Wall clock time and date at job start Sat Apr 11 2020 06:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47192 * 2 1 4 4 H 1.08995 * 109.47089 * 304.99802 * 3 2 1 5 5 C 1.52997 * 109.47030 * 184.99742 * 3 2 1 6 6 N 1.46504 * 109.47259 * 184.99880 * 5 3 2 7 7 C 1.34771 * 120.00342 * 179.97438 * 6 5 3 8 8 O 1.21284 * 120.00212 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.00125 * 179.97438 * 7 6 5 10 10 S 1.81002 * 109.47087 * 180.02562 * 9 7 6 11 11 C 1.76198 * 100.00078 * 180.02562 * 10 9 7 12 12 H 1.08001 * 119.99796 * 0.02562 * 11 10 9 13 13 C 1.38799 * 120.00261 * 179.97438 * 11 10 9 14 14 N 1.31628 * 119.99823 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00233 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47341 * 89.99706 * 15 13 11 17 17 H 1.48496 * 109.47227 * 210.00023 * 15 13 11 18 18 H 1.48507 * 109.47201 * 329.99865 * 15 13 11 19 19 N 1.46500 * 109.47431 * 64.99900 * 3 2 1 20 20 C 1.34781 * 119.99790 * 275.00101 * 19 3 2 21 21 O 1.21281 * 119.99862 * 0.02562 * 20 19 3 22 22 C 1.50701 * 120.00034 * 179.97438 * 20 19 3 23 23 N 1.46502 * 109.47241 * 180.02562 * 22 20 19 24 24 C 1.34948 * 126.03993 * 124.99420 * 23 22 20 25 25 C 1.35315 * 107.74520 * 179.97438 * 24 23 22 26 26 C 1.39870 * 107.92205 * 0.02562 * 25 24 23 27 27 N 1.30839 * 108.19862 * 359.97438 * 26 25 24 28 28 H 1.09000 * 109.46981 * 300.00256 * 1 2 3 29 29 H 1.09004 * 109.46718 * 59.99940 * 1 2 3 30 30 H 1.08998 * 109.47223 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47665 * 239.99634 * 2 1 3 32 32 H 1.09005 * 109.46827 * 119.99523 * 2 1 3 33 33 H 1.09001 * 109.47485 * 304.99806 * 5 3 2 34 34 H 1.08998 * 109.47797 * 65.00093 * 5 3 2 35 35 H 0.97001 * 119.99718 * 0.02562 * 6 5 3 36 36 H 1.08993 * 109.47248 * 300.00260 * 9 7 6 37 37 H 1.08997 * 109.47048 * 60.00458 * 9 7 6 38 38 H 0.96999 * 120.00245 * 179.97438 * 14 13 11 39 39 H 0.96998 * 120.00250 * 94.99438 * 19 3 2 40 40 H 1.08994 * 109.47031 * 59.99996 * 22 20 19 41 41 H 1.09001 * 109.47021 * 299.99528 * 22 20 19 42 42 H 1.08007 * 126.12251 * 0.27272 * 24 23 22 43 43 H 1.08001 * 126.03475 * 179.97438 * 25 24 23 44 44 H 1.07997 * 125.89701 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1257 6 7 4.0631 2.8167 -0.0059 7 6 5.3857 3.0629 -0.0857 8 8 6.1636 2.1482 -0.2571 9 6 5.8982 4.4748 0.0369 10 16 7.7021 4.4769 -0.1116 11 6 8.0216 6.2007 0.0641 12 1 7.2029 6.8892 0.2127 13 6 9.3255 6.6737 0.0126 14 7 10.3234 5.8344 -0.1671 15 14 9.6642 8.5012 0.1996 16 1 9.8678 8.8226 1.6350 17 1 10.8853 8.8592 -0.5659 18 1 8.5087 9.2747 -0.3218 19 7 1.6525 2.0975 1.2518 20 6 0.4351 2.6645 1.3669 21 8 -0.3396 2.6319 0.4343 22 6 0.0362 3.3378 2.6547 23 7 -1.3227 3.8701 2.5269 24 6 -2.3610 3.6012 3.3460 25 6 -3.4351 4.2854 2.8885 26 6 -3.0399 4.9962 1.7506 27 7 -1.7738 4.7481 1.5331 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.9954 0.8311 0.6660 34 1 3.8500 1.0376 -1.0959 35 1 3.4411 3.5483 0.1315 36 1 5.4681 5.0875 -0.7553 37 1 5.6127 4.8820 1.0068 38 1 11.2346 6.1650 -0.2035 39 1 2.2719 2.1232 1.9978 40 1 0.7276 4.1531 2.8677 41 1 0.0671 2.6131 3.4683 42 1 -2.3374 2.9592 4.2142 43 1 -4.4231 4.2823 3.3246 44 1 -3.6707 5.6394 1.1550 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721452050.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:13 Heat of formation + Delta-G solvation = 8.143031 kcal Electronic energy + Delta-G solvation = -26367.993236 eV Core-core repulsion = 22448.763519 eV Total energy + Delta-G solvation = -3919.229717 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.50628 -40.35700 -39.13206 -36.78506 -33.89130 -33.82408 -32.62490 -32.45627 -30.36297 -30.15812 -28.39005 -27.32239 -25.51343 -23.55744 -22.42513 -21.39322 -21.12784 -20.68180 -20.31727 -18.08667 -17.71791 -17.62021 -16.77298 -16.38229 -16.05563 -15.89460 -15.15083 -14.95243 -14.82712 -14.75458 -14.12881 -13.99002 -13.90438 -13.67699 -13.57264 -13.39496 -13.08490 -12.98062 -12.72322 -12.61952 -12.33113 -11.88886 -11.80996 -11.45488 -11.17293 -11.08513 -11.05212 -10.88494 -10.78359 -10.40604 -9.85054 -9.65052 -9.54536 -9.40491 -9.10476 -9.01782 -8.89234 -8.27888 -6.53719 -6.24516 -3.95445 1.56519 2.02063 2.15445 2.63522 2.71499 2.96294 3.01766 3.20534 3.25932 3.29925 3.63696 4.06495 4.17623 4.18260 4.33066 4.46985 4.56015 4.65868 4.75358 4.78022 5.05965 5.07333 5.10867 5.20181 5.25376 5.43460 5.45066 5.47015 5.56994 5.69146 5.70477 5.72073 5.78454 5.83400 6.04149 6.09203 6.12748 6.35803 6.47379 6.60250 7.01478 7.44661 7.56600 7.58773 7.77103 8.32495 8.51250 9.20994 10.82876 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012269 B = 0.002260 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.690192 B =12388.497361 C =14317.260412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.131 4.131 3 C 0.137 3.863 4 H 0.097 0.903 5 C 0.114 3.886 6 N -0.740 5.740 7 C 0.532 3.468 8 O -0.516 6.516 9 C -0.154 4.154 10 S -0.059 6.059 11 C -0.536 4.536 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 N -0.725 5.725 20 C 0.500 3.500 21 O -0.499 6.499 22 C 0.114 3.886 23 N -0.364 5.364 24 C 0.050 3.950 25 C -0.270 4.270 26 C 0.039 3.961 27 N -0.265 5.265 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.047 0.953 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.399 0.601 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.269 0.731 39 H 0.404 0.596 40 H 0.116 0.884 41 H 0.124 0.876 42 H 0.173 0.827 43 H 0.147 0.853 44 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.411 -8.822 8.391 29.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.170 4.170 3 C 0.032 3.968 4 H 0.115 0.885 5 C -0.011 4.011 6 N -0.395 5.395 7 C 0.319 3.681 8 O -0.390 6.390 9 C -0.304 4.304 10 S 0.167 5.833 11 C -0.684 4.684 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.197 1.197 19 N -0.379 5.379 20 C 0.284 3.716 21 O -0.372 6.372 22 C -0.012 4.012 23 N -0.147 5.147 24 C -0.095 4.095 25 C -0.300 4.300 26 C -0.148 4.148 27 N -0.085 5.085 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.233 0.767 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.238 0.762 40 H 0.134 0.866 41 H 0.142 0.858 42 H 0.190 0.810 43 H 0.165 0.835 44 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -24.330 -10.240 6.647 27.221 hybrid contribution -1.357 2.351 1.363 3.038 sum -25.688 -7.888 8.010 28.040 Atomic orbital electron populations 1.21768 0.94608 1.00680 1.02863 1.21890 0.97094 0.95064 1.02993 1.21348 0.93727 0.94291 0.87394 0.88492 1.21589 0.91253 0.84781 1.03503 1.45999 1.07860 1.08811 1.76867 1.20328 0.81314 0.91155 0.75340 1.90713 1.55431 1.46161 1.46659 1.23531 1.06903 0.95109 1.04895 1.85389 0.91879 1.11017 1.95005 1.22861 0.95446 0.92398 1.57700 0.90928 1.24994 0.95072 0.98990 0.94533 1.70013 0.99495 1.34586 1.46174 0.86163 0.78016 0.82969 0.78337 1.20267 1.20726 1.19674 1.46015 1.16460 1.58228 1.17216 1.20458 0.82282 0.79067 0.89817 1.90822 1.50552 1.56526 1.39329 1.21479 0.81924 1.00217 0.97595 1.48066 1.08196 1.36632 1.21795 1.22526 0.87798 1.01658 0.97509 1.21500 1.00183 1.06739 1.01547 1.23945 0.93103 1.00347 0.97413 1.77531 1.13101 1.08794 1.09050 0.92888 0.92110 0.93409 0.90451 0.91386 0.90847 0.89909 0.76705 0.89200 0.89268 0.92159 0.76158 0.86580 0.85801 0.81030 0.83536 0.80097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.51 37.16 0.32 -0.91 16 2 C -0.13 -0.95 5.61 -26.73 -0.15 -1.10 16 3 C 0.14 1.09 2.42 -67.93 -0.16 0.92 16 4 H 0.10 0.96 7.58 -51.93 -0.39 0.56 16 5 C 0.11 1.11 5.23 -4.04 -0.02 1.09 16 6 N -0.74 -8.85 5.39 -60.29 -0.32 -9.17 16 7 C 0.53 9.33 7.85 -10.99 -0.09 9.25 16 8 O -0.52 -11.13 15.86 5.55 0.09 -11.04 16 9 C -0.15 -3.00 6.16 36.01 0.22 -2.78 16 10 S -0.06 -1.58 20.57 -107.50 -2.21 -3.80 16 11 C -0.54 -15.10 9.50 30.94 0.29 -14.81 16 12 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 13 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 14 N -0.87 -25.94 13.22 55.49 0.73 -25.20 16 15 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 N -0.72 -4.68 4.47 -53.81 -0.24 -4.92 16 20 C 0.50 4.18 6.43 -10.98 -0.07 4.11 16 21 O -0.50 -6.30 12.84 5.56 0.07 -6.23 16 22 C 0.11 0.67 6.99 -5.19 -0.04 0.64 16 23 N -0.36 -3.32 3.40 -62.54 -0.21 -3.54 16 24 C 0.05 0.36 11.45 -17.22 -0.20 0.16 16 25 C -0.27 -2.12 10.80 -40.01 -0.43 -2.56 16 26 C 0.04 0.38 12.03 -17.36 -0.21 0.17 16 27 N -0.26 -3.20 11.64 30.62 0.36 -2.84 16 28 H 0.05 0.51 5.64 -51.93 -0.29 0.21 16 29 H 0.06 0.63 7.85 -51.93 -0.41 0.22 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.40 4.01 8.14 -40.82 -0.33 3.68 16 36 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 37 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 38 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.40 1.79 8.60 -40.82 -0.35 1.44 16 40 H 0.12 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.12 0.26 8.07 -51.93 -0.42 -0.16 16 42 H 0.17 0.57 8.06 -52.48 -0.42 0.15 16 43 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 44 H 0.18 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 388.04 15.07 5.85 5.85 Total: -1.00 -38.88 388.04 -7.94 -46.82 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -6.39 Total: 1.66 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -0.63 Total: -3.84 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: 0.31 Total: -45.68 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: 0.16 Total: -17.27 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -38.88 -7.94 -46.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721452050.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.965 kcal (2) G-P(sol) polarization free energy of solvation -38.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds