Wall clock time and date at job start Sat Apr 11 2020 06:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47306 * 2 1 4 4 H 1.09002 * 109.46892 * 305.00508 * 3 2 1 5 5 C 1.52996 * 109.47530 * 184.99714 * 3 2 1 6 6 N 1.46498 * 109.47059 * 184.99929 * 5 3 2 7 7 C 1.34777 * 119.99828 * 179.72339 * 6 5 3 8 8 O 1.21283 * 120.00222 * 0.28168 * 7 6 5 9 9 C 1.50703 * 120.00290 * 180.27728 * 7 6 5 10 10 S 1.81000 * 109.47389 * 180.02562 * 9 7 6 11 11 C 1.76198 * 99.99715 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00516 * 0.02562 * 11 10 9 13 13 C 1.38803 * 119.99710 * 179.97438 * 11 10 9 14 14 N 1.31626 * 120.00053 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 120.00174 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47356 * 89.99148 * 15 13 11 17 17 H 1.48497 * 109.47342 * 209.99750 * 15 13 11 18 18 H 1.48505 * 109.46847 * 329.99403 * 15 13 11 19 19 N 1.46506 * 109.46609 * 64.99913 * 3 2 1 20 20 C 1.34782 * 119.99726 * 274.99704 * 19 3 2 21 21 O 1.21604 * 119.99928 * 0.02562 * 20 19 3 22 22 C 1.47408 * 119.99553 * 180.02562 * 20 19 3 23 23 N 1.31613 * 125.86494 * 359.69589 * 22 20 19 24 24 C 1.33105 * 109.09284 * 179.83305 * 23 22 20 25 25 C 1.50704 * 125.82534 * 180.13454 * 24 23 22 26 26 C 1.35562 * 108.35122 * 0.43460 * 24 23 22 27 27 N 1.35398 * 107.16059 * 359.73722 * 26 24 23 28 28 H 0.96998 * 126.44569 * 179.97438 * 27 26 24 29 29 H 1.09001 * 109.46772 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47382 * 299.99589 * 1 2 3 31 31 H 1.09003 * 109.47243 * 60.00250 * 1 2 3 32 32 H 1.09001 * 109.47619 * 240.00089 * 2 1 3 33 33 H 1.09003 * 109.47243 * 119.99750 * 2 1 3 34 34 H 1.09004 * 109.47066 * 65.00196 * 5 3 2 35 35 H 1.08994 * 109.46974 * 305.00344 * 5 3 2 36 36 H 0.97001 * 120.00384 * 0.02562 * 6 5 3 37 37 H 1.08998 * 109.46954 * 300.00581 * 9 7 6 38 38 H 1.09002 * 109.46946 * 59.99717 * 9 7 6 39 39 H 0.97000 * 120.00636 * 180.02562 * 14 13 11 40 40 H 0.97000 * 120.00390 * 95.00648 * 19 3 2 41 41 H 1.08994 * 109.47164 * 270.34765 * 25 24 23 42 42 H 1.08999 * 109.46627 * 30.34716 * 25 24 23 43 43 H 1.08994 * 109.47008 * 150.34079 * 25 24 23 44 44 H 1.07994 * 126.41703 * 179.78085 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1256 6 7 4.0629 2.8169 -0.0059 7 6 5.3860 3.0624 -0.0806 8 8 6.1639 2.1478 -0.2521 9 6 5.8991 4.4735 0.0488 10 16 7.7034 4.4751 -0.0940 11 6 8.0232 6.1982 0.0876 12 1 7.2044 6.8868 0.2356 13 6 9.3275 6.6706 0.0415 14 7 9.5665 7.9578 0.1776 15 14 10.7438 5.4797 -0.2138 16 1 11.0096 5.3308 -1.6672 17 1 11.9587 6.0034 0.4605 18 1 10.3889 4.1578 0.3624 19 7 1.6524 2.0974 1.2519 20 6 0.4350 2.6644 1.3669 21 8 -0.3417 2.6319 0.4318 22 6 0.0452 3.3238 2.6264 23 7 0.7888 3.4213 3.7080 24 6 0.1120 4.0837 4.6433 25 6 0.6101 4.4104 6.0276 26 6 -1.1043 4.4085 4.1406 27 7 -1.1526 3.9338 2.8734 28 1 -1.8974 4.0117 2.2569 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8499 1.0378 -1.0960 35 1 3.9953 0.8312 0.6659 36 1 3.4409 3.5484 0.1316 37 1 5.4717 5.0895 -0.7424 38 1 5.6107 4.8774 1.0193 39 1 10.4780 8.2881 0.1451 40 1 2.2718 2.1232 1.9979 41 1 0.3493 3.6000 6.7083 42 1 1.6931 4.5314 6.0048 43 1 0.1483 5.3361 6.3708 44 1 -1.8877 4.9458 4.6543 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721451715.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:10 Heat of formation + Delta-G solvation = -26.893896 kcal Electronic energy + Delta-G solvation = -26546.357709 eV Core-core repulsion = 22625.608677 eV Total energy + Delta-G solvation = -3920.749032 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.67141 -40.30852 -39.14514 -36.78696 -33.99847 -33.62178 -33.01356 -32.42646 -31.35312 -30.17494 -28.16892 -27.31944 -25.60545 -24.29121 -23.45120 -21.48642 -20.91294 -20.62139 -20.37372 -19.07920 -17.88374 -17.06472 -16.80760 -16.43805 -16.19961 -15.82096 -15.25526 -15.17575 -14.94614 -14.57524 -14.49469 -13.86559 -13.75558 -13.54676 -13.48695 -13.41942 -13.08618 -13.04646 -12.78261 -12.56174 -12.47094 -11.92314 -11.85247 -11.47803 -11.25130 -11.18220 -10.99822 -10.68825 -10.60812 -10.59237 -10.51844 -9.85220 -9.60244 -9.46293 -9.05582 -8.97913 -8.83072 -8.49203 -6.90502 -6.27658 -3.99318 0.94550 2.12959 2.14587 2.75004 2.95381 3.01275 3.07377 3.30183 3.34799 3.51548 3.64833 3.82978 4.28184 4.34270 4.48923 4.63054 4.66132 4.75453 4.77047 4.81473 5.06854 5.11410 5.16946 5.28211 5.36529 5.38754 5.43767 5.48658 5.53191 5.64614 5.67692 5.69576 5.78029 5.79231 6.02564 6.03524 6.12305 6.20333 6.45249 6.69654 6.97192 7.42062 7.55348 7.72487 7.95429 8.43186 8.45928 9.18468 10.81656 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011293 B = 0.002592 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.841893 B =10799.074914 C =12650.182830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.133 4.133 3 C 0.135 3.865 4 H 0.100 0.900 5 C 0.113 3.887 6 N -0.737 5.737 7 C 0.532 3.468 8 O -0.518 6.518 9 C -0.125 4.125 10 S -0.141 6.141 11 C -0.521 4.521 12 H 0.088 0.912 13 C 0.095 3.905 14 N -0.881 5.881 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.235 1.235 19 N -0.700 5.700 20 C 0.611 3.389 21 O -0.535 6.535 22 C 0.143 3.857 23 N -0.436 5.436 24 C 0.002 3.998 25 C -0.071 4.071 26 C -0.022 4.022 27 N -0.524 5.524 28 H 0.430 0.570 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.400 0.600 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.271 0.729 40 H 0.416 0.584 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.061 -11.617 7.232 29.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.172 4.172 3 C 0.031 3.969 4 H 0.118 0.882 5 C -0.011 4.011 6 N -0.392 5.392 7 C 0.318 3.682 8 O -0.392 6.392 9 C -0.275 4.275 10 S 0.086 5.914 11 C -0.669 4.669 12 H 0.106 0.894 13 C -0.113 4.113 14 N -0.518 5.518 15 Si 0.682 3.318 16 H -0.192 1.192 17 H -0.200 1.200 18 H -0.159 1.159 19 N -0.352 5.352 20 C 0.395 3.605 21 O -0.411 6.411 22 C -0.118 4.118 23 N -0.160 5.160 24 C -0.132 4.132 25 C -0.129 4.129 26 C -0.162 4.162 27 N -0.126 5.126 28 H 0.269 0.731 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.235 0.765 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.253 0.747 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -24.343 -13.380 6.296 28.483 hybrid contribution -1.470 1.687 0.221 2.249 sum -25.814 -11.692 6.517 29.078 Atomic orbital electron populations 1.21789 0.94645 1.00854 1.02840 1.21907 0.97168 0.94861 1.03224 1.21456 0.93976 0.94511 0.86973 0.88188 1.21609 0.91134 0.84732 1.03655 1.45940 1.07768 1.08960 1.76571 1.20274 0.81457 0.91025 0.75403 1.90705 1.55461 1.46090 1.46981 1.23280 1.02983 0.95458 1.05794 1.84762 0.97889 1.12998 1.95785 1.22321 0.97206 0.89902 1.57431 0.89407 1.24716 0.98275 0.95049 0.93289 1.69938 1.21414 1.12591 1.47812 0.86730 0.82105 0.83135 0.79845 1.19229 1.19959 1.15884 1.45746 1.15846 1.56156 1.17459 1.16379 0.82436 0.77741 0.83969 1.90865 1.51432 1.59936 1.38882 1.22585 0.85485 1.06694 0.97070 1.70125 1.30538 1.16374 0.98970 1.20951 0.91889 1.02614 0.97725 1.20097 1.02339 1.01392 0.89024 1.22771 1.01635 1.05914 0.85837 1.42868 1.15261 1.41212 1.13218 0.73053 0.93265 0.92823 0.92002 0.90223 0.91155 0.89619 0.90617 0.76540 0.88543 0.88401 0.91949 0.74729 0.91134 0.90572 0.90980 0.79615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.51 37.15 0.32 -0.90 16 2 C -0.13 -0.98 5.61 -26.73 -0.15 -1.13 16 3 C 0.14 1.13 2.42 -67.93 -0.16 0.96 16 4 H 0.10 0.91 7.58 -51.93 -0.39 0.52 16 5 C 0.11 1.13 5.23 -4.04 -0.02 1.11 16 6 N -0.74 -9.07 5.39 -60.30 -0.32 -9.40 16 7 C 0.53 9.26 7.85 -10.98 -0.09 9.18 16 8 O -0.52 -10.88 15.86 5.55 0.09 -10.80 16 9 C -0.12 -2.42 6.16 36.01 0.22 -2.19 16 10 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 11 C -0.52 -15.09 10.04 30.94 0.31 -14.78 16 12 H 0.09 2.66 8.03 -52.49 -0.42 2.23 16 13 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 14 N -0.88 -26.72 13.97 55.49 0.78 -25.95 16 15 Si 0.86 21.86 27.74 -169.99 -4.72 17.14 16 16 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 17 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.23 -5.97 6.74 56.52 0.38 -5.58 16 19 N -0.70 -6.18 4.47 -54.88 -0.25 -6.42 16 20 C 0.61 6.18 6.38 -12.52 -0.08 6.10 16 21 O -0.54 -6.20 14.23 5.27 0.08 -6.12 16 22 C 0.14 1.42 7.95 -154.52 -1.23 0.19 16 23 N -0.44 -4.71 10.89 -7.49 -0.08 -4.79 16 24 C 0.00 0.02 7.07 -82.99 -0.59 -0.57 16 25 C -0.07 -0.46 10.42 36.01 0.38 -0.08 16 26 C -0.02 -0.15 11.91 -16.93 -0.20 -0.35 16 27 N -0.52 -3.86 6.14 -10.78 -0.07 -3.92 16 28 H 0.43 2.23 8.96 -40.82 -0.37 1.86 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.52 5.64 -51.93 -0.29 0.23 16 31 H 0.06 0.57 7.84 -51.93 -0.41 0.16 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.40 4.28 8.14 -40.82 -0.33 3.95 16 37 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 38 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16 39 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 40 H 0.42 3.71 8.28 -40.82 -0.34 3.38 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.19 0.49 8.06 -52.49 -0.42 0.07 16 LS Contribution 385.50 15.07 5.81 5.81 Total: -1.00 -36.27 385.50 -8.43 -44.70 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -6.36 Total: 5.06 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -1.39 Total: 0.26 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: 0.06 Total: -50.49 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: 0.16 Total: -16.92 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.72 Total: 17.14 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.27 -8.43 -44.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721451715.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.805 kcal (2) G-P(sol) polarization free energy of solvation -36.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds