Wall clock time and date at job start Sat Apr 11 2020 05:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.46990 * 2 1 4 4 H 1.09000 * 109.46813 * 54.99511 * 3 2 1 5 5 C 1.52997 * 109.47596 * 175.00218 * 3 2 1 6 6 N 1.46498 * 109.47325 * 175.00050 * 5 3 2 7 7 C 1.34776 * 119.99560 * 180.02562 * 6 5 3 8 8 O 1.21274 * 120.00578 * 359.72063 * 7 6 5 9 9 C 1.50701 * 119.99713 * 179.72629 * 7 6 5 10 10 S 1.80995 * 109.47340 * 179.97438 * 9 7 6 11 11 C 1.76201 * 100.00319 * 180.02562 * 10 9 7 12 12 H 1.08007 * 119.99682 * 359.97438 * 11 10 9 13 13 C 1.38796 * 120.00289 * 179.97438 * 11 10 9 14 14 N 1.31632 * 119.99793 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00131 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47324 * 60.00208 * 15 13 11 17 17 H 1.48501 * 109.47286 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47171 * 299.99777 * 15 13 11 19 19 N 1.46507 * 109.46870 * 295.00291 * 3 2 1 20 20 C 1.34773 * 119.99975 * 84.99728 * 19 3 2 21 21 O 1.21626 * 120.00274 * 355.69933 * 20 19 3 22 22 C 1.47167 * 119.99995 * 175.69167 * 20 19 3 23 23 C 1.38407 * 126.88103 * 4.99633 * 22 20 19 24 24 C 1.39673 * 105.35766 * 179.91438 * 23 22 20 25 25 N 1.30857 * 107.86385 * 0.35325 * 24 23 22 26 26 N 1.28445 * 110.92439 * 359.77186 * 25 24 23 27 27 C 1.46506 * 125.19118 * 180.02562 * 26 25 24 28 28 H 1.09001 * 109.47377 * 299.99850 * 1 2 3 29 29 H 1.09003 * 109.47657 * 60.00830 * 1 2 3 30 30 H 1.09003 * 109.47007 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47377 * 240.00150 * 2 1 3 32 32 H 1.09001 * 109.47811 * 119.99939 * 2 1 3 33 33 H 1.09004 * 109.46925 * 54.99420 * 5 3 2 34 34 H 1.08995 * 109.46786 * 295.00268 * 5 3 2 35 35 H 0.96993 * 119.99847 * 359.72311 * 6 5 3 36 36 H 1.09005 * 109.47167 * 300.00009 * 9 7 6 37 37 H 1.08997 * 109.47339 * 59.99404 * 9 7 6 38 38 H 0.97005 * 120.00199 * 180.02562 * 14 13 11 39 39 H 0.97007 * 119.99550 * 264.99646 * 19 3 2 40 40 H 1.08006 * 127.32277 * 0.03673 * 23 22 20 41 41 H 1.08006 * 126.06590 * 180.09633 * 24 23 22 42 42 H 1.09000 * 109.47140 * 274.80656 * 27 26 25 43 43 H 1.09003 * 109.46897 * 34.80312 * 27 26 25 44 44 H 1.09001 * 109.47072 * 154.80554 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8418 5 6 3.5647 1.4445 0.1257 6 7 4.0628 2.8170 0.0059 7 6 5.3855 3.0632 0.0857 8 8 6.1629 2.1492 0.2618 9 6 5.8985 4.4743 -0.0436 10 16 7.7022 4.4768 0.1066 11 6 8.0221 6.1998 -0.0762 12 1 7.2036 6.8878 -0.2285 13 6 9.3259 6.6729 -0.0243 14 7 10.3235 5.8343 0.1609 15 14 9.6651 8.4995 -0.2188 16 1 8.9683 9.2497 0.8568 17 1 11.1269 8.7442 -0.1264 18 1 9.1700 8.9569 -1.5420 19 7 1.6522 2.0975 -1.2519 20 6 0.4349 2.6643 -1.3670 21 8 -0.3705 2.5646 -0.4611 22 6 0.0802 3.4041 -2.5887 23 6 0.8427 3.5249 -3.7375 24 6 0.0831 4.3138 -4.6044 25 7 -1.0296 4.6272 -3.9910 26 7 -1.0649 4.1139 -2.8142 27 6 -2.1656 4.2660 -1.8594 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.9953 0.8313 -0.6660 34 1 3.8498 1.0379 1.0959 35 1 3.4411 3.5480 -0.1352 36 1 5.6139 4.8766 -1.0159 37 1 5.4677 5.0912 0.7449 38 1 11.2347 6.1650 0.1975 39 1 2.2718 2.1232 -1.9979 40 1 1.8171 3.0982 -3.9246 41 1 0.3658 4.6153 -5.6022 42 1 -2.0357 5.1923 -1.2997 43 1 -3.1125 4.2969 -2.3984 44 1 -2.1675 3.4219 -1.1696 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688723192.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:25 Heat of formation + Delta-G solvation = -23.812381 kcal Electronic energy + Delta-G solvation = -26750.167185 eV Core-core repulsion = 22829.551777 eV Total energy + Delta-G solvation = -3920.615408 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.51344 -41.16416 -40.33480 -37.63269 -35.06415 -34.57154 -34.35514 -33.66662 -31.68829 -31.30506 -28.97940 -28.01188 -27.62807 -24.84423 -24.17050 -22.76753 -21.86299 -21.49778 -21.14465 -19.86781 -19.05663 -17.84794 -17.70899 -17.33136 -17.24285 -16.86704 -16.70117 -16.39633 -16.19602 -15.77195 -15.56004 -14.84472 -14.71839 -14.57723 -14.51284 -14.43555 -14.16153 -14.05787 -13.71176 -13.46697 -13.24479 -13.15798 -13.01331 -12.85685 -12.65320 -12.53723 -12.17112 -11.83230 -11.77035 -11.72874 -11.12117 -11.10323 -10.96854 -10.34309 -10.26578 -10.15112 -10.09097 -9.99397 -8.64532 -8.33719 -6.11090 0.20754 1.27693 1.37308 1.44180 1.47553 1.57135 1.62661 1.63222 2.10086 2.15062 2.27056 2.31519 3.00450 3.32899 3.47793 3.58247 3.63012 3.91957 4.04072 4.11872 4.14299 4.29072 4.30692 4.38776 4.41648 4.53121 4.53892 4.61160 4.64827 4.72375 4.81250 4.84923 4.95375 5.08834 5.16442 5.36048 5.42091 5.42813 5.49544 5.54878 5.71996 6.20513 6.32921 6.44819 6.97925 7.07774 7.07911 7.22651 8.75066 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011663 B = 0.002541 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.144633 B =11017.513037 C =12833.238565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.129 4.129 3 C 0.151 3.849 4 H 0.093 0.907 5 C 0.115 3.885 6 N -0.713 5.713 7 C 0.538 3.462 8 O -0.560 6.560 9 C -0.132 4.132 10 S -0.146 6.146 11 C -0.548 4.548 12 H 0.081 0.919 13 C 0.015 3.985 14 N -0.910 5.910 15 Si 0.995 3.005 16 H -0.264 1.264 17 H -0.279 1.279 18 H -0.262 1.262 19 N -0.699 5.699 20 C 0.598 3.402 21 O -0.552 6.552 22 C -0.058 4.058 23 C -0.182 4.182 24 C -0.010 4.010 25 N -0.305 5.305 26 N -0.268 5.268 27 C 0.077 3.923 28 H 0.049 0.951 29 H 0.043 0.957 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.412 0.588 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.271 0.729 39 H 0.415 0.585 40 H 0.187 0.813 41 H 0.211 0.789 42 H 0.090 0.910 43 H 0.104 0.896 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.126 -7.575 -5.991 27.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.168 4.168 3 C 0.046 3.954 4 H 0.111 0.889 5 C -0.009 4.009 6 N -0.368 5.368 7 C 0.324 3.676 8 O -0.437 6.437 9 C -0.284 4.284 10 S 0.081 5.919 11 C -0.696 4.696 12 H 0.099 0.901 13 C -0.190 4.190 14 N -0.547 5.547 15 Si 0.817 3.183 16 H -0.188 1.188 17 H -0.204 1.204 18 H -0.186 1.186 19 N -0.352 5.352 20 C 0.384 3.616 21 O -0.430 6.430 22 C -0.187 4.187 23 C -0.211 4.211 24 C -0.185 4.185 25 N -0.138 5.138 26 N -0.056 5.056 27 C -0.062 4.062 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.248 0.752 36 H 0.129 0.871 37 H 0.123 0.877 38 H 0.080 0.920 39 H 0.252 0.748 40 H 0.204 0.796 41 H 0.228 0.772 42 H 0.108 0.892 43 H 0.123 0.877 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -26.365 -8.598 -5.023 28.182 hybrid contribution 0.331 1.940 -0.562 2.047 sum -26.033 -6.657 -5.585 27.445 Atomic orbital electron populations 1.21737 0.95193 1.00767 1.01830 1.21890 0.96431 0.94295 1.04143 1.21277 0.92256 0.95093 0.86775 0.88886 1.21739 0.92110 0.83151 1.03910 1.45707 1.06017 1.10495 1.74540 1.19937 0.82684 0.89648 0.75371 1.90706 1.56967 1.46931 1.49141 1.23387 1.01080 0.97296 1.06607 1.85522 0.99319 1.11767 1.95281 1.23172 0.96108 0.92768 1.57506 0.90066 1.26085 0.94767 1.04274 0.93885 1.70168 1.00038 1.37148 1.47329 0.85045 0.77352 0.76441 0.79432 1.18836 1.20415 1.18640 1.45676 1.15547 1.56567 1.17420 1.16819 0.82408 0.77955 0.84447 1.90785 1.49516 1.61392 1.41343 1.21564 0.91987 1.06284 0.98853 1.22678 1.02397 1.03843 0.92145 1.24146 0.90872 1.01015 1.02454 1.73219 1.25044 1.20697 0.94831 1.45871 1.14870 1.33877 1.10974 1.22537 0.87064 1.05720 0.90922 0.93186 0.93792 0.92748 0.90356 0.89280 0.90147 0.89806 0.75188 0.87142 0.87718 0.91989 0.74779 0.79613 0.77213 0.89195 0.87705 0.87045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 8.46 71.98 0.61 -1.40 16 2 C -0.13 -1.49 5.61 30.59 0.17 -1.32 16 3 C 0.15 1.94 2.41 44.99 0.11 2.05 16 4 H 0.09 1.40 7.64 -2.39 -0.02 1.38 16 5 C 0.11 1.91 5.23 86.38 0.45 2.36 16 6 N -0.71 -15.07 5.39 -463.08 -2.50 -17.56 16 7 C 0.54 17.93 7.85 87.66 0.69 18.62 16 8 O -0.56 -23.78 15.86 -3.01 -0.05 -23.83 16 9 C -0.13 -4.96 6.16 71.24 0.44 -4.52 16 10 S -0.15 -7.87 20.57 -56.49 -1.16 -9.03 16 11 C -0.55 -30.74 9.50 67.95 0.65 -30.09 16 12 H 0.08 4.23 7.80 -2.91 -0.02 4.21 16 13 C 0.01 0.83 5.49 84.86 0.47 1.30 16 14 N -0.91 -55.22 13.22 21.65 0.29 -54.93 16 15 Si 1.00 43.05 29.55 68.60 2.03 45.08 16 16 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 17 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 18 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 19 N -0.70 -8.52 4.46 -446.04 -1.99 -10.50 16 20 C 0.60 9.85 6.52 86.59 0.56 10.42 16 21 O -0.55 -11.20 11.39 -4.11 -0.05 -11.25 16 22 C -0.06 -1.00 6.96 40.79 0.28 -0.72 16 23 C -0.18 -2.55 10.50 22.66 0.24 -2.32 16 24 C -0.01 -0.16 12.03 85.18 1.02 0.87 16 25 N -0.30 -6.10 11.90 -57.14 -0.68 -6.78 16 26 N -0.27 -5.01 3.75 -356.00 -1.33 -6.34 16 27 C 0.08 1.06 11.01 127.77 1.41 2.46 16 28 H 0.05 0.84 7.80 -2.39 -0.02 0.82 16 29 H 0.04 0.76 5.55 -2.39 -0.01 0.75 16 30 H 0.05 0.70 8.14 -2.39 -0.02 0.69 16 31 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.41 6.88 8.13 -92.71 -0.75 6.13 16 36 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 37 H 0.10 3.61 8.14 -2.40 -0.02 3.59 16 38 H 0.27 15.31 8.31 -92.70 -0.77 14.54 16 39 H 0.41 3.84 7.63 -92.70 -0.71 3.14 16 40 H 0.19 1.49 7.58 -2.91 -0.02 1.47 16 41 H 0.21 1.99 8.06 -2.91 -0.02 1.97 16 42 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.11 1.63 5.96 -2.39 -0.01 1.61 16 Total: -1.00 -79.37 382.89 1.24 -78.13 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -0.42 Total: 19.31 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: 7.10 Total: -2.30 kcal Atomic # 7 Polarization: -89.91 SS G_CDS: -6.21 Total: -96.12 kcal Atomic # 8 Polarization: -34.99 SS G_CDS: -0.09 Total: -35.08 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: -7.87 SS G_CDS: -1.16 Total: -9.03 kcal Total: -79.37 1.24 -78.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688723192.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.319 kcal (2) G-P(sol) polarization free energy of solvation -79.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds