Wall clock time and date at job start Sat Apr 11 2020 06:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47306 * 2 1 4 4 H 1.09002 * 109.46892 * 305.00508 * 3 2 1 5 5 C 1.52996 * 109.47530 * 184.99714 * 3 2 1 6 6 N 1.46498 * 109.47059 * 184.99929 * 5 3 2 7 7 C 1.34777 * 119.99828 * 179.72339 * 6 5 3 8 8 O 1.21283 * 120.00222 * 0.28168 * 7 6 5 9 9 C 1.50703 * 120.00290 * 180.27728 * 7 6 5 10 10 S 1.81000 * 109.47389 * 180.02562 * 9 7 6 11 11 C 1.76198 * 99.99715 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00516 * 0.02562 * 11 10 9 13 13 C 1.38803 * 119.99710 * 179.97438 * 11 10 9 14 14 N 1.31626 * 120.00053 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 120.00174 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47356 * 89.99148 * 15 13 11 17 17 H 1.48497 * 109.47342 * 209.99750 * 15 13 11 18 18 H 1.48505 * 109.46847 * 329.99403 * 15 13 11 19 19 N 1.46506 * 109.46609 * 64.99913 * 3 2 1 20 20 C 1.34782 * 119.99726 * 274.99704 * 19 3 2 21 21 O 1.21604 * 119.99928 * 0.02562 * 20 19 3 22 22 C 1.47408 * 119.99553 * 180.02562 * 20 19 3 23 23 N 1.31613 * 125.86494 * 359.69589 * 22 20 19 24 24 C 1.33105 * 109.09284 * 179.83305 * 23 22 20 25 25 C 1.50704 * 125.82534 * 180.13454 * 24 23 22 26 26 C 1.35562 * 108.35122 * 0.43460 * 24 23 22 27 27 N 1.35398 * 107.16059 * 359.73722 * 26 24 23 28 28 H 0.96998 * 126.44569 * 179.97438 * 27 26 24 29 29 H 1.09001 * 109.46772 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47382 * 299.99589 * 1 2 3 31 31 H 1.09003 * 109.47243 * 60.00250 * 1 2 3 32 32 H 1.09001 * 109.47619 * 240.00089 * 2 1 3 33 33 H 1.09003 * 109.47243 * 119.99750 * 2 1 3 34 34 H 1.09004 * 109.47066 * 65.00196 * 5 3 2 35 35 H 1.08994 * 109.46974 * 305.00344 * 5 3 2 36 36 H 0.97001 * 120.00384 * 0.02562 * 6 5 3 37 37 H 1.08998 * 109.46954 * 300.00581 * 9 7 6 38 38 H 1.09002 * 109.46946 * 59.99717 * 9 7 6 39 39 H 0.97000 * 120.00636 * 180.02562 * 14 13 11 40 40 H 0.97000 * 120.00390 * 95.00648 * 19 3 2 41 41 H 1.08994 * 109.47164 * 270.34765 * 25 24 23 42 42 H 1.08999 * 109.46627 * 30.34716 * 25 24 23 43 43 H 1.08994 * 109.47008 * 150.34079 * 25 24 23 44 44 H 1.07994 * 126.41703 * 179.78085 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1256 6 7 4.0629 2.8169 -0.0059 7 6 5.3860 3.0624 -0.0806 8 8 6.1639 2.1478 -0.2521 9 6 5.8991 4.4735 0.0488 10 16 7.7034 4.4751 -0.0940 11 6 8.0232 6.1982 0.0876 12 1 7.2044 6.8868 0.2356 13 6 9.3275 6.6706 0.0415 14 7 9.5665 7.9578 0.1776 15 14 10.7438 5.4797 -0.2138 16 1 11.0096 5.3308 -1.6672 17 1 11.9587 6.0034 0.4605 18 1 10.3889 4.1578 0.3624 19 7 1.6524 2.0974 1.2519 20 6 0.4350 2.6644 1.3669 21 8 -0.3417 2.6319 0.4318 22 6 0.0452 3.3238 2.6264 23 7 0.7888 3.4213 3.7080 24 6 0.1120 4.0837 4.6433 25 6 0.6101 4.4104 6.0276 26 6 -1.1043 4.4085 4.1406 27 7 -1.1526 3.9338 2.8734 28 1 -1.8974 4.0117 2.2569 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8499 1.0378 -1.0960 35 1 3.9953 0.8312 0.6659 36 1 3.4409 3.5484 0.1316 37 1 5.4717 5.0895 -0.7424 38 1 5.6107 4.8774 1.0193 39 1 10.4780 8.2881 0.1451 40 1 2.2718 2.1232 1.9979 41 1 0.3493 3.6000 6.7083 42 1 1.6931 4.5314 6.0048 43 1 0.1483 5.3361 6.3708 44 1 -1.8877 4.9458 4.6543 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001721451715.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:09 Heat of formation + Delta-G solvation = -54.467019 kcal Electronic energy + Delta-G solvation = -26547.553370 eV Core-core repulsion = 22625.608677 eV Total energy + Delta-G solvation = -3921.944693 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.28557 -41.17661 -40.37664 -37.67321 -35.08453 -34.67020 -34.26869 -33.68929 -31.98791 -31.48488 -29.17627 -27.97680 -27.81311 -25.01652 -24.24098 -22.23316 -21.67128 -21.58156 -21.21931 -20.01720 -19.60083 -17.95863 -17.80277 -17.55578 -17.14180 -17.01587 -16.81538 -16.48904 -15.95061 -15.65213 -15.27539 -15.07201 -14.94270 -14.76592 -14.62276 -14.22457 -14.08552 -13.98605 -13.59940 -13.53119 -13.34497 -13.08676 -13.05897 -12.97435 -12.70974 -12.54008 -12.19328 -11.86006 -11.84829 -11.41225 -11.29594 -11.17080 -11.16886 -11.04845 -10.54498 -10.25834 -10.18098 -9.40963 -8.99249 -8.51448 -6.22296 0.29103 0.98529 1.32224 1.46191 1.49414 1.52596 1.55239 1.56879 2.17674 2.25888 2.30599 2.49037 2.71172 2.86823 3.17484 3.49637 3.80661 3.93237 3.98735 4.07254 4.12221 4.20873 4.37722 4.38983 4.46035 4.50379 4.64120 4.76427 4.84745 4.91173 4.94786 4.98306 5.03754 5.12041 5.13125 5.31214 5.36878 5.44871 5.64699 5.70621 6.11336 6.15572 6.26728 6.36899 6.76861 6.93491 7.00457 7.13507 8.61199 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011293 B = 0.002592 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.841893 B =10799.074914 C =12650.182830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.145 3.855 4 H 0.096 0.904 5 C 0.115 3.885 6 N -0.714 5.714 7 C 0.539 3.461 8 O -0.556 6.556 9 C -0.114 4.114 10 S -0.169 6.169 11 C -0.531 4.531 12 H 0.060 0.940 13 C 0.045 3.955 14 N -0.918 5.918 15 Si 0.916 3.084 16 H -0.262 1.262 17 H -0.259 1.259 18 H -0.235 1.235 19 N -0.696 5.696 20 C 0.612 3.388 21 O -0.555 6.555 22 C 0.113 3.887 23 N -0.461 5.461 24 C -0.031 4.031 25 C -0.067 4.067 26 C 0.002 3.998 27 N -0.517 5.517 28 H 0.439 0.561 29 H 0.059 0.941 30 H 0.038 0.962 31 H 0.051 0.949 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.411 0.589 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.277 0.723 40 H 0.416 0.584 41 H 0.077 0.923 42 H 0.058 0.942 43 H 0.094 0.906 44 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.506 -12.645 7.664 31.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.041 3.959 4 H 0.114 0.886 5 C -0.008 4.008 6 N -0.368 5.368 7 C 0.325 3.675 8 O -0.434 6.434 9 C -0.265 4.265 10 S 0.058 5.942 11 C -0.678 4.678 12 H 0.078 0.922 13 C -0.161 4.161 14 N -0.556 5.556 15 Si 0.738 3.262 16 H -0.186 1.186 17 H -0.183 1.183 18 H -0.159 1.159 19 N -0.347 5.347 20 C 0.397 3.603 21 O -0.432 6.432 22 C -0.147 4.147 23 N -0.186 5.186 24 C -0.165 4.165 25 C -0.125 4.125 26 C -0.138 4.138 27 N -0.120 5.120 28 H 0.281 0.719 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.113 0.887 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.097 0.903 36 H 0.247 0.753 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.087 0.913 40 H 0.253 0.747 41 H 0.096 0.904 42 H 0.077 0.923 43 H 0.112 0.888 44 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -25.836 -14.406 6.722 30.335 hybrid contribution -1.243 2.045 0.154 2.398 sum -27.080 -12.361 6.876 30.552 Atomic orbital electron populations 1.21718 0.95237 1.01098 1.01562 1.21895 0.96452 0.94105 1.04286 1.21376 0.92578 0.95255 0.86671 0.88560 1.21762 0.92018 0.82968 1.04100 1.45717 1.06075 1.10615 1.74346 1.19837 0.82738 0.89464 0.75504 1.90698 1.56737 1.46630 1.49324 1.23278 0.98443 0.97700 1.07092 1.84631 1.03610 1.10038 1.95926 1.22473 0.96712 0.91616 1.57020 0.92210 1.25593 1.00819 0.96636 0.93019 1.70017 1.22470 1.14281 1.48865 0.85846 0.79366 0.80959 0.80077 1.18648 1.18337 1.15857 1.45726 1.15594 1.55919 1.17504 1.16445 0.82419 0.77520 0.83947 1.90848 1.51958 1.60874 1.39557 1.22517 0.86669 1.08437 0.97033 1.70058 1.31661 1.17111 0.99732 1.21478 0.93040 1.03480 0.98477 1.20136 1.01373 1.02765 0.88240 1.23430 1.01589 1.03817 0.85006 1.42941 1.14841 1.40409 1.13764 0.71925 0.92233 0.94337 0.92996 0.88675 0.90580 0.89076 0.90318 0.75310 0.87202 0.87145 0.91345 0.74724 0.90428 0.92265 0.88750 0.75514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 8.51 71.98 0.61 -1.56 16 2 C -0.13 -1.68 5.61 30.59 0.17 -1.51 16 3 C 0.15 2.21 2.42 44.99 0.11 2.32 16 4 H 0.10 1.61 7.58 -2.39 -0.02 1.59 16 5 C 0.12 2.10 5.23 86.38 0.45 2.55 16 6 N -0.71 -16.41 5.39 -463.07 -2.49 -18.90 16 7 C 0.54 18.09 7.85 87.66 0.69 18.77 16 8 O -0.56 -22.83 15.86 -3.04 -0.05 -22.88 16 9 C -0.11 -4.34 6.16 71.24 0.44 -3.90 16 10 S -0.17 -8.52 18.55 -56.49 -1.05 -9.57 16 11 C -0.53 -31.15 10.04 67.96 0.68 -30.47 16 12 H 0.06 3.72 8.03 -2.91 -0.02 3.70 16 13 C 0.04 2.64 5.50 84.86 0.47 3.10 16 14 N -0.92 -56.35 13.97 21.65 0.30 -56.05 16 15 Si 0.92 45.09 27.74 68.60 1.90 47.00 16 16 H -0.26 -12.56 7.11 99.48 0.71 -11.85 16 17 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 18 H -0.23 -11.48 6.74 99.48 0.67 -10.81 16 19 N -0.70 -11.69 4.47 -445.80 -1.99 -13.68 16 20 C 0.61 12.07 6.38 86.66 0.55 12.62 16 21 O -0.55 -12.59 14.23 -4.04 -0.06 -12.64 16 22 C 0.11 2.19 7.95 136.28 1.08 3.27 16 23 N -0.46 -9.74 10.89 -177.63 -1.94 -11.68 16 24 C -0.03 -0.50 7.07 41.75 0.30 -0.21 16 25 C -0.07 -0.78 10.42 71.24 0.74 -0.04 16 26 C 0.00 0.02 11.91 83.52 0.99 1.01 16 27 N -0.52 -6.84 6.14 -188.02 -1.16 -7.99 16 28 H 0.44 3.89 8.96 -92.71 -0.83 3.06 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.04 0.72 5.64 -2.39 -0.01 0.71 16 31 H 0.05 0.91 7.84 -2.39 -0.02 0.90 16 32 H 0.09 0.98 8.14 -2.39 -0.02 0.97 16 33 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 35 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.41 8.07 8.14 -92.71 -0.75 7.31 16 37 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 38 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 39 H 0.28 15.69 8.31 -92.71 -0.77 14.92 16 40 H 0.42 7.12 8.28 -92.71 -0.77 6.35 16 41 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.23 0.27 8.06 -2.91 -0.02 0.25 16 Total: -1.00 -79.25 385.50 -0.57 -79.82 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: -1.33 Total: 20.61 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 7.29 Total: 5.97 kcal Atomic # 7 Polarization: -101.02 SS G_CDS: -7.27 Total: -108.30 kcal Atomic # 8 Polarization: -35.42 SS G_CDS: -0.11 Total: -35.53 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.90 Total: 47.00 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.05 Total: -9.57 kcal Total: -79.25 -0.57 -79.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721451715.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.351 kcal (2) G-P(sol) polarization free energy of solvation -79.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds