Wall clock time and date at job start Sat Apr 11 2020 06:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47192 * 2 1 4 4 H 1.08995 * 109.47089 * 304.99802 * 3 2 1 5 5 C 1.52997 * 109.47030 * 184.99742 * 3 2 1 6 6 N 1.46504 * 109.47259 * 184.99880 * 5 3 2 7 7 C 1.34771 * 120.00342 * 179.97438 * 6 5 3 8 8 O 1.21284 * 120.00212 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.00125 * 179.97438 * 7 6 5 10 10 S 1.81002 * 109.47087 * 180.02562 * 9 7 6 11 11 C 1.76198 * 100.00078 * 180.02562 * 10 9 7 12 12 H 1.08001 * 119.99796 * 0.02562 * 11 10 9 13 13 C 1.38799 * 120.00261 * 179.97438 * 11 10 9 14 14 N 1.31628 * 119.99823 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00233 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47341 * 89.99706 * 15 13 11 17 17 H 1.48496 * 109.47227 * 210.00023 * 15 13 11 18 18 H 1.48507 * 109.47201 * 329.99865 * 15 13 11 19 19 N 1.46500 * 109.47431 * 64.99900 * 3 2 1 20 20 C 1.34781 * 119.99790 * 275.00101 * 19 3 2 21 21 O 1.21281 * 119.99862 * 0.02562 * 20 19 3 22 22 C 1.50701 * 120.00034 * 179.97438 * 20 19 3 23 23 N 1.46502 * 109.47241 * 180.02562 * 22 20 19 24 24 C 1.34948 * 126.03993 * 124.99420 * 23 22 20 25 25 C 1.35315 * 107.74520 * 179.97438 * 24 23 22 26 26 C 1.39870 * 107.92205 * 0.02562 * 25 24 23 27 27 N 1.30839 * 108.19862 * 359.97438 * 26 25 24 28 28 H 1.09000 * 109.46981 * 300.00256 * 1 2 3 29 29 H 1.09004 * 109.46718 * 59.99940 * 1 2 3 30 30 H 1.08998 * 109.47223 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47665 * 239.99634 * 2 1 3 32 32 H 1.09005 * 109.46827 * 119.99523 * 2 1 3 33 33 H 1.09001 * 109.47485 * 304.99806 * 5 3 2 34 34 H 1.08998 * 109.47797 * 65.00093 * 5 3 2 35 35 H 0.97001 * 119.99718 * 0.02562 * 6 5 3 36 36 H 1.08993 * 109.47248 * 300.00260 * 9 7 6 37 37 H 1.08997 * 109.47048 * 60.00458 * 9 7 6 38 38 H 0.96999 * 120.00245 * 179.97438 * 14 13 11 39 39 H 0.96998 * 120.00250 * 94.99438 * 19 3 2 40 40 H 1.08994 * 109.47031 * 59.99996 * 22 20 19 41 41 H 1.09001 * 109.47021 * 299.99528 * 22 20 19 42 42 H 1.08007 * 126.12251 * 0.27272 * 24 23 22 43 43 H 1.08001 * 126.03475 * 179.97438 * 25 24 23 44 44 H 1.07997 * 125.89701 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1257 6 7 4.0631 2.8167 -0.0059 7 6 5.3857 3.0629 -0.0857 8 8 6.1636 2.1482 -0.2571 9 6 5.8982 4.4748 0.0369 10 16 7.7021 4.4769 -0.1116 11 6 8.0216 6.2007 0.0641 12 1 7.2029 6.8892 0.2127 13 6 9.3255 6.6737 0.0126 14 7 10.3234 5.8344 -0.1671 15 14 9.6642 8.5012 0.1996 16 1 9.8678 8.8226 1.6350 17 1 10.8853 8.8592 -0.5659 18 1 8.5087 9.2747 -0.3218 19 7 1.6525 2.0975 1.2518 20 6 0.4351 2.6645 1.3669 21 8 -0.3396 2.6319 0.4343 22 6 0.0362 3.3378 2.6547 23 7 -1.3227 3.8701 2.5269 24 6 -2.3610 3.6012 3.3460 25 6 -3.4351 4.2854 2.8885 26 6 -3.0399 4.9962 1.7506 27 7 -1.7738 4.7481 1.5331 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.9954 0.8311 0.6660 34 1 3.8500 1.0376 -1.0959 35 1 3.4411 3.5483 0.1315 36 1 5.4681 5.0875 -0.7553 37 1 5.6127 4.8820 1.0068 38 1 11.2346 6.1650 -0.2035 39 1 2.2719 2.1232 1.9978 40 1 0.7276 4.1531 2.8677 41 1 0.0671 2.6131 3.4683 42 1 -2.3374 2.9592 4.2142 43 1 -4.4231 4.2823 3.3246 44 1 -3.6707 5.6394 1.1550 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001721452050.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:12 Heat of formation + Delta-G solvation = -21.490017 kcal Electronic energy + Delta-G solvation = -26369.278221 eV Core-core repulsion = 22448.763519 eV Total energy + Delta-G solvation = -3920.514703 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.09449 -41.14038 -40.36321 -37.64383 -35.00805 -34.58654 -34.42285 -33.24809 -31.48297 -30.93322 -29.33325 -28.06074 -27.61857 -24.41943 -23.07465 -21.99293 -21.85847 -21.53396 -21.27835 -19.87087 -18.46196 -18.29653 -17.79959 -17.45833 -17.00324 -16.88012 -16.76012 -16.41244 -15.86269 -15.51197 -15.41545 -14.85166 -14.64916 -14.59870 -14.47281 -14.40774 -14.20951 -13.96065 -13.61556 -13.50835 -13.18270 -13.16926 -12.93521 -12.88687 -12.65555 -12.53319 -12.20057 -11.83583 -11.73165 -11.51810 -11.14793 -11.09408 -10.99848 -10.29295 -10.28346 -10.18775 -10.09233 -9.46973 -8.66557 -8.35387 -6.12905 0.99691 1.26199 1.41699 1.45976 1.52675 1.55389 1.56974 1.59765 2.02571 2.11830 2.25439 2.29242 2.98834 3.30953 3.50833 3.61830 3.78266 3.89566 4.00949 4.08493 4.09803 4.20383 4.27360 4.28020 4.36311 4.50559 4.51616 4.65427 4.73783 4.77820 4.90266 4.94649 5.04584 5.10727 5.18899 5.34057 5.39711 5.41528 5.46749 5.75943 6.13083 6.19230 6.41557 6.48829 6.83097 7.06312 7.19058 7.20333 8.73637 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012269 B = 0.002260 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.690192 B =12388.497361 C =14317.260412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.126 4.126 3 C 0.150 3.850 4 H 0.078 0.922 5 C 0.117 3.883 6 N -0.713 5.713 7 C 0.538 3.462 8 O -0.561 6.561 9 C -0.132 4.132 10 S -0.147 6.147 11 C -0.547 4.547 12 H 0.081 0.919 13 C 0.014 3.986 14 N -0.910 5.910 15 Si 0.997 3.003 16 H -0.267 1.267 17 H -0.278 1.278 18 H -0.260 1.260 19 N -0.712 5.712 20 C 0.500 3.500 21 O -0.546 6.546 22 C 0.109 3.891 23 N -0.372 5.372 24 C 0.055 3.945 25 C -0.286 4.286 26 C 0.023 3.977 27 N -0.322 5.322 28 H 0.045 0.955 29 H 0.036 0.964 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.412 0.588 36 H 0.103 0.897 37 H 0.112 0.888 38 H 0.271 0.729 39 H 0.417 0.583 40 H 0.131 0.869 41 H 0.169 0.831 42 H 0.214 0.786 43 H 0.167 0.833 44 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.841 -8.512 10.406 30.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.165 4.165 3 C 0.044 3.956 4 H 0.096 0.904 5 C -0.007 4.007 6 N -0.367 5.367 7 C 0.323 3.677 8 O -0.439 6.439 9 C -0.283 4.283 10 S 0.081 5.919 11 C -0.695 4.695 12 H 0.099 0.901 13 C -0.191 4.191 14 N -0.546 5.546 15 Si 0.819 3.181 16 H -0.192 1.192 17 H -0.203 1.203 18 H -0.184 1.184 19 N -0.367 5.367 20 C 0.285 3.715 21 O -0.422 6.422 22 C -0.016 4.016 23 N -0.155 5.155 24 C -0.090 4.090 25 C -0.315 4.315 26 C -0.163 4.163 27 N -0.143 5.143 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.248 0.752 36 H 0.121 0.879 37 H 0.130 0.870 38 H 0.080 0.920 39 H 0.255 0.745 40 H 0.149 0.851 41 H 0.186 0.814 42 H 0.230 0.770 43 H 0.184 0.816 44 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -25.798 -9.926 8.688 28.975 hybrid contribution -1.050 2.166 0.749 2.521 sum -26.848 -7.760 9.437 29.497 Atomic orbital electron populations 1.21671 0.95489 1.00704 1.01317 1.21858 0.96039 0.94479 1.04125 1.21101 0.92002 0.94870 0.87580 0.90415 1.21705 0.92264 0.83144 1.03616 1.45715 1.05996 1.10474 1.74538 1.19961 0.82671 0.89700 0.75335 1.90707 1.56971 1.46954 1.49225 1.23382 1.01104 0.97180 1.06647 1.85528 0.99249 1.11768 1.95404 1.23194 0.96095 0.92641 1.57524 0.90078 1.26100 0.94775 1.04342 0.93883 1.70171 1.00016 1.37087 1.47369 0.84976 0.78093 0.76347 0.78717 1.19164 1.20346 1.18443 1.45886 1.16343 1.57470 1.17033 1.20927 0.81960 0.78406 0.90178 1.90818 1.51955 1.58356 1.41109 1.21829 0.81020 1.01454 0.97259 1.48306 1.09508 1.36252 1.21434 1.23231 0.86884 1.01033 0.97833 1.21861 1.01569 1.06861 1.01230 1.24351 0.92955 1.00701 0.98281 1.77429 1.14409 1.11058 1.11397 0.93628 0.94494 0.92481 0.89901 0.89700 0.89863 0.90545 0.75187 0.87871 0.86963 0.91982 0.74540 0.85114 0.81356 0.76985 0.81587 0.78965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.51 71.98 0.61 -1.58 16 2 C -0.13 -1.59 5.61 30.59 0.17 -1.42 16 3 C 0.15 2.13 2.42 44.99 0.11 2.24 16 4 H 0.08 1.49 7.58 -2.39 -0.02 1.47 16 5 C 0.12 2.06 5.23 86.38 0.45 2.52 16 6 N -0.71 -15.67 5.39 -463.06 -2.49 -18.17 16 7 C 0.54 18.28 7.85 87.66 0.69 18.97 16 8 O -0.56 -24.22 15.86 -3.04 -0.05 -24.27 16 9 C -0.13 -5.00 6.16 71.24 0.44 -4.57 16 10 S -0.15 -7.95 20.57 -56.49 -1.16 -9.11 16 11 C -0.55 -30.83 9.50 67.95 0.65 -30.18 16 12 H 0.08 4.26 7.80 -2.91 -0.02 4.24 16 13 C 0.01 0.78 5.49 84.86 0.47 1.25 16 14 N -0.91 -55.32 13.22 21.65 0.29 -55.04 16 15 Si 1.00 43.28 29.55 68.60 2.03 45.31 16 16 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 17 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 18 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 19 N -0.71 -7.53 4.47 -442.54 -1.98 -9.51 16 20 C 0.50 7.51 6.43 87.66 0.56 8.07 16 21 O -0.55 -13.65 12.84 -3.03 -0.04 -13.69 16 22 C 0.11 0.98 6.99 85.63 0.60 1.58 16 23 N -0.37 -6.15 3.40 -351.79 -1.20 -7.35 16 24 C 0.06 0.66 11.45 83.54 0.96 1.61 16 25 C -0.29 -4.11 10.80 21.99 0.24 -3.87 16 26 C 0.02 0.45 12.03 85.24 1.03 1.48 16 27 N -0.32 -7.77 11.64 -57.02 -0.66 -8.43 16 28 H 0.04 0.81 5.64 -2.39 -0.01 0.80 16 29 H 0.04 0.77 7.85 -2.39 -0.02 0.75 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.41 7.26 8.14 -92.71 -0.75 6.50 16 36 H 0.10 3.65 8.14 -2.40 -0.02 3.63 16 37 H 0.11 3.74 8.14 -2.40 -0.02 3.72 16 38 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 39 H 0.42 2.30 8.60 -92.71 -0.80 1.50 16 40 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.17 -0.07 8.07 -2.39 -0.02 -0.09 16 42 H 0.21 0.51 8.06 -2.91 -0.02 0.48 16 43 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 44 H 0.19 2.77 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -88.73 388.04 1.18 -87.55 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -0.52 Total: 16.62 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: 6.96 Total: -3.91 kcal Atomic # 7 Polarization: -92.45 SS G_CDS: -6.05 Total: -98.49 kcal Atomic # 8 Polarization: -37.88 SS G_CDS: -0.09 Total: -37.96 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: -7.95 SS G_CDS: -1.16 Total: -9.11 kcal Total: -88.73 1.18 -87.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721452050.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.062 kcal (2) G-P(sol) polarization free energy of solvation -88.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds