Wall clock time and date at job start Sat Apr 11 2020 05:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 H 1.09004 * 109.46812 * 304.99956 * 3 2 1 5 5 C 1.52999 * 109.47114 * 184.99769 * 3 2 1 6 6 N 1.46500 * 109.47226 * 184.99495 * 5 3 2 7 7 C 1.34776 * 119.99923 * 180.02562 * 6 5 3 8 8 O 1.21272 * 120.00513 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.99846 * 180.02562 * 7 6 5 10 10 S 1.80997 * 109.47088 * 180.02562 * 9 7 6 11 11 C 1.76203 * 99.99721 * 180.02562 * 10 9 7 12 12 H 1.07993 * 120.00610 * 359.97438 * 11 10 9 13 13 C 1.38804 * 119.99651 * 180.02562 * 11 10 9 14 14 N 1.31631 * 120.00083 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00032 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46857 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47369 * 119.99293 * 15 13 11 18 18 H 1.48498 * 109.47328 * 239.99837 * 15 13 11 19 19 N 1.46498 * 109.47036 * 65.00021 * 3 2 1 20 20 C 1.34777 * 119.99828 * 274.72131 * 19 3 2 21 21 O 1.21573 * 119.99937 * 0.28077 * 20 19 3 22 22 C 1.47712 * 120.00297 * 180.27851 * 20 19 3 23 23 C 1.41495 * 126.52219 * 179.71498 * 22 20 19 24 24 C 1.35364 * 105.50420 * 179.90162 * 23 22 20 25 25 N 1.35035 * 107.22797 * 0.35739 * 24 23 22 26 26 C 1.46496 * 124.88329 * 179.76833 * 25 24 23 27 27 N 1.28469 * 110.22969 * 359.76342 * 25 24 23 28 28 H 1.09000 * 109.46616 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47004 * 300.00349 * 1 2 3 30 30 H 1.08997 * 109.46461 * 60.00164 * 1 2 3 31 31 H 1.09000 * 109.47004 * 239.99651 * 2 1 3 32 32 H 1.09005 * 109.47038 * 120.00011 * 2 1 3 33 33 H 1.08995 * 109.47415 * 304.99804 * 5 3 2 34 34 H 1.09008 * 109.47087 * 65.00143 * 5 3 2 35 35 H 0.96998 * 120.00120 * 0.02562 * 6 5 3 36 36 H 1.08997 * 109.47068 * 300.00700 * 9 7 6 37 37 H 1.09008 * 109.46877 * 60.00083 * 9 7 6 38 38 H 0.97001 * 119.99726 * 180.02562 * 14 13 11 39 39 H 0.97001 * 120.00384 * 95.00578 * 19 3 2 40 40 H 1.08002 * 127.24757 * 0.02562 * 23 22 20 41 41 H 1.08004 * 126.38418 * 180.08678 * 24 23 22 42 42 H 1.09005 * 109.46983 * 269.97229 * 26 25 24 43 43 H 1.09002 * 109.47562 * 29.96966 * 26 25 24 44 44 H 1.08994 * 109.47399 * 149.97316 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5649 1.4442 -0.1257 6 7 4.0632 2.8167 -0.0060 7 6 5.3858 3.0629 -0.0869 8 8 6.1634 2.1484 -0.2592 9 6 5.8984 4.4747 0.0368 10 16 7.7021 4.4769 -0.1135 11 6 8.0216 6.2007 0.0638 12 1 7.2031 6.8891 0.2132 13 6 9.3254 6.6738 0.0104 14 7 10.3231 5.8348 -0.1722 15 14 9.6644 8.5011 0.1991 16 1 8.3822 9.2250 0.3923 17 1 10.5409 8.7229 1.3771 18 1 10.3393 9.0082 -1.0226 19 7 1.6525 2.0974 1.2518 20 6 0.4374 2.6692 1.3650 21 8 -0.3391 2.6371 0.4300 22 6 0.0488 3.3350 2.6250 23 6 -1.1817 3.9806 2.8916 24 6 -1.0841 4.4346 4.1631 25 7 0.1376 4.0850 4.6199 26 6 0.6510 4.3908 5.9575 27 7 0.7848 3.4457 3.7129 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.9955 0.8311 0.6660 34 1 3.8500 1.0376 -1.0960 35 1 3.4412 3.5482 0.1314 36 1 5.4674 5.0883 -0.7543 37 1 5.6137 4.8808 1.0075 38 1 11.2343 6.1655 -0.2091 39 1 2.2720 2.1232 1.9978 40 1 -2.0227 4.0868 2.2223 41 1 -1.8405 4.9792 4.7088 42 1 1.1633 5.3528 5.9389 43 1 -0.1781 4.4344 6.6638 44 1 1.3497 3.6129 6.2651 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688722449.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:22 Heat of formation + Delta-G solvation = -25.521584 kcal Electronic energy + Delta-G solvation = -26515.997238 eV Core-core repulsion = 22595.307713 eV Total energy + Delta-G solvation = -3920.689525 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.57055 -41.14614 -40.33275 -37.59421 -35.00500 -34.58998 -34.48174 -33.28865 -31.68003 -31.42058 -29.22753 -28.15732 -27.64070 -24.69198 -24.06622 -22.41386 -22.03773 -21.53562 -21.10405 -19.87567 -18.84384 -17.86246 -17.74367 -17.47377 -17.23780 -16.91434 -16.87348 -16.45336 -16.25075 -15.76943 -15.24048 -14.85920 -14.72233 -14.61587 -14.48283 -14.30919 -14.22962 -13.85749 -13.55524 -13.44727 -13.34895 -13.16917 -13.01894 -12.91044 -12.64125 -12.50219 -12.18933 -11.92144 -11.80688 -11.71491 -11.19335 -11.16524 -11.00117 -10.29121 -10.28039 -10.18247 -10.12297 -9.95292 -8.67068 -8.35643 -6.13402 0.54772 1.22153 1.25643 1.40629 1.45669 1.57122 1.58426 1.61707 2.09041 2.25407 2.29239 2.39686 2.98492 3.30604 3.38392 3.52800 3.90011 3.97773 4.02691 4.04041 4.11618 4.26363 4.39221 4.40686 4.47688 4.48777 4.53124 4.65702 4.71167 4.75950 4.78140 4.83545 4.93854 5.07117 5.15357 5.33796 5.36857 5.41320 5.43419 5.50186 5.89691 6.19244 6.38582 6.41508 6.90477 7.05826 7.16433 7.18462 8.73815 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010292 B = 0.002606 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2719.887251 B =10740.051632 C =12800.489183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.145 3.855 4 H 0.092 0.908 5 C 0.116 3.884 6 N -0.714 5.714 7 C 0.537 3.463 8 O -0.559 6.559 9 C -0.132 4.132 10 S -0.145 6.145 11 C -0.547 4.547 12 H 0.080 0.920 13 C 0.014 3.986 14 N -0.910 5.910 15 Si 0.999 3.001 16 H -0.258 1.258 17 H -0.272 1.272 18 H -0.274 1.274 19 N -0.707 5.707 20 C 0.607 3.393 21 O -0.554 6.554 22 C -0.049 4.049 23 C -0.205 4.205 24 C -0.002 4.002 25 N -0.282 5.282 26 C 0.075 3.925 27 N -0.281 5.281 28 H 0.059 0.941 29 H 0.039 0.961 30 H 0.049 0.951 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.410 0.590 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.272 0.728 39 H 0.411 0.589 40 H 0.164 0.836 41 H 0.225 0.775 42 H 0.096 0.904 43 H 0.130 0.870 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.761 -4.688 12.299 30.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.040 3.960 4 H 0.110 0.890 5 C -0.008 4.008 6 N -0.368 5.368 7 C 0.323 3.677 8 O -0.437 6.437 9 C -0.283 4.283 10 S 0.083 5.917 11 C -0.695 4.695 12 H 0.099 0.901 13 C -0.191 4.191 14 N -0.547 5.547 15 Si 0.820 3.180 16 H -0.182 1.182 17 H -0.198 1.198 18 H -0.199 1.199 19 N -0.359 5.359 20 C 0.393 3.607 21 O -0.430 6.430 22 C -0.207 4.207 23 C -0.233 4.233 24 C -0.145 4.145 25 N -0.071 5.071 26 C -0.064 4.064 27 N -0.119 5.119 28 H 0.078 0.922 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.110 0.890 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.246 0.754 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.081 0.919 39 H 0.247 0.753 40 H 0.181 0.819 41 H 0.241 0.759 42 H 0.114 0.886 43 H 0.149 0.851 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -25.761 -6.535 11.888 29.115 hybrid contribution -1.036 2.439 0.243 2.661 sum -26.797 -4.096 12.130 29.698 Atomic orbital electron populations 1.21711 0.95184 1.01017 1.01640 1.21880 0.96483 0.94229 1.04043 1.21293 0.92285 0.95223 0.87193 0.89009 1.21728 0.92241 0.83087 1.03739 1.45739 1.06122 1.10482 1.74456 1.19964 0.82593 0.89780 0.75369 1.90694 1.56860 1.46901 1.49273 1.23378 1.01295 0.97168 1.06443 1.85516 0.99014 1.11902 1.95316 1.23229 0.96153 0.92574 1.57527 0.90141 1.26120 0.94699 1.04454 0.93828 1.70184 1.00048 1.37071 1.47373 0.84907 0.78712 0.76186 0.78145 1.18199 1.19768 1.19910 1.45897 1.16279 1.56618 1.17094 1.16984 0.81601 0.77043 0.85079 1.90788 1.52062 1.60571 1.39606 1.21972 0.95987 1.08413 0.94362 1.22015 0.99045 1.04557 0.97705 1.23487 0.90461 1.04629 0.95924 1.45889 1.11085 1.37204 1.12875 1.22605 1.03326 1.04082 0.76369 1.73479 1.24735 1.14980 0.98658 0.92189 0.94229 0.93174 0.88963 0.90673 0.90573 0.89568 0.75363 0.87629 0.87501 0.91945 0.75271 0.81881 0.75880 0.88582 0.85132 0.88499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 8.52 71.98 0.61 -1.98 16 2 C -0.13 -2.04 5.61 30.60 0.17 -1.87 16 3 C 0.14 2.66 2.41 44.99 0.11 2.77 16 4 H 0.09 1.88 7.57 -2.39 -0.02 1.86 16 5 C 0.12 2.48 5.23 86.38 0.45 2.93 16 6 N -0.71 -18.46 5.39 -463.07 -2.49 -20.96 16 7 C 0.54 19.83 7.85 87.66 0.69 20.52 16 8 O -0.56 -25.46 15.86 -3.00 -0.05 -25.51 16 9 C -0.13 -5.31 6.16 71.24 0.44 -4.88 16 10 S -0.14 -8.06 20.57 -56.49 -1.16 -9.22 16 11 C -0.55 -31.45 9.50 67.96 0.65 -30.81 16 12 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 13 C 0.01 0.79 5.49 84.86 0.47 1.25 16 14 N -0.91 -55.94 13.22 21.65 0.29 -55.65 16 15 Si 1.00 43.73 29.55 68.60 2.03 45.75 16 16 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 17 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 18 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 19 N -0.71 -13.73 4.46 -445.53 -1.99 -15.72 16 20 C 0.61 14.13 6.40 86.75 0.56 14.68 16 21 O -0.55 -15.37 14.07 -3.95 -0.06 -15.42 16 22 C -0.05 -1.06 7.13 42.46 0.30 -0.76 16 23 C -0.21 -3.62 10.81 22.41 0.24 -3.38 16 24 C 0.00 -0.02 11.46 83.54 0.96 0.93 16 25 N -0.28 -3.74 3.70 -369.46 -1.37 -5.10 16 26 C 0.07 0.31 11.31 127.77 1.44 1.76 16 27 N -0.28 -5.57 11.67 -48.18 -0.56 -6.13 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.04 0.88 5.66 -2.39 -0.01 0.86 16 30 H 0.05 1.05 7.85 -2.39 -0.02 1.03 16 31 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 35 H 0.41 9.08 8.14 -92.71 -0.75 8.33 16 36 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 37 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 38 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 39 H 0.41 7.70 8.33 -92.71 -0.77 6.93 16 40 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 41 H 0.22 0.33 8.06 -2.91 -0.02 0.31 16 42 H 0.10 0.29 8.14 -2.38 -0.02 0.27 16 43 H 0.13 -0.35 8.13 -2.39 -0.02 -0.37 16 44 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 Total: -1.00 -83.82 388.88 1.23 -82.59 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: -0.49 Total: 24.20 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: 7.09 Total: 1.18 kcal Atomic # 7 Polarization: -97.43 SS G_CDS: -6.13 Total: -103.56 kcal Atomic # 8 Polarization: -40.83 SS G_CDS: -0.10 Total: -40.94 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: -8.06 SS G_CDS: -1.16 Total: -9.22 kcal Total: -83.82 1.23 -82.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688722449.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.064 kcal (2) G-P(sol) polarization free energy of solvation -83.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds