 0.97001 * 120.00199 * 0.02562 * 7 6 5 40 40 H 1.09000 * 109.46989 * 299.99586 * 10 8 7 41 41 H 1.08999 * 109.46933 * 60.00025 * 10 8 7 42 42 H 0.96997 * 119.99279 * 179.97438 * 15 14 12 43 43 H 1.07998 * 127.24577 * 0.02562 * 23 22 20 44 44 H 1.08000 * 126.38869 * 180.15230 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.2380 1.3324 -1.2630 6 6 4.6073 2.7308 -1.7619 7 7 5.3398 2.6207 -3.0258 8 6 5.7697 3.7325 -3.6547 9 8 5.5505 4.8242 -3.1740 10 6 6.5238 3.6192 -4.9546 11 16 6.9605 5.2735 -5.5449 12 6 7.8079 4.8540 -7.0317 13 1 7.9173 3.8181 -7.3170 14 6 8.3338 5.8548 -7.8369 15 7 8.1999 7.1174 -7.4894 16 14 9.2315 5.4100 -9.4135 17 1 8.3119 4.6706 -10.3150 18 1 9.6940 6.6504 -10.0865 19 1 10.4027 4.5557 -9.0921 20 6 4.1783 1.5440 1.1637 21 8 3.5741 1.5366 2.2186 22 6 5.6505 1.6642 1.1567 23 6 6.4831 1.8802 2.2804 24 6 7.7455 1.9178 1.7934 25 7 7.6640 1.7425 0.4569 26 1 8.4221 1.7289 -0.1481 27 7 6.4380 1.5963 0.1020 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6765 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 5.1464 0.7508 -1.1064 36 1 3.6118 0.8358 -2.0042 37 1 3.6989 3.3124 -1.9185 38 1 5.2335 3.2274 -1.0207 39 1 5.5155 1.7475 -3.4101 40 1 7.4321 3.0373 -4.7981 41 1 5.8974 3.1229 -5.6958 42 1 8.5678 7.8168 -8.0519 43 1 6.1761 1.9898 3.3100 44 1 8.6492 2.0644 2.3663 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688459316.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:16 Heat of formation + Delta-G solvation = -19.646285 kcal Electronic energy + Delta-G solvation = -26748.238842 eV Core-core repulsion = 22827.804090 eV Total energy + Delta-G solvation = -3920.434752 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.61292 -40.95537 -40.41917 -37.61790 -35.86868 -34.57302 -34.34211 -32.67071 -31.65361 -31.54573 -29.21284 -27.68647 -27.55891 -24.83290 -23.89801 -22.75815 -22.23286 -21.83986 -20.26945 -19.79896 -19.27485 -18.13807 -17.63690 -17.58313 -17.06036 -16.86636 -16.69824 -16.54995 -15.86469 -15.74223 -15.60700 -15.19820 -14.87787 -14.68862 -14.57378 -14.36462 -14.18933 -13.98925 -13.58334 -13.34457 -13.15491 -12.95008 -12.85821 -12.79630 -12.62494 -12.56946 -12.24617 -11.74250 -11.68127 -11.59695 -11.24094 -11.11704 -10.99049 -10.47680 -10.25267 -10.20030 -10.00128 -9.81157 -8.65441 -8.33337 -6.11367 0.49598 1.23584 1.26974 1.44691 1.46425 1.55190 1.64669 1.72669 2.09510 2.28658 2.30162 2.48183 3.00833 3.30290 3.37802 3.84395 3.86415 3.98318 4.05244 4.08558 4.14621 4.21081 4.33421 4.38115 4.47134 4.54127 4.58660 4.66589 4.76489 4.78095 4.80034 4.92391 5.01221 5.18104 5.22284 5.30971 5.39456 5.42500 5.43195 5.55816 6.09987 6.20913 6.24247 6.54653 6.81705 7.05420 7.07981 7.28743 8.75533 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014369 B = 0.002376 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.209348 B =11783.583506 C =13096.601404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.130 4.130 3 C 0.109 3.891 4 N -0.595 5.595 5 C 0.107 3.893 6 C 0.121 3.879 7 N -0.700 5.700 8 C 0.534 3.466 9 O -0.570 6.570 10 C -0.126 4.126 11 S -0.156 6.156 12 C -0.544 4.544 13 H 0.085 0.915 14 C 0.012 3.988 15 N -0.912 5.912 16 Si 0.998 3.002 17 H -0.262 1.262 18 H -0.281 1.281 19 H -0.261 1.261 20 C 0.599 3.401 21 O -0.566 6.566 22 C -0.047 4.047 23 C -0.208 4.208 24 C 0.011 3.989 25 N -0.372 5.372 26 H 0.461 0.539 27 N -0.257 5.257 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.049 0.951 38 H 0.047 0.953 39 H 0.419 0.581 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.270 0.730 43 H 0.162 0.838 44 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.343 -20.289 16.043 26.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.169 4.169 3 C -0.013 4.013 4 N -0.326 5.326 5 C -0.016 4.016 6 C -0.004 4.004 7 N -0.354 5.354 8 C 0.320 3.680 9 O -0.449 6.449 10 C -0.277 4.277 11 S 0.071 5.929 12 C -0.692 4.692 13 H 0.103 0.897 14 C -0.192 4.192 15 N -0.549 5.549 16 Si 0.820 3.180 17 H -0.187 1.187 18 H -0.206 1.206 19 H -0.185 1.185 20 C 0.387 3.613 21 O -0.443 6.443 22 C -0.206 4.206 23 C -0.236 4.236 24 C -0.134 4.134 25 N -0.088 5.088 26 H 0.308 0.692 27 N -0.096 5.096 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.114 0.886 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.256 0.744 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.079 0.921 43 H 0.180 0.820 44 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -6.090 -18.478 16.256 25.354 hybrid contribution 1.192 -0.999 -0.810 1.753 sum -4.898 -19.477 15.446 25.336 Atomic orbital electron populations 1.21681 0.93985 1.02545 1.02316 1.21798 0.97076 0.95746 1.02261 1.21782 0.77392 0.98379 1.03753 1.47734 1.07400 1.71525 1.05931 1.21982 0.99205 0.95360 0.85088 1.21501 0.95347 0.98610 0.84957 1.45401 1.57564 1.08791 1.23649 1.20084 0.78431 0.84185 0.85277 1.90706 1.57711 1.28933 1.67545 1.23345 1.03646 1.03347 0.97381 1.85654 1.72789 1.06410 1.27999 1.23171 1.41389 0.96216 1.08420 0.89738 1.26134 0.96642 0.94194 1.02275 1.70187 1.44597 1.00500 1.39611 0.85011 0.78545 0.77815 0.76675 1.18656 1.20635 1.18527 1.17300 0.85047 0.75425 0.83567 1.90753 1.69386 1.52358 1.31796 1.21907 0.94057 1.12421 0.92248 1.21999 0.92016 1.09298 1.00263 1.23522 1.01001 1.04188 0.84664 1.43674 1.06712 1.50039 1.08368 0.69157 1.73636 0.91239 1.19160 1.25528 0.92947 0.91562 0.91696 0.90519 0.93295 0.91010 0.88592 0.86792 0.86853 0.93274 0.93457 0.74378 0.86882 0.87033 0.92067 0.82041 0.75734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.91 71.98 0.71 -0.99 16 2 C -0.13 -1.85 6.26 30.59 0.19 -1.65 16 3 C 0.11 1.86 5.40 86.38 0.47 2.33 16 4 N -0.60 -11.90 2.48 -825.38 -2.05 -13.95 16 5 C 0.11 1.73 5.11 86.38 0.44 2.17 16 6 C 0.12 2.82 5.43 86.38 0.47 3.28 16 7 N -0.70 -16.26 5.56 -463.06 -2.57 -18.83 16 8 C 0.53 18.91 7.85 87.66 0.69 19.60 16 9 O -0.57 -26.41 15.86 -3.04 -0.05 -26.46 16 10 C -0.13 -4.71 6.16 71.24 0.44 -4.27 16 11 S -0.16 -8.46 20.57 -56.49 -1.16 -9.62 16 12 C -0.54 -30.30 9.50 67.95 0.65 -29.66 16 13 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 14 C 0.01 0.68 5.49 84.86 0.47 1.15 16 15 N -0.91 -55.54 13.22 21.65 0.29 -55.25 16 16 Si 1.00 42.64 29.55 68.60 2.03 44.67 16 17 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 18 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 19 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 20 C 0.60 15.27 7.63 86.75 0.66 15.93 16 21 O -0.57 -17.65 16.48 -3.95 -0.07 -17.72 16 22 C -0.05 -1.07 6.49 42.46 0.28 -0.80 16 23 C -0.21 -3.91 10.81 22.41 0.24 -3.67 16 24 C 0.01 0.13 12.02 83.53 1.00 1.13 16 25 N -0.37 -4.93 6.83 -57.51 -0.39 -5.32 16 26 H 0.46 3.34 8.96 -220.00 -1.97 1.37 16 27 N -0.26 -4.89 7.31 -48.17 -0.35 -5.24 16 28 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 1.49 7.35 -2.39 -0.02 1.47 16 34 H 0.10 1.33 8.11 -2.39 -0.02 1.31 16 35 H 0.11 1.77 5.63 -2.39 -0.01 1.76 16 36 H 0.11 1.19 8.03 -2.39 -0.02 1.17 16 37 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.05 1.36 6.59 -2.39 -0.02 1.35 16 39 H 0.42 6.34 8.47 -92.71 -0.79 5.55 16 40 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 41 H 0.11 3.70 8.14 -2.40 -0.02 3.68 16 42 H 0.27 15.34 8.31 -92.71 -0.77 14.56 16 43 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 44 H 0.23 0.60 8.06 -2.91 -0.02 0.58 16 Total: -1.00 -86.05 387.77 0.66 -85.40 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -1.72 Total: 17.77 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 6.70 Total: 4.56 kcal Atomic # 7 Polarization: -93.51 SS G_CDS: -5.08 Total: -98.59 kcal Atomic # 8 Polarization: -44.07 SS G_CDS: -0.11 Total: -44.18 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.16 Total: -9.62 kcal Total: -86.05 0.66 -85.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688459316.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.749 kcal (2) G-P(sol) polarization free energy of solvation -86.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds