Wall clock time and date at job start Sat Apr 11 2020 05:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47177 * 2 1 4 4 N 1.46503 * 109.46594 * 119.99604 * 2 1 3 5 5 C 1.35851 * 126.13641 * 299.97484 * 4 2 1 6 6 N 1.30166 * 109.00315 * 179.76767 * 5 4 2 7 7 C 1.35764 * 108.86976 * 0.41220 * 6 5 4 8 8 C 1.47322 * 126.23881 * 179.85754 * 7 6 5 9 9 O 1.21623 * 120.00050 * 179.68718 * 8 7 6 10 10 N 1.34777 * 119.99921 * 359.41345 * 8 7 6 11 11 C 1.46499 * 120.00195 * 180.27801 * 10 8 7 12 12 C 1.52990 * 109.47304 * 179.97438 * 11 10 8 13 13 N 1.46499 * 109.47304 * 179.97438 * 12 11 10 14 14 C 1.34777 * 120.00195 * 180.02562 * 13 12 11 15 15 O 1.21283 * 120.00231 * 359.97438 * 14 13 12 16 16 C 1.50708 * 119.99954 * 180.02562 * 14 13 12 17 17 S 1.81000 * 109.47054 * 179.97438 * 16 14 13 18 18 C 1.76192 * 99.99966 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00256 * 359.97438 * 18 17 16 20 20 C 1.38803 * 119.99961 * 180.02562 * 18 17 16 21 21 N 1.31632 * 119.99710 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 120.00181 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47103 * 90.00205 * 22 20 18 24 24 H 1.48494 * 109.47122 * 210.00277 * 22 20 18 25 25 H 1.48500 * 109.47063 * 330.00507 * 22 20 18 26 26 C 1.35376 * 126.13648 * 120.00532 * 4 2 1 27 27 H 1.09003 * 109.46630 * 60.00443 * 1 2 3 28 28 H 1.09000 * 109.47292 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47979 * 300.00545 * 1 2 3 30 30 H 1.08997 * 109.47523 * 239.99179 * 2 1 3 31 31 H 1.08994 * 109.47346 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.46979 * 299.99343 * 3 2 1 33 33 H 1.09000 * 109.47308 * 59.99671 * 3 2 1 34 34 H 1.08002 * 125.49397 * 0.02817 * 5 4 2 35 35 H 0.97000 * 119.99736 * 0.27073 * 10 8 7 36 36 H 1.08998 * 109.46795 * 299.99885 * 11 10 8 37 37 H 1.08997 * 109.47029 * 59.99499 * 11 10 8 38 38 H 1.09006 * 109.47037 * 299.99466 * 12 11 10 39 39 H 1.09002 * 109.47663 * 59.99467 * 12 11 10 40 40 H 0.97000 * 120.00069 * 359.97438 * 13 12 11 41 41 H 1.09000 * 109.46471 * 299.99005 * 16 14 13 42 42 H 1.08997 * 109.47273 * 59.99465 * 16 14 13 43 43 H 0.97004 * 119.99751 * 179.97438 * 21 20 18 44 44 H 1.08001 * 126.56093 * 359.97438 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 1.7684 -0.3364 2.4838 6 7 2.3594 -1.1814 3.2781 7 6 3.0172 -2.1025 2.5284 8 6 3.8150 -3.2313 3.0381 9 8 4.3542 -3.9950 2.2602 10 7 3.9518 -3.4143 4.3663 11 6 4.7502 -4.5332 4.8732 12 6 4.7439 -4.5124 6.4029 13 7 5.5417 -5.6317 6.9098 14 6 5.6785 -5.8148 8.2381 15 8 5.1414 -5.0527 9.0138 16 6 6.4998 -6.9659 8.7594 17 16 6.4922 -6.9414 10.5692 18 6 7.4958 -8.3517 10.8984 19 1 7.9009 -8.9290 10.0805 20 6 7.7648 -8.7214 12.2090 21 7 8.5141 -9.7753 12.4549 22 14 7.0635 -7.7233 13.6237 23 1 5.7360 -8.2693 14.0045 24 1 7.9827 -7.8005 14.7874 25 1 6.9142 -6.3067 13.2039 26 6 2.7997 -1.7957 1.2170 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3635 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 3.1299 1.4425 0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.1717 0.5074 2.7976 35 1 3.5218 -2.8051 4.9867 36 1 4.3243 -5.4725 4.5204 37 1 5.7748 -4.4409 4.5131 38 1 5.1701 -3.5731 6.7553 39 1 3.7193 -4.6044 6.7635 40 1 5.9710 -6.2415 6.2895 41 1 6.0738 -7.9051 8.4067 42 1 7.5244 -6.8736 8.3994 43 1 8.7025 -10.0334 13.3708 44 1 3.1786 -2.3320 0.3595 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001703108321.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:48 Heat of formation + Delta-G solvation = -20.670979 kcal Electronic energy + Delta-G solvation = -25016.874877 eV Core-core repulsion = 21096.395691 eV Total energy + Delta-G solvation = -3920.479186 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.73510 -39.71265 -39.13537 -36.66237 -35.90489 -33.92651 -32.41511 -31.75383 -30.61198 -29.87795 -28.14840 -27.98145 -25.59393 -24.16164 -23.68030 -22.40003 -21.05295 -20.68272 -20.05977 -18.19476 -17.82622 -16.93891 -16.61389 -16.28121 -16.01086 -15.88344 -15.55499 -15.19144 -14.99659 -14.92317 -14.58904 -14.39623 -14.13644 -13.94416 -13.68601 -13.62150 -13.26201 -13.08935 -13.00856 -12.77516 -12.42343 -12.22879 -12.06003 -11.98875 -11.69364 -11.24505 -10.98600 -10.73812 -10.59937 -10.37664 -10.30047 -9.83945 -9.55213 -9.39776 -9.04809 -9.00948 -8.96402 -8.47974 -6.89537 -6.26622 -3.98324 1.18430 1.98821 2.01109 2.61747 2.97328 2.97919 3.26341 3.35071 3.45277 3.52896 3.71182 3.75516 3.98873 4.04151 4.13814 4.23525 4.35471 4.46857 4.68437 4.71238 4.77345 4.79586 4.86771 4.88255 4.91524 5.03542 5.12533 5.20076 5.23124 5.30117 5.33532 5.59086 5.67867 5.76195 5.80386 5.97216 6.04099 6.13416 6.47261 6.50885 7.14659 7.44525 7.57998 7.96450 7.99555 8.44227 8.47578 9.19597 10.82623 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.041051 B = 0.001409 C = 0.001376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.920267 B =19869.025512 C =20349.256382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.124 3.876 3 C -0.165 4.165 4 N -0.452 5.452 5 C 0.190 3.810 6 N -0.462 5.462 7 C -0.065 4.065 8 C 0.607 3.393 9 O -0.545 6.545 10 N -0.713 5.713 11 C 0.110 3.890 12 C 0.111 3.889 13 N -0.734 5.734 14 C 0.533 3.467 15 O -0.518 6.518 16 C -0.124 4.124 17 S -0.142 6.142 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.881 5.881 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.037 3.963 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.104 0.896 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.209 0.791 35 H 0.412 0.588 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.402 0.598 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.271 0.729 44 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.206 22.835 -30.443 41.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.022 3.978 3 C -0.223 4.223 4 N -0.134 5.134 5 C -0.094 4.094 6 N -0.181 5.181 7 C -0.194 4.194 8 C 0.393 3.607 9 O -0.422 6.422 10 N -0.365 5.365 11 C -0.014 4.014 12 C -0.014 4.014 13 N -0.389 5.389 14 C 0.318 3.682 15 O -0.392 6.392 16 C -0.275 4.275 17 S 0.085 5.915 18 C -0.669 4.669 19 H 0.107 0.893 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.102 4.102 27 H 0.099 0.901 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.123 0.877 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.225 0.775 35 H 0.248 0.752 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.237 0.763 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.080 0.920 44 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -16.683 23.507 -28.785 40.736 hybrid contribution 0.426 -0.666 -1.064 1.326 sum -16.256 22.841 -29.849 40.950 Atomic orbital electron populations 1.22199 0.92669 1.03598 1.03789 1.21614 0.95880 0.94281 0.86037 1.22199 1.02436 0.93834 1.03790 1.45693 1.37541 1.21807 1.08379 1.25027 1.03829 1.01903 0.78665 1.70628 1.10847 1.04007 1.32621 1.20479 1.07831 1.00524 0.90601 1.16839 0.79190 0.82651 0.81988 1.90812 1.48710 1.46095 1.56630 1.45547 1.52768 1.31117 1.07071 1.21455 0.96703 0.90280 0.93004 1.21330 0.97101 0.91092 0.91855 1.45756 1.54459 1.31353 1.07381 1.20286 0.80576 0.85915 0.81374 1.90708 1.46902 1.45749 1.55843 1.23278 1.02387 0.98886 1.02902 1.84784 1.68777 1.40641 0.97332 1.22325 1.35504 1.12275 0.96830 0.89350 1.24709 0.93817 0.94468 0.98266 1.69943 1.36191 1.24530 1.21050 0.86734 0.79684 0.83178 0.82253 1.19209 1.19948 1.15920 1.22609 0.97325 0.90615 0.99664 0.90071 0.91469 0.91332 0.87742 0.91466 0.90065 0.91336 0.77496 0.75237 0.90530 0.90531 0.90797 0.90808 0.76334 0.88342 0.88296 0.91956 0.79565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.17 9.24 37.16 0.34 0.18 16 2 C 0.12 0.23 3.57 -67.93 -0.24 -0.02 16 3 C -0.16 -0.17 9.24 37.16 0.34 0.18 16 4 N -0.45 -2.30 2.59 -111.25 -0.29 -2.59 16 5 C 0.19 1.16 11.53 -89.91 -1.04 0.13 16 6 N -0.46 -4.36 11.01 -11.03 -0.12 -4.49 16 7 C -0.07 -0.66 6.98 -83.09 -0.58 -1.24 16 8 C 0.61 7.18 7.81 -12.57 -0.10 7.08 16 9 O -0.55 -7.82 16.88 5.26 0.09 -7.73 16 10 N -0.71 -7.30 5.55 -61.42 -0.34 -7.64 16 11 C 0.11 1.07 5.79 -4.05 -0.02 1.05 16 12 C 0.11 1.23 5.79 -4.05 -0.02 1.21 16 13 N -0.73 -9.31 5.56 -60.29 -0.33 -9.65 16 14 C 0.53 9.47 7.85 -10.98 -0.09 9.39 16 15 O -0.52 -11.20 15.86 5.55 0.09 -11.11 16 16 C -0.12 -2.40 6.16 36.01 0.22 -2.18 16 17 S -0.14 -3.62 18.55 -107.50 -1.99 -5.61 16 18 C -0.52 -15.14 10.04 30.94 0.31 -14.83 16 19 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 20 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 21 N -0.88 -26.75 13.97 55.49 0.78 -25.97 16 22 Si 0.86 21.94 27.74 -169.99 -4.72 17.22 16 23 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.24 -6.02 6.74 56.52 0.38 -5.63 16 26 C 0.04 0.28 11.22 -16.64 -0.19 0.09 16 27 H 0.08 -0.03 8.14 -51.93 -0.42 -0.45 16 28 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.07 0.06 7.94 -51.93 -0.41 -0.35 16 30 H 0.10 0.09 8.07 -51.93 -0.42 -0.33 16 31 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.08 -0.03 8.14 -51.93 -0.42 -0.45 16 33 H 0.07 0.06 7.94 -51.93 -0.41 -0.35 16 34 H 0.21 0.55 8.06 -52.49 -0.42 0.13 16 35 H 0.41 3.85 8.19 -40.82 -0.33 3.52 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.40 3.95 8.47 -40.82 -0.35 3.60 16 41 H 0.10 1.77 8.14 -51.92 -0.42 1.34 16 42 H 0.10 1.78 8.14 -51.92 -0.42 1.35 16 43 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 44 H 0.19 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 393.84 15.07 5.94 5.94 Total: -1.00 -38.36 393.84 -8.63 -47.00 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -6.57 Total: 0.88 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -1.15 Total: 3.76 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: -0.31 Total: -50.34 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: 0.18 Total: -18.84 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.72 Total: 17.22 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -38.36 -8.63 -47.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703108321.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.326 kcal (2) G-P(sol) polarization free energy of solvation -38.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds