Wall clock time and date at job start Sat Apr 11 2020 06:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47180 * 2 1 4 4 H 1.08998 * 109.47079 * 54.99767 * 3 2 1 5 5 C 1.52992 * 109.47321 * 174.99739 * 3 2 1 6 6 N 1.46499 * 109.47267 * 175.00102 * 5 3 2 7 7 C 1.34784 * 119.99971 * 180.02562 * 6 5 3 8 8 O 1.21274 * 119.99897 * 359.72827 * 7 6 5 9 9 C 1.50695 * 119.99635 * 179.97438 * 7 6 5 10 10 S 1.81006 * 109.46975 * 180.02562 * 9 7 6 11 11 C 1.76200 * 100.00155 * 179.97438 * 10 9 7 12 12 H 1.08005 * 119.99670 * 0.02562 * 11 10 9 13 13 C 1.38796 * 120.00050 * 180.02562 * 11 10 9 14 14 N 1.31626 * 119.99898 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00049 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47094 * 59.99725 * 15 13 11 17 17 H 1.48498 * 109.47301 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47200 * 299.99922 * 15 13 11 19 19 N 1.46498 * 109.46876 * 294.99855 * 3 2 1 20 20 C 1.34776 * 119.99880 * 85.00192 * 19 3 2 21 21 O 1.21281 * 120.00492 * 359.97438 * 20 19 3 22 22 C 1.50706 * 119.99726 * 179.97438 * 20 19 3 23 23 N 1.46507 * 109.46806 * 180.02562 * 22 20 19 24 24 C 1.34938 * 126.03802 * 125.00010 * 23 22 20 25 25 C 1.35319 * 107.74791 * 179.97438 * 24 23 22 26 26 C 1.39874 * 107.91751 * 359.97438 * 25 24 23 27 27 N 1.30835 * 108.20107 * 359.74361 * 26 25 24 28 28 H 1.08995 * 109.47554 * 300.00156 * 1 2 3 29 29 H 1.09006 * 109.47124 * 60.00609 * 1 2 3 30 30 H 1.08995 * 109.47171 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47437 * 240.00059 * 2 1 3 32 32 H 1.08999 * 109.47307 * 119.99727 * 2 1 3 33 33 H 1.09004 * 109.47330 * 55.00006 * 5 3 2 34 34 H 1.09005 * 109.47124 * 295.00210 * 5 3 2 35 35 H 0.96999 * 119.99984 * 359.97438 * 6 5 3 36 36 H 1.09005 * 109.47403 * 300.00056 * 9 7 6 37 37 H 1.09002 * 109.47422 * 60.00295 * 9 7 6 38 38 H 0.97005 * 120.00072 * 180.02562 * 14 13 11 39 39 H 0.96994 * 120.00389 * 264.99489 * 19 3 2 40 40 H 1.08994 * 109.46905 * 299.99507 * 22 20 19 41 41 H 1.08995 * 109.47277 * 59.99864 * 22 20 19 42 42 H 1.08008 * 126.12992 * 359.97438 * 24 23 22 43 43 H 1.07998 * 126.04295 * 180.02562 * 25 24 23 44 44 H 1.08000 * 125.89674 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5647 1.4444 0.1258 6 7 4.0630 2.8169 0.0060 7 6 5.3857 3.0630 0.0860 8 8 6.1630 2.1489 0.2619 9 6 5.8982 4.4747 -0.0378 10 16 7.7022 4.4768 0.1096 11 6 8.0218 6.2005 -0.0673 12 1 7.2029 6.8891 -0.2151 13 6 9.3257 6.6734 -0.0168 14 7 10.3235 5.8342 0.1637 15 14 9.6644 8.5009 -0.2037 16 1 8.9704 9.2460 0.8772 17 1 11.1263 8.7452 -0.1130 18 1 9.1656 8.9643 -1.5234 19 7 1.6524 2.0974 -1.2518 20 6 0.4352 2.6644 -1.3670 21 8 -0.3396 2.6320 -0.4345 22 6 0.0367 3.3386 -2.6546 23 7 -1.3219 3.8717 -2.5265 24 6 -1.6966 5.1501 -2.7415 25 6 -3.0288 5.2324 -2.5191 26 6 -3.4839 3.9605 -2.1562 27 7 -2.4626 3.1428 -2.1660 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9954 0.8312 -0.6658 34 1 3.8498 1.0377 1.0961 35 1 3.4410 3.5483 -0.1315 36 1 5.6128 4.8811 -1.0082 37 1 5.4679 5.0882 0.7538 38 1 11.2349 6.1647 0.1994 39 1 2.2719 2.1232 -1.9978 40 1 0.7281 4.1541 -2.8667 41 1 0.0681 2.6145 -3.4687 42 1 -1.0492 5.9622 -3.0380 43 1 -3.6339 6.1226 -2.6070 44 1 -4.5031 3.6979 -1.9138 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721452051.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:16 Heat of formation + Delta-G solvation = 7.841320 kcal Electronic energy + Delta-G solvation = -26375.644458 eV Core-core repulsion = 22456.401657 eV Total energy + Delta-G solvation = -3919.242800 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.50260 -40.35558 -39.15154 -36.78371 -33.90418 -33.82087 -32.59681 -32.47759 -30.36483 -30.16084 -28.38553 -27.32168 -25.53313 -23.53291 -22.40858 -21.38638 -21.12330 -20.68041 -20.34127 -18.11387 -17.70600 -17.60508 -16.75172 -16.37354 -16.21001 -15.74837 -15.19178 -15.07117 -14.84891 -14.61146 -14.18846 -13.95549 -13.87647 -13.71975 -13.51800 -13.39597 -13.05940 -13.00461 -12.71650 -12.63594 -12.33039 -11.86124 -11.78588 -11.41848 -11.12223 -11.09673 -11.07929 -10.90567 -10.81279 -10.41017 -9.88170 -9.62400 -9.57247 -9.41247 -9.11971 -9.03750 -8.88656 -8.30464 -6.56006 -6.26356 -3.97646 1.56583 2.02421 2.15574 2.63385 2.71167 2.94214 2.99673 3.19679 3.23829 3.26583 3.61392 4.05773 4.15707 4.21724 4.33463 4.50957 4.53846 4.67334 4.77078 4.78930 5.05219 5.08706 5.10260 5.23123 5.26207 5.43412 5.48227 5.49002 5.57471 5.71492 5.73474 5.75360 5.80121 5.83735 6.05241 6.07330 6.20859 6.35825 6.45107 6.60818 7.01598 7.43844 7.53852 7.56196 7.77175 8.29921 8.49010 9.18835 10.80953 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012348 B = 0.002265 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.006191 B =12360.294756 C =14396.710882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.132 4.132 3 C 0.138 3.862 4 H 0.096 0.904 5 C 0.113 3.887 6 N -0.740 5.740 7 C 0.532 3.468 8 O -0.515 6.515 9 C -0.154 4.154 10 S -0.059 6.059 11 C -0.537 4.537 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.274 1.274 17 H -0.282 1.282 18 H -0.274 1.274 19 N -0.725 5.725 20 C 0.500 3.500 21 O -0.500 6.500 22 C 0.114 3.886 23 N -0.364 5.364 24 C 0.053 3.947 25 C -0.271 4.271 26 C 0.039 3.961 27 N -0.268 5.268 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.046 0.954 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.398 0.602 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.269 0.731 39 H 0.404 0.596 40 H 0.126 0.874 41 H 0.114 0.886 42 H 0.174 0.826 43 H 0.147 0.853 44 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.044 -5.667 -7.210 26.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C 0.033 3.967 4 H 0.114 0.886 5 C -0.012 4.012 6 N -0.395 5.395 7 C 0.318 3.682 8 O -0.389 6.389 9 C -0.304 4.304 10 S 0.168 5.832 11 C -0.685 4.685 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.502 5.502 15 Si 0.745 3.255 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.199 1.199 19 N -0.379 5.379 20 C 0.284 3.716 21 O -0.372 6.372 22 C -0.012 4.012 23 N -0.147 5.147 24 C -0.092 4.092 25 C -0.300 4.300 26 C -0.148 4.148 27 N -0.088 5.088 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.232 0.768 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.238 0.762 40 H 0.144 0.856 41 H 0.132 0.868 42 H 0.191 0.809 43 H 0.165 0.835 44 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -23.565 -8.505 -6.022 25.767 hybrid contribution -0.866 3.504 -0.891 3.718 sum -24.432 -5.001 -6.913 25.879 Atomic orbital electron populations 1.21773 0.94329 1.00765 1.03136 1.21897 0.97310 0.94946 1.02918 1.21345 0.93638 0.94423 0.87299 0.88584 1.21599 0.91297 0.84722 1.03535 1.45994 1.07824 1.08802 1.76917 1.20330 0.81319 0.91148 0.75393 1.90715 1.55443 1.46180 1.46520 1.23530 1.06963 0.95100 1.04831 1.85412 0.91819 1.10989 1.95008 1.22814 0.95409 0.92392 1.57914 0.90995 1.24992 0.95067 0.98983 0.94519 1.70002 0.99546 1.34673 1.46003 0.86220 0.77423 0.83008 0.78830 1.19929 1.20778 1.19940 1.46017 1.16412 1.58270 1.17221 1.20463 0.82107 0.79365 0.89706 1.90823 1.50134 1.56883 1.39409 1.21478 0.80597 1.01581 0.97538 1.48050 1.06442 1.06673 1.53547 1.22570 0.97056 0.87711 1.01897 1.21509 0.94479 0.99396 1.14628 1.23924 0.98688 0.92084 1.00087 1.77478 0.91278 1.19982 1.20079 0.92223 0.92374 0.93462 0.91408 0.90548 0.90814 0.89894 0.76824 0.89298 0.89240 0.92077 0.76158 0.85571 0.86832 0.80875 0.83501 0.80147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.51 37.16 0.32 -1.03 16 2 C -0.13 -1.01 5.61 -26.73 -0.15 -1.16 16 3 C 0.14 1.09 2.42 -67.93 -0.16 0.93 16 4 H 0.10 0.93 7.58 -51.93 -0.39 0.53 16 5 C 0.11 1.09 5.23 -4.05 -0.02 1.07 16 6 N -0.74 -8.54 5.39 -60.30 -0.32 -8.87 16 7 C 0.53 9.13 7.85 -10.98 -0.09 9.04 16 8 O -0.51 -10.99 15.86 5.56 0.09 -10.90 16 9 C -0.15 -2.92 6.16 36.00 0.22 -2.70 16 10 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 11 C -0.54 -14.93 9.50 30.94 0.29 -14.63 16 12 H 0.07 1.88 7.80 -52.48 -0.41 1.47 16 13 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 14 N -0.87 -25.71 13.22 55.49 0.73 -24.97 16 15 Si 0.92 20.97 29.55 -169.99 -5.02 15.95 16 16 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 19 N -0.72 -4.68 4.47 -53.81 -0.24 -4.92 16 20 C 0.50 4.17 6.43 -10.98 -0.07 4.10 16 21 O -0.50 -6.30 12.86 5.56 0.07 -6.22 16 22 C 0.11 0.67 6.99 -5.19 -0.04 0.63 16 23 N -0.36 -3.31 3.39 -62.54 -0.21 -3.53 16 24 C 0.05 0.40 11.45 -17.23 -0.20 0.20 16 25 C -0.27 -2.18 10.80 -40.01 -0.43 -2.61 16 26 C 0.04 0.37 12.03 -17.36 -0.21 0.16 16 27 N -0.27 -3.10 11.66 30.62 0.36 -2.75 16 28 H 0.06 0.65 7.85 -51.93 -0.41 0.25 16 29 H 0.06 0.63 5.65 -51.93 -0.29 0.33 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.40 3.72 8.14 -40.82 -0.33 3.39 16 36 H 0.09 1.52 8.14 -51.91 -0.42 1.10 16 37 H 0.09 1.60 8.14 -51.92 -0.42 1.17 16 38 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.40 1.79 8.60 -40.82 -0.35 1.44 16 40 H 0.13 0.32 8.07 -51.93 -0.42 -0.10 16 41 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.17 0.71 8.06 -52.48 -0.42 0.29 16 43 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 44 H 0.18 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 388.07 15.07 5.85 5.85 Total: -1.00 -38.43 388.07 -7.94 -46.37 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -6.39 Total: 1.77 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: -0.63 Total: -4.01 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: 0.31 Total: -45.03 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: 0.16 Total: -17.13 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -38.43 -7.94 -46.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721452051.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.208 kcal (2) G-P(sol) polarization free energy of solvation -38.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds