Wall clock time and date at job start Sat Apr 11 2020 05:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47530 * 2 1 4 4 N 1.46897 * 109.47132 * 179.97438 * 3 2 1 5 5 C 1.46898 * 111.00253 * 59.16467 * 4 3 2 6 6 C 1.52997 * 109.47183 * 66.04039 * 5 4 3 7 7 N 1.46502 * 109.47235 * 180.02562 * 6 5 4 8 8 C 1.34770 * 119.99913 * 180.02562 * 7 6 5 9 9 O 1.21691 * 120.00316 * 0.02562 * 8 7 6 10 10 C 1.46689 * 120.00088 * 180.02562 * 8 7 6 11 11 C 1.35654 * 126.13141 * 180.02562 * 10 8 7 12 12 N 1.30941 * 114.19139 * 180.02562 * 11 10 8 13 13 C 1.29426 * 117.36481 * 0.02562 * 12 11 10 14 14 S 1.70956 * 110.39016 * 359.97438 * 13 12 11 15 15 C 1.46902 * 111.00090 * 295.20673 * 4 3 2 16 16 C 1.50696 * 109.47174 * 288.24496 * 15 4 3 17 17 O 1.21292 * 120.00065 * 354.29512 * 16 15 4 18 18 N 1.34780 * 120.00117 * 174.30237 * 16 15 4 19 19 C 1.37090 * 120.00327 * 179.97438 * 18 16 15 20 20 H 1.08002 * 120.00213 * 359.97438 * 19 18 16 21 21 C 1.38948 * 120.00303 * 179.97438 * 19 18 16 22 22 N 1.31418 * 119.99689 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00381 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47206 * 59.99691 * 23 21 19 25 25 H 1.48503 * 109.47551 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46944 * 299.99944 * 23 21 19 27 27 H 1.09000 * 109.47238 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46806 * 300.00229 * 1 2 3 29 29 H 1.08999 * 109.46879 * 59.99766 * 1 2 3 30 30 H 1.09003 * 109.47258 * 240.00017 * 2 1 3 31 31 H 1.08999 * 109.47386 * 120.00088 * 2 1 3 32 32 H 1.09000 * 109.46816 * 59.93308 * 3 2 1 33 33 H 1.08993 * 109.47257 * 299.93696 * 3 2 1 34 34 H 1.08996 * 109.46661 * 306.04417 * 5 4 3 35 35 H 1.08997 * 109.47358 * 186.04699 * 5 4 3 36 36 H 1.09005 * 109.46742 * 60.00043 * 6 5 4 37 37 H 1.08997 * 109.47512 * 300.00565 * 6 5 4 38 38 H 0.97001 * 119.99657 * 0.02562 * 7 6 5 39 39 H 1.08001 * 122.91033 * 0.02562 * 11 10 8 40 40 H 1.07999 * 124.80588 * 180.02562 * 13 12 11 41 41 H 1.09000 * 109.47072 * 48.24175 * 15 4 3 42 42 H 1.09000 * 109.47303 * 168.24206 * 15 4 3 43 43 H 0.97007 * 119.99767 * 359.97438 * 18 16 15 44 44 H 0.97005 * 119.99639 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5091 1.4424 0.0006 5 6 4.0360 0.7392 -1.1766 6 6 3.6725 1.5192 -2.4416 7 7 4.1975 0.8177 -3.6157 8 6 3.9975 1.3240 -4.8485 9 8 3.3811 2.3642 -4.9865 10 6 4.5226 0.6213 -6.0242 11 6 4.3951 1.0168 -7.3155 12 7 4.9556 0.2103 -8.1815 13 6 5.5493 -0.8418 -7.7170 14 16 5.4312 -0.8884 -6.0121 15 6 4.0350 0.8584 1.2418 16 6 3.7993 1.8119 2.3847 17 8 3.3424 2.9148 2.1702 18 7 4.0964 1.4392 3.6454 19 6 3.8826 2.3067 4.6852 20 1 3.4764 3.2890 4.4941 21 6 4.1883 1.9222 5.9849 22 7 4.6831 0.7271 6.2174 23 14 3.8963 3.1040 7.4018 24 1 2.4554 3.4581 7.4620 25 1 4.3016 2.4587 8.6764 26 1 4.7002 4.3350 7.1933 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6758 1.9566 0.8894 33 1 1.6778 1.9560 -0.8905 34 1 3.6017 -0.2591 -1.2280 35 1 5.1202 0.6601 -1.0974 36 1 4.1069 2.5177 -2.3901 37 1 2.5883 1.5984 -2.5208 38 1 4.6891 -0.0113 -3.5057 39 1 3.8762 1.9188 -7.6045 40 1 6.0493 -1.5846 -8.3208 41 1 3.5261 -0.0840 1.4440 42 1 5.1045 0.6780 1.1338 43 1 4.4616 0.5570 3.8171 44 1 4.8962 0.4586 7.1249 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714646142.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:57 Heat of formation + Delta-G solvation = -17.499496 kcal Electronic energy + Delta-G solvation = -26405.539070 eV Core-core repulsion = 22485.197410 eV Total energy + Delta-G solvation = -3920.341661 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.55186 -39.53741 -38.89290 -37.22130 -35.05338 -33.86551 -32.72748 -31.42558 -31.18751 -29.47907 -27.29909 -26.48292 -25.24319 -23.99189 -22.83053 -22.00639 -20.68012 -20.15692 -19.27182 -18.90085 -17.82016 -17.17222 -16.59316 -16.22483 -15.87289 -15.65375 -15.48921 -15.12292 -14.61115 -14.50957 -14.48108 -14.28470 -13.92156 -13.69986 -13.62768 -13.36623 -13.09338 -12.69760 -12.13669 -11.98409 -11.66863 -11.59336 -11.51889 -11.46533 -11.33545 -11.12033 -10.95543 -10.63944 -10.44063 -10.32387 -10.22682 -10.19949 -10.07525 -9.61216 -9.46778 -9.33857 -8.47800 -7.96339 -7.87478 -6.41224 -3.81796 -0.24797 0.66490 1.04586 2.02230 2.66135 2.81555 3.20430 3.25964 3.30533 3.75946 3.91885 3.99363 4.24437 4.40458 4.62384 4.73531 4.82741 4.91836 4.99821 5.07693 5.17402 5.25207 5.31609 5.39937 5.56541 5.60046 5.65876 5.73894 5.79743 5.87281 5.94365 5.98662 6.05762 6.17681 6.24659 6.31780 6.51979 6.97530 7.10185 7.18815 7.27466 7.55599 7.76239 8.06860 8.62864 9.19176 9.55369 10.07708 10.76502 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.021553 B = 0.001920 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.818292 B =14578.835904 C =14907.442148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.166 4.166 3 C 0.051 3.949 4 N -0.506 5.506 5 C 0.039 3.961 6 C 0.122 3.878 7 N -0.721 5.721 8 C 0.595 3.405 9 O -0.519 6.519 10 C -0.287 4.287 11 C 0.116 3.884 12 N -0.476 5.476 13 C 0.034 3.966 14 S 0.166 5.834 15 C 0.043 3.957 16 C 0.445 3.555 17 O -0.574 6.574 18 N -0.566 5.566 19 C -0.297 4.297 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.930 3.070 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.044 0.956 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.397 0.603 39 H 0.190 0.810 40 H 0.207 0.793 41 H 0.054 0.946 42 H 0.087 0.913 43 H 0.391 0.609 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.470 -10.406 -23.327 25.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.205 4.205 3 C -0.076 4.076 4 N -0.229 5.229 5 C -0.090 4.090 6 C -0.001 4.001 7 N -0.373 5.373 8 C 0.380 3.620 9 O -0.397 6.397 10 C -0.411 4.411 11 C -0.042 4.042 12 N -0.189 5.189 13 C -0.261 4.261 14 S 0.420 5.580 15 C -0.089 4.089 16 C 0.230 3.770 17 O -0.458 6.458 18 N -0.203 5.203 19 C -0.427 4.427 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.545 5.545 23 Si 0.757 3.243 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.231 0.769 39 H 0.207 0.793 40 H 0.223 0.777 41 H 0.072 0.928 42 H 0.106 0.894 43 H 0.224 0.776 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.322 -9.136 -23.201 24.970 hybrid contribution -0.197 -0.712 0.688 1.009 sum 1.125 -9.848 -22.513 24.598 Atomic orbital electron populations 1.21644 0.95386 1.01277 1.02037 1.22227 0.96953 0.99674 1.01687 1.22381 0.86318 0.94772 1.04174 1.61659 1.08048 1.53085 1.00092 1.22290 1.00748 0.95631 0.90328 1.21422 0.99820 0.96711 0.82151 1.45825 1.57821 1.27611 1.06027 1.16645 0.79674 0.84201 0.81520 1.90886 1.40616 1.22547 1.85612 1.25864 1.13125 1.02612 0.99499 1.22304 0.96325 0.99436 0.86105 1.66278 1.11187 1.03817 1.37572 1.28864 1.01464 0.99610 0.96178 1.84003 1.47280 1.18605 1.08132 1.21930 1.00599 0.96275 0.90047 1.19711 0.84990 0.88848 0.83486 1.90526 1.48952 1.22380 1.83894 1.41856 1.56791 1.16805 1.04865 1.19637 1.39890 0.98309 0.84871 0.87994 1.25247 0.97109 0.96878 0.98750 1.69606 1.43951 1.18738 1.22186 0.85928 0.78941 0.79844 0.79569 1.19945 1.21026 1.19909 0.93117 0.92310 0.92874 0.92308 0.91632 0.88678 0.90889 0.93840 0.90239 0.89737 0.90702 0.76913 0.79303 0.77678 0.92816 0.89448 0.77589 0.91887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 37.16 0.37 -1.30 16 2 C -0.17 -2.06 5.29 -26.73 -0.14 -2.20 16 3 C 0.05 0.77 4.80 -3.82 -0.02 0.75 16 4 N -0.51 -7.77 4.31 -236.08 -1.02 -8.78 16 5 C 0.04 0.43 4.81 -3.83 -0.02 0.41 16 6 C 0.12 1.38 5.60 -4.04 -0.02 1.36 16 7 N -0.72 -6.80 5.55 -61.62 -0.34 -7.14 16 8 C 0.60 6.71 7.79 -12.85 -0.10 6.61 16 9 O -0.52 -7.80 16.87 5.20 0.09 -7.71 16 10 C -0.29 -2.56 6.48 -37.10 -0.24 -2.80 16 11 C 0.12 1.05 11.09 -18.86 -0.21 0.85 16 12 N -0.48 -4.07 10.51 -15.38 -0.16 -4.23 16 13 C 0.03 0.19 12.22 51.75 0.63 0.82 16 14 S 0.17 0.89 22.35 -107.50 -2.40 -1.51 16 15 C 0.04 0.71 5.34 -4.98 -0.03 0.69 16 16 C 0.44 10.19 7.36 -10.99 -0.08 10.11 16 17 O -0.57 -15.27 14.70 5.55 0.08 -15.19 16 18 N -0.57 -14.03 5.29 -10.97 -0.06 -14.09 16 19 C -0.30 -8.19 9.68 -14.94 -0.14 -8.33 16 20 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.29 13.05 55.50 0.72 -23.57 16 23 Si 0.93 20.97 29.55 -169.99 -5.02 15.94 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.64 6.26 -51.93 -0.33 0.31 16 31 H 0.07 0.88 6.29 -51.93 -0.33 0.55 16 32 H 0.09 1.77 6.54 -51.93 -0.34 1.43 16 33 H 0.07 1.02 6.51 -51.93 -0.34 0.68 16 34 H 0.04 0.42 5.97 -51.93 -0.31 0.11 16 35 H 0.08 0.80 7.86 -51.93 -0.41 0.39 16 36 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.07 0.91 6.57 -51.93 -0.34 0.57 16 38 H 0.40 2.69 7.66 -40.82 -0.31 2.38 16 39 H 0.19 1.62 8.06 -52.49 -0.42 1.19 16 40 H 0.21 0.37 8.06 -52.49 -0.42 -0.06 16 41 H 0.05 0.82 5.97 -51.93 -0.31 0.51 16 42 H 0.09 1.31 7.81 -51.93 -0.41 0.90 16 43 H 0.39 9.25 7.90 -40.82 -0.32 8.93 16 44 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 378.86 15.07 5.71 5.71 Total: -1.00 -33.88 378.86 -8.29 -42.17 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -5.79 Total: 10.96 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: -0.10 Total: 7.44 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: -0.85 Total: -57.81 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: 0.17 Total: -22.90 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 0.89 SS G_CDS: -2.40 Total: -1.51 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.88 -8.29 -42.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714646142.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.667 kcal (2) G-P(sol) polarization free energy of solvation -33.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds