Wall clock time and date at job start Sat Apr 11 2020 05:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46790 * 2 1 4 4 S 1.81405 * 109.46881 * 179.97438 * 3 2 1 5 5 C 1.81391 * 103.00111 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.47272 * 180.02562 * 5 4 3 7 7 O 1.21280 * 119.99937 * 359.97438 * 6 5 4 8 8 N 1.34783 * 120.00199 * 180.02562 * 6 5 4 9 9 C 1.46490 * 119.99973 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.47167 * 179.97438 * 9 8 6 11 11 N 1.31789 * 119.09648 * 269.98067 * 10 9 8 12 12 C 1.32799 * 120.71637 * 179.97438 * 11 10 9 13 13 O 1.35519 * 120.50861 * 179.97438 * 12 11 10 14 14 C 1.39416 * 118.97466 * 359.74609 * 12 11 10 15 15 C 1.38181 * 118.35119 * 0.51526 * 14 12 11 16 16 C 1.50697 * 120.41367 * 179.76229 * 15 14 12 17 17 N 1.46499 * 109.47276 * 94.71971 * 16 15 14 18 18 C 1.36935 * 119.99938 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00518 * 359.72965 * 18 17 16 20 20 C 1.38817 * 119.99990 * 179.97438 * 18 17 16 21 21 N 1.31617 * 119.99869 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99909 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47028 * 60.00888 * 22 20 18 24 24 H 1.48503 * 109.46851 * 180.02562 * 22 20 18 25 25 H 1.48492 * 109.47412 * 300.00497 * 22 20 18 26 26 N 1.31763 * 119.09108 * 90.00041 * 10 9 8 27 27 H 1.08997 * 109.47566 * 59.99961 * 1 2 3 28 28 H 1.08999 * 109.47263 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47241 * 300.00363 * 1 2 3 30 30 H 1.08998 * 109.46736 * 239.99705 * 2 1 3 31 31 H 1.08997 * 109.46968 * 119.99570 * 2 1 3 32 32 H 1.09000 * 109.47041 * 60.00027 * 3 2 1 33 33 H 1.08997 * 109.47014 * 299.99542 * 3 2 1 34 34 H 1.09003 * 109.47259 * 59.99673 * 5 4 3 35 35 H 1.09006 * 109.47147 * 300.00053 * 5 4 3 36 36 H 0.96998 * 119.99587 * 359.97438 * 8 6 5 37 37 H 1.09004 * 109.47512 * 60.00127 * 9 8 6 38 38 H 1.08994 * 109.47511 * 300.00073 * 9 8 6 39 39 H 0.96702 * 114.00026 * 90.00217 * 13 12 11 40 40 H 1.08004 * 120.81960 * 180.27450 * 14 12 11 41 41 H 1.09004 * 109.47205 * 334.71946 * 16 15 14 42 42 H 1.09005 * 109.47240 * 214.72155 * 16 15 14 43 43 H 0.96999 * 119.99984 * 0.02562 * 17 16 15 44 44 H 0.96996 * 119.99743 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 16 3.8540 1.4426 0.0008 5 6 4.2620 3.2100 -0.0001 6 6 5.7594 3.3799 -0.0002 7 8 6.4803 2.4046 0.0007 8 7 6.2975 4.6157 -0.0003 9 6 7.7531 4.7807 0.0001 10 6 8.0921 6.2491 -0.0007 11 7 8.2371 6.8727 -1.1527 12 6 8.5353 8.1662 -1.1909 13 8 8.6840 8.8031 -2.3779 14 6 8.6883 8.8598 0.0087 15 6 8.5327 8.1649 1.1929 16 6 8.6931 8.8674 2.5164 17 7 7.3804 9.3011 3.0013 18 6 7.2766 9.9665 4.1936 19 1 8.1618 10.1678 4.7787 20 6 6.0329 10.3779 4.6529 21 7 4.9534 10.1279 3.9425 22 14 5.8912 11.2849 6.2797 23 1 6.6834 12.5394 6.2176 24 1 4.4664 11.6114 6.5419 25 1 6.4108 10.4249 7.3730 26 7 8.2358 6.8741 1.1503 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.8427 3.6802 0.8894 35 1 3.8435 3.6791 -0.8906 36 1 5.7209 5.3956 -0.0007 37 1 8.1724 4.3109 -0.8896 38 1 8.1717 4.3114 0.8903 39 1 7.8663 9.1864 -2.7237 40 1 8.9263 9.9133 0.0123 41 1 9.3392 9.7363 2.3907 42 1 9.1397 8.1841 3.2388 43 1 6.5849 9.1169 2.4778 44 1 4.0843 10.4151 4.2636 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691415163.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:32 Heat of formation + Delta-G solvation = -46.509990 kcal Electronic energy + Delta-G solvation = -25687.944942 eV Core-core repulsion = 21766.345292 eV Total energy + Delta-G solvation = -3921.599650 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.46328 -40.73707 -38.82488 -37.18708 -36.00205 -35.54810 -34.65886 -33.22256 -32.52113 -31.30442 -28.43443 -28.21455 -27.93489 -25.24316 -24.17494 -23.01730 -22.62890 -21.79733 -19.98609 -19.44411 -18.84237 -18.47715 -17.80105 -17.03054 -16.91118 -16.87616 -16.71447 -16.47180 -16.21576 -15.67344 -15.41491 -15.18721 -14.90573 -14.70260 -14.58143 -14.40581 -14.30630 -14.13580 -13.75436 -13.56489 -13.24699 -13.14985 -12.96788 -12.72977 -12.39642 -12.17870 -12.09009 -11.98226 -11.81641 -11.71708 -11.53102 -11.31096 -11.00198 -10.90560 -10.63244 -10.44327 -10.35762 -9.07943 -8.70376 -7.97228 -5.27768 -0.43500 -0.23103 0.43113 1.41856 1.50212 1.52680 1.57244 1.58258 1.85255 2.23586 2.48428 2.57599 2.70717 3.11370 3.37891 3.56143 3.77385 3.87852 3.90447 3.96279 4.00580 4.09369 4.12760 4.20605 4.24061 4.39529 4.44717 4.54394 4.56291 4.68852 4.79045 4.85412 4.88154 5.06968 5.11339 5.15535 5.20055 5.38687 5.49199 5.79819 6.22019 6.22678 6.46080 6.87140 6.96765 7.30296 7.96351 8.22503 9.25688 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.007712 B = 0.002526 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3629.690549 B =11081.552210 C =13878.413880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 C -0.090 4.090 4 S -0.251 6.251 5 C -0.115 4.115 6 C 0.535 3.465 7 O -0.558 6.558 8 N -0.708 5.708 9 C 0.203 3.797 10 C 0.317 3.683 11 N -0.535 5.535 12 C 0.364 3.636 13 O -0.474 6.474 14 C -0.210 4.210 15 C 0.183 3.817 16 C 0.197 3.803 17 N -0.732 5.732 18 C -0.247 4.247 19 H 0.083 0.917 20 C -0.069 4.069 21 N -0.967 5.967 22 Si 0.975 3.025 23 H -0.274 1.274 24 H -0.297 1.297 25 H -0.280 1.280 26 N -0.515 5.515 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.129 0.871 35 H 0.139 0.861 36 H 0.412 0.588 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.431 0.569 40 H 0.175 0.825 41 H 0.065 0.935 42 H 0.041 0.959 43 H 0.374 0.626 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.178 -11.282 -13.681 18.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.146 4.146 3 C -0.238 4.238 4 S -0.024 6.024 5 C -0.265 4.265 6 C 0.321 3.679 7 O -0.436 6.436 8 N -0.361 5.361 9 C 0.077 3.923 10 C 0.048 3.952 11 N -0.261 5.261 12 C 0.176 3.824 13 O -0.285 6.285 14 C -0.234 4.234 15 C 0.039 3.961 16 C 0.071 3.929 17 N -0.376 5.376 18 C -0.378 4.378 19 H 0.101 0.899 20 C -0.262 4.262 21 N -0.617 5.617 22 Si 0.803 3.197 23 H -0.200 1.200 24 H -0.223 1.223 25 H -0.206 1.206 26 N -0.232 5.232 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.108 0.892 33 H 0.114 0.886 34 H 0.147 0.853 35 H 0.157 0.843 36 H 0.248 0.752 37 H 0.120 0.880 38 H 0.110 0.890 39 H 0.294 0.706 40 H 0.192 0.808 41 H 0.083 0.917 42 H 0.059 0.941 43 H 0.205 0.795 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.493 -13.765 -13.520 19.454 hybrid contribution -1.599 2.976 0.601 3.432 sum -4.092 -10.789 -12.919 17.321 Atomic orbital electron populations 1.21742 0.93257 1.02745 1.02536 1.21242 0.97043 0.93353 1.02945 1.23622 0.91650 1.02434 1.06074 1.87712 1.08687 1.07742 1.98283 1.23424 0.94953 0.98605 1.09539 1.20046 0.90121 0.82416 0.75340 1.90745 1.63132 1.39431 1.50297 1.45624 1.06836 1.08376 1.75305 1.19798 0.81689 0.86170 1.04630 1.22819 0.93078 0.96916 0.82392 1.67759 1.15927 1.10999 1.31429 1.19429 0.89628 0.86918 0.86390 1.84675 1.39019 1.71538 1.33263 1.23074 1.04170 1.04287 0.91842 1.21887 0.88993 0.88780 0.96441 1.19759 0.89195 0.95727 0.88230 1.42260 1.03152 1.68584 1.23569 1.19588 0.93467 1.27608 0.97167 0.89945 1.25553 0.95248 1.03102 1.02307 1.69798 0.97981 1.53305 1.40577 0.85200 0.76175 0.78706 0.79580 1.20014 1.22291 1.20627 1.68118 1.13809 1.10729 1.30509 0.91864 0.91486 0.92214 0.91328 0.91705 0.89220 0.88640 0.85274 0.84325 0.75246 0.88043 0.89002 0.70574 0.80774 0.91747 0.94071 0.79484 0.93927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.91 71.98 0.71 -0.66 16 2 C -0.11 -1.40 5.94 30.60 0.18 -1.22 16 3 C -0.09 -1.27 5.94 71.98 0.43 -0.84 16 4 S -0.25 -5.54 20.87 -56.49 -1.18 -6.71 16 5 C -0.11 -2.12 6.42 71.24 0.46 -1.67 16 6 C 0.53 13.52 7.85 87.66 0.69 14.21 16 7 O -0.56 -18.53 15.86 -3.03 -0.05 -18.58 16 8 N -0.71 -16.61 5.55 -466.81 -2.59 -19.20 16 9 C 0.20 5.24 6.10 85.63 0.52 5.77 16 10 C 0.32 9.12 7.01 138.76 0.97 10.09 16 11 N -0.53 -14.63 10.36 -300.69 -3.12 -17.75 16 12 C 0.36 9.15 7.83 84.83 0.66 9.81 16 13 O -0.47 -9.06 13.58 -88.22 -1.20 -10.26 16 14 C -0.21 -5.63 9.79 22.54 0.22 -5.41 16 15 C 0.18 6.01 6.18 42.44 0.26 6.27 16 16 C 0.20 7.40 6.61 85.63 0.57 7.97 16 17 N -0.73 -35.07 5.59 -347.17 -1.94 -37.01 16 18 C -0.25 -13.04 9.99 84.04 0.84 -12.20 16 19 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 20 C -0.07 -3.80 5.50 84.86 0.47 -3.34 16 21 N -0.97 -56.42 13.06 21.65 0.28 -56.14 16 22 Si 0.97 44.12 29.55 68.60 2.03 46.15 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 24 H -0.30 -13.60 7.11 99.48 0.71 -12.90 16 25 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 26 N -0.51 -17.12 10.27 -176.24 -1.81 -18.93 16 27 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.14 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.41 8.57 8.46 -92.71 -0.78 7.79 16 37 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 39 H 0.43 3.77 9.06 -74.06 -0.67 3.10 16 40 H 0.17 3.95 8.06 -2.91 -0.02 3.93 16 41 H 0.06 2.18 8.06 -2.38 -0.02 2.16 16 42 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 43 H 0.37 19.30 7.66 -92.71 -0.71 18.59 16 44 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -72.42 396.26 -3.70 -76.12 By element: Atomic # 1 Polarization: 34.63 SS G_CDS: -1.11 Total: 33.51 kcal Atomic # 6 Polarization: 21.81 SS G_CDS: 6.98 Total: 28.80 kcal Atomic # 7 Polarization: -139.85 SS G_CDS: -9.17 Total: -149.03 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -1.25 Total: -28.84 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 16 Polarization: -5.54 SS G_CDS: -1.18 Total: -6.71 kcal Total: -72.42 -3.70 -76.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691415163.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.615 kcal (2) G-P(sol) polarization free energy of solvation -72.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds