Wall clock time and date at job start Sat Apr 11 2020 05:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47530 * 2 1 4 4 N 1.46897 * 109.47132 * 179.97438 * 3 2 1 5 5 C 1.46898 * 111.00253 * 59.16467 * 4 3 2 6 6 C 1.52997 * 109.47183 * 66.04039 * 5 4 3 7 7 N 1.46502 * 109.47235 * 180.02562 * 6 5 4 8 8 C 1.34770 * 119.99913 * 180.02562 * 7 6 5 9 9 O 1.21691 * 120.00316 * 0.02562 * 8 7 6 10 10 C 1.46689 * 120.00088 * 180.02562 * 8 7 6 11 11 C 1.35654 * 126.13141 * 180.02562 * 10 8 7 12 12 N 1.30941 * 114.19139 * 180.02562 * 11 10 8 13 13 C 1.29426 * 117.36481 * 0.02562 * 12 11 10 14 14 S 1.70956 * 110.39016 * 359.97438 * 13 12 11 15 15 C 1.46902 * 111.00090 * 295.20673 * 4 3 2 16 16 C 1.50696 * 109.47174 * 288.24496 * 15 4 3 17 17 O 1.21292 * 120.00065 * 354.29512 * 16 15 4 18 18 N 1.34780 * 120.00117 * 174.30237 * 16 15 4 19 19 C 1.37090 * 120.00327 * 179.97438 * 18 16 15 20 20 H 1.08002 * 120.00213 * 359.97438 * 19 18 16 21 21 C 1.38948 * 120.00303 * 179.97438 * 19 18 16 22 22 N 1.31418 * 119.99689 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00381 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47206 * 59.99691 * 23 21 19 25 25 H 1.48503 * 109.47551 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46944 * 299.99944 * 23 21 19 27 27 H 1.09000 * 109.47238 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46806 * 300.00229 * 1 2 3 29 29 H 1.08999 * 109.46879 * 59.99766 * 1 2 3 30 30 H 1.09003 * 109.47258 * 240.00017 * 2 1 3 31 31 H 1.08999 * 109.47386 * 120.00088 * 2 1 3 32 32 H 1.09000 * 109.46816 * 59.93308 * 3 2 1 33 33 H 1.08993 * 109.47257 * 299.93696 * 3 2 1 34 34 H 1.08996 * 109.46661 * 306.04417 * 5 4 3 35 35 H 1.08997 * 109.47358 * 186.04699 * 5 4 3 36 36 H 1.09005 * 109.46742 * 60.00043 * 6 5 4 37 37 H 1.08997 * 109.47512 * 300.00565 * 6 5 4 38 38 H 0.97001 * 119.99657 * 0.02562 * 7 6 5 39 39 H 1.08001 * 122.91033 * 0.02562 * 11 10 8 40 40 H 1.07999 * 124.80588 * 180.02562 * 13 12 11 41 41 H 1.09000 * 109.47072 * 48.24175 * 15 4 3 42 42 H 1.09000 * 109.47303 * 168.24206 * 15 4 3 43 43 H 0.97007 * 119.99767 * 359.97438 * 18 16 15 44 44 H 0.97005 * 119.99639 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5091 1.4424 0.0006 5 6 4.0360 0.7392 -1.1766 6 6 3.6725 1.5192 -2.4416 7 7 4.1975 0.8177 -3.6157 8 6 3.9975 1.3240 -4.8485 9 8 3.3811 2.3642 -4.9865 10 6 4.5226 0.6213 -6.0242 11 6 4.3951 1.0168 -7.3155 12 7 4.9556 0.2103 -8.1815 13 6 5.5493 -0.8418 -7.7170 14 16 5.4312 -0.8884 -6.0121 15 6 4.0350 0.8584 1.2418 16 6 3.7993 1.8119 2.3847 17 8 3.3424 2.9148 2.1702 18 7 4.0964 1.4392 3.6454 19 6 3.8826 2.3067 4.6852 20 1 3.4764 3.2890 4.4941 21 6 4.1883 1.9222 5.9849 22 7 4.6831 0.7271 6.2174 23 14 3.8963 3.1040 7.4018 24 1 2.4554 3.4581 7.4620 25 1 4.3016 2.4587 8.6764 26 1 4.7002 4.3350 7.1933 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6758 1.9566 0.8894 33 1 1.6778 1.9560 -0.8905 34 1 3.6017 -0.2591 -1.2280 35 1 5.1202 0.6601 -1.0974 36 1 4.1069 2.5177 -2.3901 37 1 2.5883 1.5984 -2.5208 38 1 4.6891 -0.0113 -3.5057 39 1 3.8762 1.9188 -7.6045 40 1 6.0493 -1.5846 -8.3208 41 1 3.5261 -0.0840 1.4440 42 1 5.1045 0.6780 1.1338 43 1 4.4616 0.5570 3.8171 44 1 4.8962 0.4586 7.1249 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714646142.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:56 Heat of formation + Delta-G solvation = -44.716478 kcal Electronic energy + Delta-G solvation = -26406.719287 eV Core-core repulsion = 22485.197410 eV Total energy + Delta-G solvation = -3921.521878 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.28795 -40.60249 -40.07335 -38.71377 -36.08790 -35.78708 -33.77921 -33.21553 -32.13065 -30.50079 -28.57654 -27.17772 -26.74860 -25.33909 -23.80292 -22.84573 -21.73139 -21.03586 -20.60128 -19.92093 -19.70814 -17.88675 -17.71934 -17.38153 -17.18129 -16.74650 -16.54409 -16.36410 -15.96614 -15.68239 -15.27838 -15.15348 -15.03473 -14.91753 -14.87248 -14.52882 -14.26735 -14.14430 -13.48242 -13.21710 -13.04706 -12.73966 -12.65376 -12.63288 -12.50362 -12.41569 -12.36767 -12.15905 -12.08555 -11.53062 -11.50539 -11.31707 -10.79733 -10.69179 -10.28812 -10.24172 -10.06338 -9.96816 -9.11576 -8.44058 -5.91880 -0.80861 0.16358 0.53955 1.37662 1.40328 1.42005 1.52341 1.81266 2.05751 2.11077 2.30875 2.86962 3.23030 3.31505 3.45505 3.68647 3.82500 3.94743 3.99897 4.13432 4.16720 4.27982 4.33889 4.35060 4.44604 4.45889 4.59297 4.67618 4.79659 4.85497 4.96205 4.98048 5.00264 5.15496 5.18937 5.25124 5.40063 5.43311 5.88445 6.08602 6.17766 6.27561 6.54803 6.64862 6.96572 7.16967 7.61401 8.18404 8.73011 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.021553 B = 0.001920 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.818292 B =14578.835904 C =14907.442148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.157 4.157 3 C 0.056 3.944 4 N -0.531 5.531 5 C 0.046 3.954 6 C 0.130 3.870 7 N -0.706 5.706 8 C 0.595 3.405 9 O -0.569 6.569 10 C -0.320 4.320 11 C 0.111 3.889 12 N -0.507 5.507 13 C 0.042 3.958 14 S 0.236 5.764 15 C 0.057 3.943 16 C 0.442 3.558 17 O -0.617 6.617 18 N -0.576 5.576 19 C -0.330 4.330 20 H 0.076 0.924 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.989 3.011 24 H -0.274 1.274 25 H -0.270 1.270 26 H -0.274 1.274 27 H 0.067 0.933 28 H 0.040 0.960 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.413 0.587 39 H 0.180 0.820 40 H 0.245 0.755 41 H 0.077 0.923 42 H 0.114 0.886 43 H 0.396 0.604 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.722 -13.335 -24.256 27.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.196 4.196 3 C -0.072 4.072 4 N -0.254 5.254 5 C -0.081 4.081 6 C 0.006 3.994 7 N -0.358 5.358 8 C 0.381 3.619 9 O -0.449 6.449 10 C -0.444 4.444 11 C -0.048 4.048 12 N -0.221 5.221 13 C -0.252 4.252 14 S 0.490 5.510 15 C -0.074 4.074 16 C 0.229 3.771 17 O -0.502 6.502 18 N -0.214 5.214 19 C -0.460 4.460 20 H 0.094 0.906 21 C -0.213 4.213 22 N -0.561 5.561 23 Si 0.813 3.187 24 H -0.199 1.199 25 H -0.195 1.195 26 H -0.199 1.199 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.116 0.884 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.250 0.750 39 H 0.197 0.803 40 H 0.261 0.739 41 H 0.094 0.906 42 H 0.132 0.868 43 H 0.230 0.770 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.610 -12.140 -24.128 27.136 hybrid contribution -0.547 0.151 0.876 1.043 sum 2.063 -11.989 -23.253 26.243 Atomic orbital electron populations 1.21645 0.94834 1.02247 1.01583 1.22139 0.97437 0.97625 1.02382 1.22221 0.86532 0.96288 1.02146 1.61512 1.08245 1.54771 1.00883 1.22302 1.01820 0.96069 0.87951 1.21180 0.99112 0.95980 0.83091 1.45607 1.57403 1.27854 1.04978 1.16970 0.78880 0.83665 0.82405 1.90854 1.42897 1.24784 1.86383 1.25669 1.15268 1.05134 0.98334 1.22306 0.96346 0.99563 0.86586 1.66328 1.12762 1.05048 1.37955 1.29587 0.99502 0.98930 0.97147 1.83703 1.44977 1.15109 1.07185 1.21774 1.02524 0.94925 0.88159 1.20865 0.82746 0.89197 0.84301 1.90500 1.50283 1.24747 1.84689 1.41915 1.57531 1.16701 1.05233 1.19571 1.41653 0.98219 0.86543 0.90601 1.25972 0.96421 0.98456 1.00416 1.69661 1.43878 1.19591 1.22974 0.85043 0.78668 0.77923 0.77031 1.19896 1.19466 1.19895 0.91367 0.94104 0.92094 0.89766 0.92438 0.93223 0.90431 0.91160 0.88410 0.92205 0.91682 0.75025 0.80294 0.73916 0.90567 0.86816 0.77025 0.91391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 9.91 71.98 0.71 -2.44 16 2 C -0.16 -3.62 5.29 30.59 0.16 -3.46 16 3 C 0.06 1.68 4.80 86.30 0.41 2.10 16 4 N -0.53 -15.78 4.31 -900.83 -3.88 -19.66 16 5 C 0.05 0.91 4.81 86.30 0.41 1.32 16 6 C 0.13 2.84 5.60 86.38 0.48 3.32 16 7 N -0.71 -12.18 5.55 -467.08 -2.59 -14.77 16 8 C 0.59 13.25 7.79 86.45 0.67 13.92 16 9 O -0.57 -17.80 16.87 -4.32 -0.07 -17.87 16 10 C -0.32 -5.38 6.48 23.88 0.15 -5.23 16 11 C 0.11 2.00 11.09 84.23 0.93 2.94 16 12 N -0.51 -7.96 10.51 -202.57 -2.13 -10.08 16 13 C 0.04 0.33 12.22 130.60 1.60 1.93 16 14 S 0.24 1.76 22.35 -56.49 -1.26 0.49 16 15 C 0.06 1.83 5.34 85.56 0.46 2.29 16 16 C 0.44 20.61 7.36 87.66 0.65 21.25 16 17 O -0.62 -34.15 14.70 -3.07 -0.05 -34.20 16 18 N -0.58 -29.08 5.29 -306.99 -1.62 -30.70 16 19 C -0.33 -18.69 9.68 84.04 0.81 -17.87 16 20 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 21 C -0.01 -0.69 5.50 84.92 0.47 -0.23 16 22 N -0.92 -49.16 13.05 21.66 0.28 -48.88 16 23 Si 0.99 43.07 29.55 68.60 2.03 45.09 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 25 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 26 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 27 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.08 1.53 6.26 -2.39 -0.01 1.51 16 31 H 0.06 1.43 6.29 -2.39 -0.02 1.41 16 32 H 0.05 1.94 6.54 -2.39 -0.02 1.93 16 33 H 0.08 2.21 6.51 -2.39 -0.02 2.19 16 34 H 0.07 1.05 5.97 -2.39 -0.01 1.04 16 35 H 0.10 1.61 7.86 -2.39 -0.02 1.59 16 36 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 37 H 0.06 1.56 6.57 -2.39 -0.02 1.55 16 38 H 0.41 4.33 7.66 -92.71 -0.71 3.62 16 39 H 0.18 3.34 8.06 -2.91 -0.02 3.32 16 40 H 0.24 -0.23 8.06 -2.91 -0.02 -0.25 16 41 H 0.08 2.14 5.97 -2.39 -0.01 2.12 16 42 H 0.11 3.08 7.81 -2.39 -0.02 3.06 16 43 H 0.40 18.82 7.90 -92.70 -0.73 18.09 16 44 H 0.28 13.90 8.31 -92.70 -0.77 13.13 16 Total: -1.00 -77.67 378.86 -1.75 -79.42 By element: Atomic # 1 Polarization: 31.70 SS G_CDS: -0.38 Total: 31.32 kcal Atomic # 6 Polarization: 11.90 SS G_CDS: 7.93 Total: 19.83 kcal Atomic # 7 Polarization: -114.15 SS G_CDS: -9.94 Total: -124.09 kcal Atomic # 8 Polarization: -51.95 SS G_CDS: -0.12 Total: -52.07 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -1.26 Total: 0.49 kcal Total: -77.67 -1.75 -79.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714646142.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.701 kcal (2) G-P(sol) polarization free energy of solvation -77.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds