Wall clock time and date at job start Sat Apr 11 2020 05:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46807 * 2 1 4 4 H 1.08994 * 109.47265 * 55.00706 * 3 2 1 5 5 C 1.53008 * 109.46691 * 174.99986 * 3 2 1 6 6 N 1.46504 * 109.46903 * 174.99754 * 5 3 2 7 7 C 1.34777 * 119.99707 * 179.97438 * 6 5 3 8 8 O 1.21277 * 119.99941 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.99519 * 180.02562 * 7 6 5 10 10 S 1.81004 * 109.46634 * 180.02562 * 9 7 6 11 11 C 1.76195 * 99.99664 * 180.02562 * 10 9 7 12 12 H 1.07994 * 120.00543 * 359.97438 * 11 10 9 13 13 C 1.38800 * 119.99915 * 179.97438 * 11 10 9 14 14 N 1.31633 * 119.99967 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00063 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46859 * 90.00168 * 15 13 11 17 17 H 1.48500 * 109.47381 * 209.99742 * 15 13 11 18 18 H 1.48492 * 109.47377 * 330.00186 * 15 13 11 19 19 N 1.46496 * 109.47527 * 294.99859 * 3 2 1 20 20 C 1.34772 * 119.99760 * 85.00021 * 19 3 2 21 21 O 1.21576 * 120.00441 * 0.02562 * 20 19 3 22 22 C 1.47716 * 120.00369 * 180.02562 * 20 19 3 23 23 C 1.41500 * 126.52203 * 180.02562 * 22 20 19 24 24 C 1.35362 * 105.50194 * 180.24379 * 23 22 20 25 25 N 1.35036 * 107.23150 * 359.58218 * 24 23 22 26 26 C 1.46493 * 124.88701 * 180.16933 * 25 24 23 27 27 N 1.28475 * 110.22646 * 0.44193 * 25 24 23 28 28 H 1.08994 * 109.46866 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47028 * 299.99898 * 1 2 3 30 30 H 1.08996 * 109.47122 * 59.99439 * 1 2 3 31 31 H 1.08998 * 109.47028 * 240.00102 * 2 1 3 32 32 H 1.08995 * 109.47332 * 120.00050 * 2 1 3 33 33 H 1.08993 * 109.47292 * 295.00035 * 5 3 2 34 34 H 1.09002 * 109.47153 * 55.00433 * 5 3 2 35 35 H 0.96995 * 119.99886 * 0.02562 * 6 5 3 36 36 H 1.08996 * 109.47212 * 299.99512 * 9 7 6 37 37 H 1.08994 * 109.47353 * 60.00451 * 9 7 6 38 38 H 0.96998 * 119.99956 * 179.97438 * 14 13 11 39 39 H 0.97001 * 120.00363 * 265.00797 * 19 3 2 40 40 H 1.08002 * 127.24541 * 359.97398 * 23 22 20 41 41 H 1.08000 * 126.38250 * 179.74343 * 24 23 22 42 42 H 1.09005 * 109.47609 * 270.28309 * 26 25 24 43 43 H 1.08997 * 109.47359 * 30.28473 * 26 25 24 44 44 H 1.09004 * 109.47165 * 150.28746 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4443 0.1257 6 7 4.0631 2.8168 0.0059 7 6 5.3857 3.0630 0.0868 8 8 6.1634 2.1484 0.2583 9 6 5.8981 4.4750 -0.0359 10 16 7.7020 4.4771 0.1127 11 6 8.0213 6.2011 -0.0616 12 1 7.2026 6.8896 -0.2097 13 6 9.3251 6.6742 -0.0086 14 7 10.3229 5.8351 0.1725 15 14 9.6636 8.5019 -0.1941 16 1 9.6382 9.1482 1.1427 17 1 10.9992 8.6977 -0.8131 18 1 8.6228 9.1129 -1.0591 19 7 1.6524 2.0975 -1.2518 20 6 0.4352 2.6644 -1.3669 21 8 -0.3412 2.6326 -0.4318 22 6 0.0441 3.3244 -2.6292 23 6 -1.1909 3.9600 -2.8997 24 6 -1.0954 4.4091 -4.1731 25 7 0.1297 4.0674 -4.6269 26 6 0.6417 4.3701 -5.9656 27 7 0.7794 3.4336 -3.7176 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8499 1.0377 1.0960 34 1 3.9954 0.8312 -0.6660 35 1 3.4410 3.5483 -0.1309 36 1 5.6134 4.8818 -1.0062 37 1 5.4673 5.0879 0.7557 38 1 11.2341 6.1657 0.2092 39 1 2.2719 2.1232 -1.9978 40 1 -2.0339 4.0613 -2.2322 41 1 -1.8561 4.9435 -4.7226 42 1 0.3877 3.5560 -6.6446 43 1 0.1936 5.2963 -6.3252 44 1 1.7251 4.4831 -5.9233 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688722448.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:19 Heat of formation + Delta-G solvation = -25.415823 kcal Electronic energy + Delta-G solvation = -26513.862791 eV Core-core repulsion = 22593.177853 eV Total energy + Delta-G solvation = -3920.684938 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.56955 -41.14608 -40.33195 -37.59253 -35.00384 -34.58821 -34.48154 -33.28924 -31.67986 -31.41992 -29.22723 -28.15669 -27.63791 -24.69163 -24.06708 -22.41342 -22.03762 -21.53541 -21.10350 -19.87364 -18.84349 -17.86058 -17.74294 -17.47281 -17.24096 -16.90974 -16.87114 -16.45285 -16.25273 -15.76885 -15.23637 -14.85754 -14.72322 -14.61677 -14.48212 -14.31917 -14.21714 -13.85397 -13.55083 -13.44804 -13.35480 -13.17347 -13.01786 -12.88950 -12.64873 -12.50553 -12.19134 -11.91983 -11.80877 -11.72979 -11.19310 -11.14979 -10.99999 -10.29327 -10.27976 -10.18147 -10.12221 -9.95200 -8.67000 -8.35328 -6.13228 0.54787 1.22173 1.25638 1.41818 1.45759 1.56358 1.58521 1.61700 2.09102 2.25700 2.29316 2.39780 2.98717 3.30765 3.38361 3.52795 3.90067 3.97755 4.02734 4.04037 4.11587 4.26589 4.39156 4.40918 4.47524 4.48967 4.53062 4.65763 4.71164 4.75986 4.78131 4.83542 4.93777 5.07085 5.15246 5.33815 5.36903 5.41134 5.43358 5.50180 5.89711 6.19154 6.38664 6.41657 6.90474 7.05962 7.16464 7.18604 8.73902 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010313 B = 0.002601 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2714.411357 B =10761.828728 C =12815.043824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.145 3.855 4 H 0.092 0.908 5 C 0.116 3.884 6 N -0.714 5.714 7 C 0.537 3.463 8 O -0.560 6.560 9 C -0.132 4.132 10 S -0.145 6.145 11 C -0.548 4.548 12 H 0.081 0.919 13 C 0.014 3.986 14 N -0.910 5.910 15 Si 0.998 3.002 16 H -0.268 1.268 17 H -0.276 1.276 18 H -0.259 1.259 19 N -0.707 5.707 20 C 0.607 3.393 21 O -0.554 6.554 22 C -0.049 4.049 23 C -0.205 4.205 24 C -0.002 4.002 25 N -0.282 5.282 26 C 0.075 3.925 27 N -0.281 5.281 28 H 0.059 0.941 29 H 0.049 0.951 30 H 0.039 0.961 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.410 0.590 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.272 0.728 39 H 0.411 0.589 40 H 0.164 0.836 41 H 0.225 0.775 42 H 0.101 0.899 43 H 0.128 0.872 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.740 -4.619 -12.269 30.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.040 3.960 4 H 0.110 0.890 5 C -0.008 4.008 6 N -0.368 5.368 7 C 0.323 3.677 8 O -0.437 6.437 9 C -0.283 4.283 10 S 0.083 5.917 11 C -0.696 4.696 12 H 0.099 0.901 13 C -0.191 4.191 14 N -0.547 5.547 15 Si 0.820 3.180 16 H -0.194 1.194 17 H -0.202 1.202 18 H -0.183 1.183 19 N -0.359 5.359 20 C 0.393 3.607 21 O -0.430 6.430 22 C -0.207 4.207 23 C -0.233 4.233 24 C -0.145 4.145 25 N -0.071 5.071 26 C -0.064 4.064 27 N -0.119 5.119 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.093 0.907 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.246 0.754 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.081 0.919 39 H 0.247 0.753 40 H 0.181 0.819 41 H 0.241 0.759 42 H 0.119 0.881 43 H 0.146 0.854 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -25.732 -6.461 -11.862 29.062 hybrid contribution -1.061 2.401 -0.247 2.636 sum -26.793 -4.060 -12.109 29.682 Atomic orbital electron populations 1.21712 0.95185 1.01013 1.01650 1.21880 0.96482 0.94244 1.04042 1.21293 0.92293 0.95205 0.87199 0.88999 1.21727 0.92232 0.83094 1.03733 1.45738 1.06120 1.10476 1.74457 1.19968 0.82594 0.89786 0.75364 1.90696 1.56868 1.46893 1.49286 1.23376 1.01288 0.97161 1.06451 1.85515 0.99009 1.11835 1.95379 1.23199 0.96157 0.92573 1.57656 0.90122 1.26119 0.94685 1.04457 0.93815 1.70177 1.00047 1.37127 1.47337 0.84959 0.77969 0.76198 0.78885 1.19364 1.20152 1.18261 1.45895 1.16133 1.56771 1.17087 1.16983 0.81597 0.77028 0.85096 1.90789 1.52149 1.60428 1.39657 1.21975 0.95987 1.08510 0.94263 1.22016 0.98930 1.04748 0.97625 1.23484 0.90329 1.04812 0.95874 1.45891 1.10910 1.37486 1.12776 1.22604 1.02702 1.04991 0.76085 1.73482 1.24877 1.14970 0.98524 0.92200 0.93171 0.94220 0.90685 0.88960 0.89570 0.90583 0.75352 0.87501 0.87606 0.91943 0.75270 0.81879 0.75886 0.88058 0.85386 0.88769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 8.51 71.98 0.61 -1.98 16 2 C -0.13 -2.05 5.61 30.60 0.17 -1.88 16 3 C 0.14 2.66 2.41 44.99 0.11 2.77 16 4 H 0.09 1.88 7.58 -2.39 -0.02 1.86 16 5 C 0.12 2.48 5.23 86.38 0.45 2.94 16 6 N -0.71 -18.44 5.39 -463.04 -2.49 -20.93 16 7 C 0.54 19.81 7.85 87.66 0.69 20.50 16 8 O -0.56 -25.46 15.86 -3.02 -0.05 -25.51 16 9 C -0.13 -5.31 6.16 71.24 0.44 -4.87 16 10 S -0.14 -8.05 20.57 -56.49 -1.16 -9.22 16 11 C -0.55 -31.50 9.50 67.95 0.65 -30.85 16 12 H 0.08 4.33 7.80 -2.91 -0.02 4.30 16 13 C 0.01 0.80 5.49 84.86 0.47 1.27 16 14 N -0.91 -55.98 13.22 21.65 0.29 -55.69 16 15 Si 1.00 43.68 29.55 68.60 2.03 45.70 16 16 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 17 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 18 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 19 N -0.71 -13.73 4.47 -445.53 -1.99 -15.72 16 20 C 0.61 14.12 6.39 86.75 0.55 14.68 16 21 O -0.55 -15.36 14.06 -3.96 -0.06 -15.41 16 22 C -0.05 -1.06 7.13 42.46 0.30 -0.76 16 23 C -0.21 -3.62 10.81 22.41 0.24 -3.37 16 24 C 0.00 -0.02 11.46 83.54 0.96 0.93 16 25 N -0.28 -3.74 3.70 -369.46 -1.37 -5.10 16 26 C 0.07 0.31 11.31 127.77 1.44 1.76 16 27 N -0.28 -5.57 11.67 -48.17 -0.56 -6.13 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.05 1.05 7.84 -2.39 -0.02 1.03 16 30 H 0.04 0.88 5.64 -2.39 -0.01 0.87 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.41 9.06 8.14 -92.71 -0.75 8.31 16 36 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 37 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 38 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 39 H 0.41 7.70 8.33 -92.71 -0.77 6.93 16 40 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 41 H 0.22 0.33 8.06 -2.91 -0.02 0.31 16 42 H 0.10 0.14 8.14 -2.38 -0.02 0.12 16 43 H 0.13 -0.26 8.13 -2.39 -0.02 -0.28 16 44 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 Total: -1.00 -83.77 388.84 1.23 -82.55 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: -0.49 Total: 24.33 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: 7.08 Total: 1.13 kcal Atomic # 7 Polarization: -97.45 SS G_CDS: -6.13 Total: -103.57 kcal Atomic # 8 Polarization: -40.82 SS G_CDS: -0.10 Total: -40.92 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: -8.05 SS G_CDS: -1.16 Total: -9.22 kcal Total: -83.77 1.23 -82.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688722448.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.131 kcal (2) G-P(sol) polarization free energy of solvation -83.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds