Wall clock time and date at job start Sat Apr 11 2020 05:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46790 * 2 1 4 4 S 1.81405 * 109.46881 * 179.97438 * 3 2 1 5 5 C 1.81391 * 103.00111 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.47272 * 180.02562 * 5 4 3 7 7 O 1.21280 * 119.99937 * 359.97438 * 6 5 4 8 8 N 1.34783 * 120.00199 * 180.02562 * 6 5 4 9 9 C 1.46490 * 119.99973 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.47167 * 179.97438 * 9 8 6 11 11 N 1.31789 * 119.09648 * 269.98067 * 10 9 8 12 12 C 1.32799 * 120.71637 * 179.97438 * 11 10 9 13 13 O 1.35519 * 120.50861 * 179.97438 * 12 11 10 14 14 C 1.39416 * 118.97466 * 359.74609 * 12 11 10 15 15 C 1.38181 * 118.35119 * 0.51526 * 14 12 11 16 16 C 1.50697 * 120.41367 * 179.76229 * 15 14 12 17 17 N 1.46499 * 109.47276 * 94.71971 * 16 15 14 18 18 C 1.36935 * 119.99938 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00518 * 359.72965 * 18 17 16 20 20 C 1.38817 * 119.99990 * 179.97438 * 18 17 16 21 21 N 1.31617 * 119.99869 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99909 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47028 * 60.00888 * 22 20 18 24 24 H 1.48503 * 109.46851 * 180.02562 * 22 20 18 25 25 H 1.48492 * 109.47412 * 300.00497 * 22 20 18 26 26 N 1.31763 * 119.09108 * 90.00041 * 10 9 8 27 27 H 1.08997 * 109.47566 * 59.99961 * 1 2 3 28 28 H 1.08999 * 109.47263 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47241 * 300.00363 * 1 2 3 30 30 H 1.08998 * 109.46736 * 239.99705 * 2 1 3 31 31 H 1.08997 * 109.46968 * 119.99570 * 2 1 3 32 32 H 1.09000 * 109.47041 * 60.00027 * 3 2 1 33 33 H 1.08997 * 109.47014 * 299.99542 * 3 2 1 34 34 H 1.09003 * 109.47259 * 59.99673 * 5 4 3 35 35 H 1.09006 * 109.47147 * 300.00053 * 5 4 3 36 36 H 0.96998 * 119.99587 * 359.97438 * 8 6 5 37 37 H 1.09004 * 109.47512 * 60.00127 * 9 8 6 38 38 H 1.08994 * 109.47511 * 300.00073 * 9 8 6 39 39 H 0.96702 * 114.00026 * 90.00217 * 13 12 11 40 40 H 1.08004 * 120.81960 * 180.27450 * 14 12 11 41 41 H 1.09004 * 109.47205 * 334.71946 * 16 15 14 42 42 H 1.09005 * 109.47240 * 214.72155 * 16 15 14 43 43 H 0.96999 * 119.99984 * 0.02562 * 17 16 15 44 44 H 0.96996 * 119.99743 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 16 3.8540 1.4426 0.0008 5 6 4.2620 3.2100 -0.0001 6 6 5.7594 3.3799 -0.0002 7 8 6.4803 2.4046 0.0007 8 7 6.2975 4.6157 -0.0003 9 6 7.7531 4.7807 0.0001 10 6 8.0921 6.2491 -0.0007 11 7 8.2371 6.8727 -1.1527 12 6 8.5353 8.1662 -1.1909 13 8 8.6840 8.8031 -2.3779 14 6 8.6883 8.8598 0.0087 15 6 8.5327 8.1649 1.1929 16 6 8.6931 8.8674 2.5164 17 7 7.3804 9.3011 3.0013 18 6 7.2766 9.9665 4.1936 19 1 8.1618 10.1678 4.7787 20 6 6.0329 10.3779 4.6529 21 7 4.9534 10.1279 3.9425 22 14 5.8912 11.2849 6.2797 23 1 6.6834 12.5394 6.2176 24 1 4.4664 11.6114 6.5419 25 1 6.4108 10.4249 7.3730 26 7 8.2358 6.8741 1.1503 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.8427 3.6802 0.8894 35 1 3.8435 3.6791 -0.8906 36 1 5.7209 5.3956 -0.0007 37 1 8.1724 4.3109 -0.8896 38 1 8.1717 4.3114 0.8903 39 1 7.8663 9.1864 -2.7237 40 1 8.9263 9.9133 0.0123 41 1 9.3392 9.7363 2.3907 42 1 9.1397 8.1841 3.2388 43 1 6.5849 9.1169 2.4778 44 1 4.0843 10.4151 4.2636 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691415163.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:32 Heat of formation + Delta-G solvation = -19.303455 kcal Electronic energy + Delta-G solvation = -25686.765179 eV Core-core repulsion = 21766.345292 eV Total energy + Delta-G solvation = -3920.419886 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.30921 -39.68711 -37.83227 -35.74079 -35.01944 -34.68456 -33.18722 -32.01180 -30.92036 -30.25558 -27.69133 -27.06635 -26.61948 -23.55635 -22.96631 -22.09648 -21.56765 -20.83098 -18.92279 -17.93299 -17.49734 -17.30230 -16.82698 -16.02953 -15.97641 -15.89437 -15.54585 -15.40204 -14.90767 -14.30926 -14.16556 -14.00841 -13.83552 -13.73801 -13.66242 -13.36443 -13.07449 -12.95226 -12.70215 -12.46322 -12.15710 -11.96086 -11.83409 -11.52678 -11.19270 -11.11374 -10.89307 -10.70540 -10.45634 -10.23832 -10.23231 -10.15470 -9.87651 -9.47917 -9.31250 -9.25752 -9.03910 -7.85117 -7.12439 -5.90547 -3.21614 0.68896 0.94101 1.21319 2.29373 2.41292 2.86722 3.25158 3.36920 3.41552 3.42148 3.65119 3.82854 4.28457 4.42853 4.50707 4.51519 4.51784 4.72807 4.83464 4.89908 4.96734 5.05496 5.06453 5.23940 5.25384 5.29561 5.33308 5.42406 5.54129 5.62725 5.66560 5.70629 5.85697 5.89595 6.08648 6.14825 6.30203 6.41553 6.95757 7.19566 7.23403 7.56323 7.95173 8.03994 8.25434 9.37941 9.87999 10.23799 11.31825 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.007712 B = 0.002526 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3629.690549 B =11081.552210 C =13878.413880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.107 4.107 3 C -0.107 4.107 4 S -0.185 6.185 5 C -0.128 4.128 6 C 0.537 3.463 7 O -0.519 6.519 8 N -0.715 5.715 9 C 0.199 3.801 10 C 0.314 3.686 11 N -0.532 5.532 12 C 0.354 3.646 13 O -0.477 6.477 14 C -0.216 4.216 15 C 0.200 3.800 16 C 0.195 3.805 17 N -0.721 5.721 18 C -0.245 4.245 19 H 0.074 0.926 20 C -0.009 4.009 21 N -0.932 5.932 22 Si 0.912 3.088 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.284 1.284 26 N -0.491 5.491 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.405 0.595 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.407 0.593 40 H 0.157 0.843 41 H 0.045 0.955 42 H 0.049 0.951 43 H 0.385 0.615 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.792 -12.187 -12.895 18.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.146 4.146 3 C -0.256 4.256 4 S 0.042 5.958 5 C -0.280 4.280 6 C 0.321 3.679 7 O -0.394 6.394 8 N -0.369 5.369 9 C 0.074 3.926 10 C 0.045 3.955 11 N -0.258 5.258 12 C 0.166 3.834 13 O -0.284 6.284 14 C -0.240 4.240 15 C 0.055 3.945 16 C 0.068 3.932 17 N -0.367 5.367 18 C -0.375 4.375 19 H 0.092 0.908 20 C -0.206 4.206 21 N -0.580 5.580 22 Si 0.743 3.257 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.210 1.210 26 N -0.207 5.207 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.133 0.867 35 H 0.129 0.871 36 H 0.240 0.760 37 H 0.114 0.886 38 H 0.118 0.882 39 H 0.266 0.734 40 H 0.174 0.826 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.218 0.782 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.130 -14.701 -12.718 19.555 hybrid contribution -1.785 3.275 0.471 3.760 sum -3.915 -11.425 -12.247 17.200 Atomic orbital electron populations 1.21768 0.94662 1.02136 1.02116 1.21223 0.96016 0.93868 1.03470 1.23594 0.95139 1.01761 1.05068 1.87469 1.04604 1.05654 1.98087 1.23467 0.97249 0.99689 1.07548 1.19554 0.88956 0.82983 0.76401 1.90762 1.61939 1.38237 1.48445 1.45673 1.07172 1.08186 1.75858 1.19864 0.80990 0.87058 1.04737 1.22698 0.93437 0.96587 0.82765 1.67671 1.15826 1.10504 1.31798 1.19372 0.91084 0.87189 0.85711 1.84708 1.37285 1.71787 1.34616 1.22981 1.04962 1.03584 0.92500 1.22199 0.87154 0.88464 0.96679 1.19732 0.91291 0.95103 0.87095 1.42140 1.01674 1.68638 1.24201 1.19168 0.93243 1.28640 0.96486 0.90764 1.24767 0.95333 1.01456 0.99007 1.69652 0.97803 1.51572 1.38947 0.86197 0.76681 0.79584 0.83283 1.21085 1.21623 1.21049 1.68196 1.12858 1.10342 1.29305 0.92530 0.92119 0.92433 0.90976 0.90884 0.89929 0.90091 0.86729 0.87084 0.76041 0.88596 0.88212 0.73369 0.82565 0.93720 0.93338 0.78187 0.93321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.16 0.37 -0.46 16 2 C -0.11 -0.75 5.94 -26.73 -0.16 -0.90 16 3 C -0.11 -0.83 5.94 37.16 0.22 -0.61 16 4 S -0.18 -2.06 20.87 -107.50 -2.24 -4.30 16 5 C -0.13 -1.26 6.42 36.00 0.23 -1.03 16 6 C 0.54 6.86 7.85 -10.98 -0.09 6.78 16 7 O -0.52 -8.46 15.86 5.56 0.09 -8.37 16 8 N -0.72 -8.58 5.55 -61.48 -0.34 -8.92 16 9 C 0.20 2.59 6.10 -5.20 -0.03 2.56 16 10 C 0.31 4.63 7.01 -157.23 -1.10 3.53 16 11 N -0.53 -7.70 10.36 -10.78 -0.11 -7.82 16 12 C 0.35 4.83 7.83 -16.70 -0.13 4.70 16 13 O -0.48 -5.27 13.58 -18.25 -0.25 -5.52 16 14 C -0.22 -3.10 9.79 -39.16 -0.38 -3.48 16 15 C 0.20 3.36 6.18 -82.32 -0.51 2.85 16 16 C 0.20 3.73 6.61 -5.20 -0.03 3.69 16 17 N -0.72 -17.34 5.59 -61.08 -0.34 -17.68 16 18 C -0.24 -6.52 9.99 -15.06 -0.15 -6.67 16 19 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 20 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 21 N -0.93 -27.00 13.06 55.49 0.72 -26.28 16 22 Si 0.91 21.56 29.55 -169.99 -5.02 16.54 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 N -0.49 -8.24 10.27 -7.06 -0.07 -8.31 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.11 0.99 8.14 -51.92 -0.42 0.56 16 35 H 0.11 0.83 8.14 -51.92 -0.42 0.41 16 36 H 0.41 4.41 8.46 -40.82 -0.35 4.06 16 37 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.41 2.46 9.06 45.56 0.41 2.87 16 40 H 0.16 1.97 8.06 -52.48 -0.42 1.55 16 41 H 0.05 0.79 8.06 -51.93 -0.42 0.37 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.38 9.86 7.66 -40.82 -0.31 9.55 16 44 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 396.26 15.07 5.97 5.97 Total: -1.00 -33.74 396.26 -9.17 -42.91 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -5.71 Total: 11.17 kcal Atomic # 6 Polarization: 12.48 SS G_CDS: -1.86 Total: 10.62 kcal Atomic # 7 Polarization: -68.87 SS G_CDS: -0.14 Total: -69.01 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: -0.16 Total: -13.89 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -2.06 SS G_CDS: -2.24 Total: -4.30 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.74 -9.17 -42.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691415163.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.603 kcal (2) G-P(sol) polarization free energy of solvation -33.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds