Wall clock time and date at job start Sat Apr 11 2020 05:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46833 * 2 1 4 4 H 1.08997 * 109.47522 * 305.84315 * 3 2 1 5 5 S 1.81410 * 109.47029 * 65.83891 * 3 2 1 6 6 C 1.81400 * 103.00137 * 186.57824 * 5 3 2 7 7 C 1.50699 * 109.47465 * 185.84103 * 3 2 1 8 8 O 1.21286 * 119.99589 * 265.00112 * 7 3 2 9 9 N 1.34767 * 120.00248 * 84.99890 * 7 3 2 10 10 C 1.46502 * 120.00434 * 180.02562 * 9 7 3 11 11 C 1.50697 * 109.47633 * 180.02562 * 10 9 7 12 12 N 1.31794 * 119.09554 * 89.99546 * 11 10 9 13 13 C 1.32789 * 120.71838 * 179.97438 * 12 11 10 14 14 O 1.35516 * 120.51173 * 179.97438 * 13 12 11 15 15 C 1.39425 * 118.97665 * 0.02562 * 13 12 11 16 16 C 1.38192 * 118.34730 * 359.97438 * 15 13 12 17 17 C 1.50698 * 120.40883 * 180.02562 * 16 15 13 18 18 N 1.46491 * 109.47521 * 94.99738 * 17 16 15 19 19 C 1.36936 * 120.00391 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99669 * 0.02562 * 19 18 17 21 21 C 1.38817 * 120.00267 * 180.02562 * 19 18 17 22 22 N 1.31611 * 119.99971 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 119.99826 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.47413 * 60.00181 * 23 21 19 25 25 H 1.48500 * 109.47284 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47775 * 300.00033 * 23 21 19 27 27 N 1.31760 * 119.09009 * 269.73819 * 11 10 9 28 28 H 1.09006 * 109.46703 * 174.42821 * 1 2 3 29 29 H 1.09007 * 109.47226 * 294.41685 * 1 2 3 30 30 H 1.08991 * 109.47844 * 54.42635 * 1 2 3 31 31 H 1.09002 * 109.47355 * 240.00661 * 2 1 3 32 32 H 1.09000 * 109.47490 * 120.00135 * 2 1 3 33 33 H 1.09002 * 109.46755 * 64.67424 * 6 5 3 34 34 H 1.08999 * 109.47200 * 184.67410 * 6 5 3 35 35 H 1.09001 * 109.46983 * 304.67375 * 6 5 3 36 36 H 0.97008 * 119.99643 * 0.02562 * 9 7 3 37 37 H 1.09003 * 109.46602 * 59.99899 * 10 9 7 38 38 H 1.08996 * 109.46983 * 300.00727 * 10 9 7 39 39 H 0.96699 * 114.00247 * 90.00135 * 14 13 12 40 40 H 1.07996 * 120.82260 * 180.02562 * 15 13 12 41 41 H 1.08998 * 109.46806 * 214.99932 * 17 16 15 42 42 H 1.09007 * 109.46826 * 334.99566 * 17 16 15 43 43 H 0.97006 * 120.00266 * 0.02562 * 18 17 16 44 44 H 0.97000 * 120.00282 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5937 1.9857 -0.8330 5 16 1.5814 2.2459 1.5605 6 6 2.0817 3.9692 1.2947 7 6 3.5399 1.4451 -0.1446 8 8 4.2440 1.5022 0.8413 9 7 4.0990 1.3841 -1.3693 10 6 5.5573 1.3861 -1.5099 11 6 5.9213 1.3119 -2.9703 12 7 6.0687 2.4304 -3.6517 13 6 6.3897 2.4027 -4.9399 14 8 6.5397 3.5553 -5.6366 15 6 6.5689 1.1693 -5.5649 16 6 6.4043 0.0222 -4.8122 17 6 6.5874 -1.3353 -5.4405 18 7 7.9565 -1.8011 -5.2067 19 6 8.3572 -3.0187 -5.6883 20 1 7.6639 -3.6355 -6.2409 21 6 9.6544 -3.4603 -5.4663 22 7 10.4990 -2.7089 -4.7925 23 14 10.2006 -5.1216 -6.1227 24 1 10.0639 -5.1389 -7.6014 25 1 11.6195 -5.3575 -5.7536 26 1 9.3526 -6.1895 -5.5347 27 7 6.0886 0.1307 -3.5297 28 1 -0.3633 -1.0229 -0.0998 29 1 -0.3634 0.4248 0.9358 30 1 -0.3634 0.5978 -0.8358 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.4829 4.4018 0.4932 34 1 1.9268 4.5381 2.2115 35 1 3.1359 4.0032 1.0197 36 1 3.5358 1.3388 -2.1578 37 1 5.9738 0.5251 -0.9870 38 1 5.9623 2.3025 -1.0808 39 1 7.4403 3.9072 -5.6256 40 1 6.8306 1.1120 -6.6111 41 1 5.8834 -2.0390 -4.9965 42 1 6.4051 -1.2668 -6.5130 43 1 8.5791 -1.2473 -4.7100 44 1 11.4056 -3.0172 -4.6376 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692127161.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:38 Heat of formation + Delta-G solvation = -15.150717 kcal Electronic energy + Delta-G solvation = -26445.261776 eV Core-core repulsion = 22525.021966 eV Total energy + Delta-G solvation = -3920.239810 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.32881 -39.93089 -37.85035 -35.77269 -35.04577 -34.69582 -33.17682 -31.88280 -30.71208 -29.53915 -28.66985 -26.92236 -26.61765 -23.55773 -23.03696 -22.40793 -21.58688 -20.87313 -18.93853 -17.98834 -17.58633 -17.33395 -17.15863 -16.14010 -15.72006 -15.53801 -15.33948 -15.14231 -14.95041 -14.50949 -14.22098 -14.04424 -13.84634 -13.66998 -13.39987 -13.31304 -13.03524 -12.79552 -12.71335 -12.52655 -12.32006 -12.17256 -11.95162 -11.56451 -11.36011 -11.10033 -10.87586 -10.72229 -10.46063 -10.34296 -10.21979 -10.13391 -9.85591 -9.48225 -9.36733 -9.26927 -9.02179 -7.88133 -7.10663 -5.87633 -3.19488 0.67862 0.92839 1.23624 2.09349 2.39207 2.87803 3.11556 3.38460 3.42963 3.44143 3.70049 3.78886 4.24944 4.31361 4.34469 4.53020 4.57812 4.82386 4.86273 4.90762 4.93422 5.02523 5.06564 5.22553 5.28158 5.34321 5.42780 5.46054 5.52617 5.61746 5.67098 5.71962 5.91082 5.92726 6.02671 6.13354 6.29305 6.39889 6.94146 7.12665 7.21849 7.57753 7.88912 8.02503 8.27883 9.40145 9.90376 10.25785 11.34594 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012366 B = 0.002393 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.767569 B =11699.395934 C =12953.430687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.100 4.100 3 C -0.084 4.084 4 H 0.106 0.894 5 S -0.194 6.194 6 C -0.132 4.132 7 C 0.513 3.487 8 O -0.512 6.512 9 N -0.715 5.715 10 C 0.196 3.804 11 C 0.315 3.685 12 N -0.533 5.533 13 C 0.354 3.646 14 O -0.478 6.478 15 C -0.216 4.216 16 C 0.200 3.800 17 C 0.196 3.804 18 N -0.722 5.722 19 C -0.247 4.247 20 H 0.074 0.926 21 C -0.009 4.009 22 N -0.930 5.930 23 Si 0.913 3.087 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.284 1.284 27 N -0.490 5.490 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.402 0.598 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.408 0.592 40 H 0.157 0.843 41 H 0.048 0.952 42 H 0.045 0.955 43 H 0.385 0.615 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.329 13.826 5.469 23.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.138 4.138 3 C -0.216 4.216 4 H 0.124 0.876 5 S 0.033 5.967 6 C -0.301 4.301 7 C 0.295 3.705 8 O -0.386 6.386 9 N -0.369 5.369 10 C 0.071 3.929 11 C 0.046 3.954 12 N -0.259 5.259 13 C 0.167 3.833 14 O -0.285 6.285 15 C -0.240 4.240 16 C 0.055 3.945 17 C 0.069 3.931 18 N -0.367 5.367 19 C -0.377 4.377 20 H 0.092 0.908 21 C -0.205 4.205 22 N -0.578 5.578 23 Si 0.743 3.257 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.210 1.210 27 N -0.207 5.207 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.121 0.879 35 H 0.098 0.902 36 H 0.236 0.764 37 H 0.120 0.880 38 H 0.113 0.887 39 H 0.267 0.733 40 H 0.174 0.826 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.219 0.781 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -19.062 13.303 7.792 24.516 hybrid contribution 1.778 0.111 -2.670 3.210 sum -17.284 13.414 5.122 22.470 Atomic orbital electron populations 1.21823 0.93934 1.02274 1.02861 1.21307 0.97357 0.91041 1.04138 1.23600 0.94965 1.02575 1.00468 0.87622 1.86726 1.79699 1.07093 1.23176 1.23480 1.04864 0.95617 1.06117 1.20474 0.90219 0.76727 0.83086 1.90783 1.62950 1.47829 1.37048 1.45783 1.07044 1.75602 1.08444 1.19901 0.80705 1.04828 0.87462 1.22678 0.93540 0.82913 0.96307 1.67667 1.16287 1.33724 1.08254 1.19369 0.91561 0.85941 0.86474 1.84689 1.36067 1.38072 1.69676 1.22986 1.04296 0.92480 1.04275 1.22213 0.87013 0.97135 0.88103 1.19718 0.90636 0.86424 0.96353 1.42159 1.06326 1.21056 1.67163 1.19148 0.95523 0.94271 1.28797 0.90784 1.24783 0.96362 0.98798 1.00589 1.69654 1.05722 1.37733 1.44684 0.86198 0.77580 0.83473 0.78470 1.21095 1.21604 1.21045 1.68194 1.12921 1.27275 1.12261 0.91947 0.91403 0.92403 0.89936 0.90048 0.90578 0.87874 0.90156 0.76438 0.87998 0.88690 0.73262 0.82559 0.93440 0.93794 0.78095 0.93235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.65 37.16 0.36 -0.65 16 2 C -0.10 -0.81 5.37 -26.73 -0.14 -0.96 16 3 C -0.08 -0.75 2.60 -27.88 -0.07 -0.83 16 4 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 5 S -0.19 -1.93 20.05 -107.50 -2.16 -4.08 16 6 C -0.13 -1.07 10.60 101.05 1.07 0.01 16 7 C 0.51 5.98 6.58 -10.99 -0.07 5.91 16 8 O -0.51 -7.82 16.14 5.55 0.09 -7.73 16 9 N -0.72 -7.80 5.55 -61.47 -0.34 -8.14 16 10 C 0.20 2.53 6.10 -5.19 -0.03 2.49 16 11 C 0.31 4.60 7.01 -157.23 -1.10 3.50 16 12 N -0.53 -7.66 10.36 -10.78 -0.11 -7.77 16 13 C 0.35 4.81 7.83 -16.70 -0.13 4.68 16 14 O -0.48 -5.24 13.58 -18.24 -0.25 -5.48 16 15 C -0.22 -3.09 9.79 -39.16 -0.38 -3.48 16 16 C 0.20 3.35 6.18 -82.31 -0.51 2.84 16 17 C 0.20 3.74 6.61 -5.20 -0.03 3.70 16 18 N -0.72 -17.63 5.59 -61.09 -0.34 -17.98 16 19 C -0.25 -6.64 9.99 -15.06 -0.15 -6.79 16 20 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 21 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 22 N -0.93 -27.59 13.06 55.49 0.72 -26.87 16 23 Si 0.91 21.79 29.55 -169.99 -5.02 16.76 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 N -0.49 -8.19 10.27 -7.05 -0.07 -8.26 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.49 7.37 -51.93 -0.38 0.10 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 34 H 0.10 0.70 8.14 -51.92 -0.42 0.28 16 35 H 0.08 0.75 7.93 -51.92 -0.41 0.34 16 36 H 0.40 3.72 8.46 -40.82 -0.35 3.38 16 37 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 38 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.41 2.54 9.06 45.56 0.41 2.95 16 40 H 0.16 1.96 8.06 -52.49 -0.42 1.54 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.04 0.77 8.06 -51.93 -0.42 0.36 16 43 H 0.39 10.17 7.66 -40.82 -0.31 9.85 16 44 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 393.47 15.07 5.93 5.93 Total: -1.00 -33.73 393.47 -8.50 -42.23 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -5.65 Total: 11.31 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: -1.30 Total: 10.09 kcal Atomic # 7 Polarization: -68.87 SS G_CDS: -0.14 Total: -69.02 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -0.16 Total: -13.22 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: -1.93 SS G_CDS: -2.16 Total: -4.08 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.73 -8.50 -42.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692127161.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.077 kcal (2) G-P(sol) polarization free energy of solvation -33.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds