Wall clock time and date at job start Sat Apr 11 2020 05:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46833 * 2 1 4 4 H 1.08997 * 109.47522 * 305.84315 * 3 2 1 5 5 S 1.81410 * 109.47029 * 65.83891 * 3 2 1 6 6 C 1.81400 * 103.00137 * 186.57824 * 5 3 2 7 7 C 1.50699 * 109.47465 * 185.84103 * 3 2 1 8 8 O 1.21286 * 119.99589 * 265.00112 * 7 3 2 9 9 N 1.34767 * 120.00248 * 84.99890 * 7 3 2 10 10 C 1.46502 * 120.00434 * 180.02562 * 9 7 3 11 11 C 1.50697 * 109.47633 * 180.02562 * 10 9 7 12 12 N 1.31794 * 119.09554 * 89.99546 * 11 10 9 13 13 C 1.32789 * 120.71838 * 179.97438 * 12 11 10 14 14 O 1.35516 * 120.51173 * 179.97438 * 13 12 11 15 15 C 1.39425 * 118.97665 * 0.02562 * 13 12 11 16 16 C 1.38192 * 118.34730 * 359.97438 * 15 13 12 17 17 C 1.50698 * 120.40883 * 180.02562 * 16 15 13 18 18 N 1.46491 * 109.47521 * 94.99738 * 17 16 15 19 19 C 1.36936 * 120.00391 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99669 * 0.02562 * 19 18 17 21 21 C 1.38817 * 120.00267 * 180.02562 * 19 18 17 22 22 N 1.31611 * 119.99971 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 119.99826 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.47413 * 60.00181 * 23 21 19 25 25 H 1.48500 * 109.47284 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47775 * 300.00033 * 23 21 19 27 27 N 1.31760 * 119.09009 * 269.73819 * 11 10 9 28 28 H 1.09006 * 109.46703 * 174.42821 * 1 2 3 29 29 H 1.09007 * 109.47226 * 294.41685 * 1 2 3 30 30 H 1.08991 * 109.47844 * 54.42635 * 1 2 3 31 31 H 1.09002 * 109.47355 * 240.00661 * 2 1 3 32 32 H 1.09000 * 109.47490 * 120.00135 * 2 1 3 33 33 H 1.09002 * 109.46755 * 64.67424 * 6 5 3 34 34 H 1.08999 * 109.47200 * 184.67410 * 6 5 3 35 35 H 1.09001 * 109.46983 * 304.67375 * 6 5 3 36 36 H 0.97008 * 119.99643 * 0.02562 * 9 7 3 37 37 H 1.09003 * 109.46602 * 59.99899 * 10 9 7 38 38 H 1.08996 * 109.46983 * 300.00727 * 10 9 7 39 39 H 0.96699 * 114.00247 * 90.00135 * 14 13 12 40 40 H 1.07996 * 120.82260 * 180.02562 * 15 13 12 41 41 H 1.08998 * 109.46806 * 214.99932 * 17 16 15 42 42 H 1.09007 * 109.46826 * 334.99566 * 17 16 15 43 43 H 0.97006 * 120.00266 * 0.02562 * 18 17 16 44 44 H 0.97000 * 120.00282 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5937 1.9857 -0.8330 5 16 1.5814 2.2459 1.5605 6 6 2.0817 3.9692 1.2947 7 6 3.5399 1.4451 -0.1446 8 8 4.2440 1.5022 0.8413 9 7 4.0990 1.3841 -1.3693 10 6 5.5573 1.3861 -1.5099 11 6 5.9213 1.3119 -2.9703 12 7 6.0687 2.4304 -3.6517 13 6 6.3897 2.4027 -4.9399 14 8 6.5397 3.5553 -5.6366 15 6 6.5689 1.1693 -5.5649 16 6 6.4043 0.0222 -4.8122 17 6 6.5874 -1.3353 -5.4405 18 7 7.9565 -1.8011 -5.2067 19 6 8.3572 -3.0187 -5.6883 20 1 7.6639 -3.6355 -6.2409 21 6 9.6544 -3.4603 -5.4663 22 7 10.4990 -2.7089 -4.7925 23 14 10.2006 -5.1216 -6.1227 24 1 10.0639 -5.1389 -7.6014 25 1 11.6195 -5.3575 -5.7536 26 1 9.3526 -6.1895 -5.5347 27 7 6.0886 0.1307 -3.5297 28 1 -0.3633 -1.0229 -0.0998 29 1 -0.3634 0.4248 0.9358 30 1 -0.3634 0.5978 -0.8358 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.4829 4.4018 0.4932 34 1 1.9268 4.5381 2.2115 35 1 3.1359 4.0032 1.0197 36 1 3.5358 1.3388 -2.1578 37 1 5.9738 0.5251 -0.9870 38 1 5.9623 2.3025 -1.0808 39 1 7.4403 3.9072 -5.6256 40 1 6.8306 1.1120 -6.6111 41 1 5.8834 -2.0390 -4.9965 42 1 6.4051 -1.2668 -6.5130 43 1 8.5791 -1.2473 -4.7100 44 1 11.4056 -3.0172 -4.6376 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692127161.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:38 Heat of formation + Delta-G solvation = -42.794052 kcal Electronic energy + Delta-G solvation = -26446.460481 eV Core-core repulsion = 22525.021966 eV Total energy + Delta-G solvation = -3921.438515 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.47519 -40.90598 -38.83470 -37.20177 -36.00978 -35.73784 -34.64005 -33.16288 -32.37114 -30.27815 -29.45818 -28.26127 -27.81022 -25.25378 -24.20743 -23.20955 -22.87952 -21.79326 -19.99454 -19.45138 -18.87956 -18.53068 -18.08380 -17.11404 -16.85519 -16.62818 -16.46679 -16.34024 -15.94088 -15.72883 -15.45243 -15.39015 -14.93231 -14.72772 -14.43793 -14.31381 -14.14819 -14.06944 -13.68448 -13.51967 -13.19522 -13.14063 -13.00158 -12.97714 -12.72521 -12.18667 -12.18503 -12.00075 -11.98738 -11.82783 -11.53906 -11.18568 -11.01081 -10.99599 -10.61125 -10.45026 -10.36088 -9.09281 -8.64775 -7.97653 -5.29023 -0.44249 -0.24139 0.50545 1.32419 1.49352 1.51493 1.52533 1.58338 1.95067 2.07245 2.50283 2.61775 2.69612 3.09945 3.37516 3.45975 3.66292 3.76103 3.86818 3.91151 4.08183 4.11249 4.19187 4.26484 4.29770 4.32608 4.40418 4.45433 4.54254 4.75794 4.78700 4.84215 4.87951 5.04974 5.07530 5.09664 5.13425 5.39889 5.48215 5.78921 6.21063 6.23866 6.43616 6.86059 6.97564 7.28788 7.95855 8.20722 9.25517 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012366 B = 0.002393 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.767569 B =11699.395934 C =12953.430687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 C -0.073 4.073 4 H 0.133 0.867 5 S -0.230 6.230 6 C -0.124 4.124 7 C 0.514 3.486 8 O -0.553 6.553 9 N -0.705 5.705 10 C 0.202 3.798 11 C 0.317 3.683 12 N -0.536 5.536 13 C 0.364 3.636 14 O -0.474 6.474 15 C -0.210 4.210 16 C 0.184 3.816 17 C 0.198 3.802 18 N -0.735 5.735 19 C -0.246 4.246 20 H 0.086 0.914 21 C -0.073 4.073 22 N -0.970 5.970 23 Si 0.977 3.023 24 H -0.272 1.272 25 H -0.299 1.299 26 H -0.278 1.278 27 N -0.514 5.514 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.064 0.936 36 H 0.412 0.588 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.430 0.570 40 H 0.175 0.825 41 H 0.044 0.956 42 H 0.066 0.934 43 H 0.372 0.628 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.894 14.632 3.940 25.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.137 4.137 3 C -0.205 4.205 4 H 0.151 0.849 5 S -0.003 6.003 6 C -0.292 4.292 7 C 0.298 3.702 8 O -0.430 6.430 9 N -0.358 5.358 10 C 0.076 3.924 11 C 0.048 3.952 12 N -0.262 5.262 13 C 0.176 3.824 14 O -0.285 6.285 15 C -0.234 4.234 16 C 0.040 3.960 17 C 0.072 3.928 18 N -0.378 5.378 19 C -0.377 4.377 20 H 0.104 0.896 21 C -0.265 4.265 22 N -0.621 5.621 23 Si 0.806 3.194 24 H -0.198 1.198 25 H -0.225 1.225 26 H -0.204 1.204 27 N -0.231 5.231 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.081 0.919 33 H 0.114 0.886 34 H 0.132 0.868 35 H 0.083 0.917 36 H 0.248 0.752 37 H 0.105 0.895 38 H 0.116 0.884 39 H 0.294 0.706 40 H 0.192 0.808 41 H 0.062 0.938 42 H 0.084 0.916 43 H 0.203 0.797 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -20.679 14.122 6.214 25.801 hybrid contribution 2.201 -0.012 -2.215 3.123 sum -18.478 14.110 3.999 23.591 Atomic orbital electron populations 1.21782 0.92486 1.02957 1.03093 1.21325 0.98542 0.90314 1.03558 1.23616 0.92755 1.03366 1.00742 0.84912 1.86861 1.79560 1.09148 1.24728 1.23508 1.04106 0.94169 1.07465 1.20956 0.91251 0.75557 0.82485 1.90767 1.64136 1.49728 1.38319 1.45683 1.06316 1.75003 1.08820 1.19758 0.81868 1.04296 0.86458 1.22794 0.93185 0.82506 0.96686 1.67753 1.16392 1.33340 1.08710 1.19428 0.90246 0.86569 0.86127 1.84657 1.38031 1.36810 1.68975 1.23085 1.03465 0.91926 1.04941 1.21900 0.88807 0.96792 0.88546 1.19771 0.87686 0.87735 0.97648 1.42318 1.08308 1.20371 1.66847 1.19609 0.95612 0.94995 1.27486 0.89645 1.25616 0.96795 1.02383 1.01749 1.69818 1.05749 1.39585 1.46898 0.85160 0.76449 0.79449 0.78362 1.19791 1.22505 1.20430 1.68117 1.13921 1.28482 1.12595 0.91281 0.92031 0.91046 0.89259 0.91893 0.88561 0.86768 0.91655 0.75220 0.89470 0.88395 0.70608 0.80770 0.93830 0.91612 0.79689 0.93964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.65 71.98 0.69 -1.02 16 2 C -0.10 -1.52 5.37 30.59 0.16 -1.36 16 3 C -0.07 -1.23 2.60 29.85 0.08 -1.15 16 4 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 5 S -0.23 -4.43 20.05 -56.49 -1.13 -5.56 16 6 C -0.12 -1.85 10.60 113.37 1.20 -0.65 16 7 C 0.51 11.78 6.58 87.66 0.58 12.35 16 8 O -0.55 -17.18 16.14 -3.05 -0.05 -17.23 16 9 N -0.70 -14.83 5.55 -466.80 -2.59 -17.42 16 10 C 0.20 5.18 6.10 85.63 0.52 5.70 16 11 C 0.32 9.05 7.01 138.76 0.97 10.02 16 12 N -0.54 -14.50 10.36 -300.70 -3.12 -17.61 16 13 C 0.36 9.06 7.83 84.83 0.66 9.73 16 14 O -0.47 -8.94 13.58 -88.18 -1.20 -10.14 16 15 C -0.21 -5.60 9.79 22.54 0.22 -5.38 16 16 C 0.18 5.98 6.18 42.44 0.26 6.24 16 17 C 0.20 7.37 6.61 85.63 0.57 7.93 16 18 N -0.74 -35.89 5.59 -347.19 -1.94 -37.83 16 19 C -0.25 -13.12 9.99 84.03 0.84 -12.28 16 20 H 0.09 4.26 7.83 -2.91 -0.02 4.24 16 21 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 22 N -0.97 -58.53 13.06 21.65 0.28 -58.25 16 23 Si 0.98 44.80 29.55 68.60 2.03 46.82 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 25 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 26 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 27 N -0.51 -16.98 10.27 -176.23 -1.81 -18.79 16 28 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 29 H 0.06 0.82 7.37 -2.38 -0.02 0.80 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.06 1.18 7.93 -2.39 -0.02 1.16 16 36 H 0.41 7.01 8.46 -92.70 -0.78 6.23 16 37 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 39 H 0.43 3.97 9.06 -74.06 -0.67 3.30 16 40 H 0.17 3.92 8.06 -2.91 -0.02 3.90 16 41 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.07 2.18 8.06 -2.38 -0.02 2.16 16 43 H 0.37 19.91 7.66 -92.70 -0.71 19.20 16 44 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -72.83 393.47 -3.41 -76.24 By element: Atomic # 1 Polarization: 34.35 SS G_CDS: -1.11 Total: 33.24 kcal Atomic # 6 Polarization: 19.30 SS G_CDS: 7.23 Total: 26.53 kcal Atomic # 7 Polarization: -140.73 SS G_CDS: -9.17 Total: -149.91 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -1.25 Total: -27.37 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 16 Polarization: -4.43 SS G_CDS: -1.13 Total: -5.56 kcal Total: -72.83 -3.41 -76.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692127161.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.447 kcal (2) G-P(sol) polarization free energy of solvation -72.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds