Wall clock time and date at job start Sat Apr 11 2020 05:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46807 * 2 1 4 4 H 1.08994 * 109.47265 * 55.00706 * 3 2 1 5 5 C 1.53008 * 109.46691 * 174.99986 * 3 2 1 6 6 N 1.46504 * 109.46903 * 174.99754 * 5 3 2 7 7 C 1.34777 * 119.99707 * 179.97438 * 6 5 3 8 8 O 1.21277 * 119.99941 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.99519 * 180.02562 * 7 6 5 10 10 S 1.81004 * 109.46634 * 180.02562 * 9 7 6 11 11 C 1.76195 * 99.99664 * 180.02562 * 10 9 7 12 12 H 1.07994 * 120.00543 * 359.97438 * 11 10 9 13 13 C 1.38800 * 119.99915 * 179.97438 * 11 10 9 14 14 N 1.31633 * 119.99967 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00063 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46859 * 90.00168 * 15 13 11 17 17 H 1.48500 * 109.47381 * 209.99742 * 15 13 11 18 18 H 1.48492 * 109.47377 * 330.00186 * 15 13 11 19 19 N 1.46496 * 109.47527 * 294.99859 * 3 2 1 20 20 C 1.34772 * 119.99760 * 85.00021 * 19 3 2 21 21 O 1.21576 * 120.00441 * 0.02562 * 20 19 3 22 22 C 1.47716 * 120.00369 * 180.02562 * 20 19 3 23 23 C 1.41500 * 126.52203 * 180.02562 * 22 20 19 24 24 C 1.35362 * 105.50194 * 180.24379 * 23 22 20 25 25 N 1.35036 * 107.23150 * 359.58218 * 24 23 22 26 26 C 1.46493 * 124.88701 * 180.16933 * 25 24 23 27 27 N 1.28475 * 110.22646 * 0.44193 * 25 24 23 28 28 H 1.08994 * 109.46866 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47028 * 299.99898 * 1 2 3 30 30 H 1.08996 * 109.47122 * 59.99439 * 1 2 3 31 31 H 1.08998 * 109.47028 * 240.00102 * 2 1 3 32 32 H 1.08995 * 109.47332 * 120.00050 * 2 1 3 33 33 H 1.08993 * 109.47292 * 295.00035 * 5 3 2 34 34 H 1.09002 * 109.47153 * 55.00433 * 5 3 2 35 35 H 0.96995 * 119.99886 * 0.02562 * 6 5 3 36 36 H 1.08996 * 109.47212 * 299.99512 * 9 7 6 37 37 H 1.08994 * 109.47353 * 60.00451 * 9 7 6 38 38 H 0.96998 * 119.99956 * 179.97438 * 14 13 11 39 39 H 0.97001 * 120.00363 * 265.00797 * 19 3 2 40 40 H 1.08002 * 127.24541 * 359.97398 * 23 22 20 41 41 H 1.08000 * 126.38250 * 179.74343 * 24 23 22 42 42 H 1.09005 * 109.47609 * 270.28309 * 26 25 24 43 43 H 1.08997 * 109.47359 * 30.28473 * 26 25 24 44 44 H 1.09004 * 109.47165 * 150.28746 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4443 0.1257 6 7 4.0631 2.8168 0.0059 7 6 5.3857 3.0630 0.0868 8 8 6.1634 2.1484 0.2583 9 6 5.8981 4.4750 -0.0359 10 16 7.7020 4.4771 0.1127 11 6 8.0213 6.2011 -0.0616 12 1 7.2026 6.8896 -0.2097 13 6 9.3251 6.6742 -0.0086 14 7 10.3229 5.8351 0.1725 15 14 9.6636 8.5019 -0.1941 16 1 9.6382 9.1482 1.1427 17 1 10.9992 8.6977 -0.8131 18 1 8.6228 9.1129 -1.0591 19 7 1.6524 2.0975 -1.2518 20 6 0.4352 2.6644 -1.3669 21 8 -0.3412 2.6326 -0.4318 22 6 0.0441 3.3244 -2.6292 23 6 -1.1909 3.9600 -2.8997 24 6 -1.0954 4.4091 -4.1731 25 7 0.1297 4.0674 -4.6269 26 6 0.6417 4.3701 -5.9656 27 7 0.7794 3.4336 -3.7176 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8499 1.0377 1.0960 34 1 3.9954 0.8312 -0.6660 35 1 3.4410 3.5483 -0.1309 36 1 5.6134 4.8818 -1.0062 37 1 5.4673 5.0879 0.7557 38 1 11.2341 6.1657 0.2092 39 1 2.2719 2.1232 -1.9978 40 1 -2.0339 4.0613 -2.2322 41 1 -1.8561 4.9435 -4.7226 42 1 0.3877 3.5560 -6.6446 43 1 0.1936 5.2963 -6.3252 44 1 1.7251 4.4831 -5.9233 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688722448.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:20 Heat of formation + Delta-G solvation = 2.720348 kcal Electronic energy + Delta-G solvation = -26512.642716 eV Core-core repulsion = 22593.177853 eV Total energy + Delta-G solvation = -3919.464862 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.95980 -40.16113 -38.98990 -36.58545 -33.91284 -33.75484 -32.54858 -32.42421 -31.02279 -30.03719 -28.23952 -27.44724 -25.48313 -23.84717 -23.23878 -21.82914 -21.13340 -20.35055 -20.19693 -18.27663 -17.78556 -16.95368 -16.72476 -16.59513 -16.21940 -15.78362 -15.36568 -15.03996 -14.80103 -14.47070 -14.17322 -13.96745 -13.79419 -13.65454 -13.43415 -13.26442 -13.07705 -13.01130 -12.84991 -12.60424 -12.29874 -11.75735 -11.70360 -11.35940 -11.22145 -11.06156 -11.03235 -11.01809 -10.75797 -10.29798 -9.81428 -9.62281 -9.45205 -9.40565 -9.21222 -9.06779 -8.90580 -8.23044 -6.49234 -6.21341 -3.91618 1.28700 1.80708 2.08328 2.87449 3.05146 3.11251 3.20517 3.22403 3.28141 3.32532 3.72265 3.97405 4.20805 4.40452 4.42072 4.53566 4.60011 4.78977 4.89655 4.90180 4.96199 5.13759 5.15646 5.20671 5.31734 5.33908 5.42716 5.54432 5.59786 5.67382 5.82182 5.82491 5.90671 5.94854 6.03346 6.15818 6.21627 6.29391 6.36715 6.58898 7.20974 7.57930 7.60059 7.69441 8.00115 8.35737 8.60931 9.24018 10.86109 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010313 B = 0.002601 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2714.411357 B =10761.828728 C =12815.043824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.132 4.132 3 C 0.134 3.866 4 H 0.098 0.902 5 C 0.113 3.887 6 N -0.739 5.739 7 C 0.533 3.467 8 O -0.517 6.517 9 C -0.153 4.153 10 S -0.059 6.059 11 C -0.535 4.535 12 H 0.072 0.928 13 C 0.073 3.927 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 N -0.713 5.713 20 C 0.608 3.392 21 O -0.526 6.526 22 C -0.021 4.021 23 C -0.179 4.179 24 C -0.020 4.020 25 N -0.283 5.283 26 C 0.085 3.915 27 N -0.258 5.258 28 H 0.046 0.954 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.399 0.601 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.268 0.732 39 H 0.409 0.591 40 H 0.162 0.838 41 H 0.182 0.818 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.940 -6.035 -10.770 28.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.171 4.171 3 C 0.030 3.970 4 H 0.116 0.884 5 C -0.011 4.011 6 N -0.394 5.394 7 C 0.319 3.681 8 O -0.391 6.391 9 C -0.304 4.304 10 S 0.167 5.833 11 C -0.684 4.684 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.197 1.197 19 N -0.366 5.366 20 C 0.392 3.608 21 O -0.401 6.401 22 C -0.181 4.181 23 C -0.207 4.207 24 C -0.163 4.163 25 N -0.071 5.071 26 C -0.056 4.056 27 N -0.095 5.095 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.233 0.767 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.245 0.755 40 H 0.180 0.820 41 H 0.200 0.800 42 H 0.104 0.896 43 H 0.115 0.885 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -23.894 -7.871 -10.344 27.201 hybrid contribution -1.482 2.888 -0.630 3.306 sum -25.376 -4.983 -10.974 28.093 Atomic orbital electron populations 1.21792 0.94575 1.00693 1.03077 1.21894 0.97228 0.95031 1.02923 1.21389 0.93746 0.94426 0.87467 0.88355 1.21596 0.91362 0.84743 1.03426 1.45986 1.07846 1.08877 1.76670 1.20296 0.81349 0.91103 0.75368 1.90704 1.55437 1.46136 1.46822 1.23530 1.06764 0.95236 1.04878 1.85375 0.92021 1.10880 1.94989 1.22869 0.95436 0.92469 1.57576 0.90966 1.24991 0.95070 0.98932 0.94593 1.70019 0.99484 1.34524 1.46282 0.86169 0.77776 0.83090 0.78472 1.20254 1.20757 1.19731 1.45941 1.16442 1.57138 1.17057 1.16816 0.81659 0.77310 0.84976 1.90814 1.51395 1.59221 1.38636 1.21941 0.94836 1.07175 0.94139 1.21783 0.99142 1.03627 0.96110 1.22890 0.90192 1.06482 0.96704 1.45432 1.10717 1.38828 1.12157 1.22229 1.02723 1.02837 0.77786 1.73539 1.24089 1.13805 0.98068 0.93453 0.92002 0.92554 0.91422 0.90463 0.89842 0.90887 0.76680 0.89301 0.89239 0.92191 0.75541 0.82002 0.80049 0.89609 0.88484 0.88193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.51 37.16 0.32 -1.08 16 2 C -0.13 -1.14 5.61 -26.73 -0.15 -1.29 16 3 C 0.13 1.30 2.41 -67.93 -0.16 1.13 16 4 H 0.10 1.04 7.58 -51.93 -0.39 0.65 16 5 C 0.11 1.28 5.23 -4.04 -0.02 1.26 16 6 N -0.74 -9.97 5.39 -60.29 -0.32 -10.29 16 7 C 0.53 9.95 7.85 -10.98 -0.09 9.87 16 8 O -0.52 -11.64 15.86 5.56 0.09 -11.55 16 9 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16 10 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 11 C -0.54 -15.34 9.50 30.94 0.29 -15.05 16 12 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 13 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 14 N -0.87 -26.25 13.22 55.49 0.73 -25.51 16 15 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 19 N -0.71 -7.10 4.47 -54.79 -0.24 -7.35 16 20 C 0.61 7.04 6.39 -12.39 -0.08 6.97 16 21 O -0.53 -7.18 14.06 5.30 0.07 -7.10 16 22 C -0.02 -0.23 7.13 -82.76 -0.59 -0.82 16 23 C -0.18 -1.64 10.81 -39.37 -0.43 -2.07 16 24 C -0.02 -0.14 11.46 -17.17 -0.20 -0.33 16 25 N -0.28 -2.16 3.70 -68.13 -0.25 -2.41 16 26 C 0.08 0.29 11.31 59.84 0.68 0.96 16 27 N -0.26 -2.67 11.67 33.42 0.39 -2.28 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.65 7.84 -51.93 -0.41 0.25 16 30 H 0.06 0.63 5.64 -51.93 -0.29 0.33 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.40 4.72 8.14 -40.82 -0.33 4.39 16 36 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 37 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 38 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.41 3.96 8.33 -40.82 -0.34 3.62 16 40 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 41 H 0.18 0.51 8.06 -52.49 -0.42 0.09 16 42 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 43 H 0.10 0.09 8.13 -51.93 -0.42 -0.34 16 44 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 388.84 15.07 5.86 5.86 Total: -1.00 -37.44 388.84 -7.59 -45.03 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -6.38 Total: 4.34 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -0.30 Total: -1.36 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: 0.30 Total: -47.85 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: 0.16 Total: -18.66 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.44 -7.59 -45.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688722448.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.753 kcal (2) G-P(sol) polarization free energy of solvation -37.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds