Wall clock time and date at job start Sat Apr 11 2020 06:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47180 * 2 1 4 4 H 1.08998 * 109.47079 * 54.99767 * 3 2 1 5 5 C 1.52992 * 109.47321 * 174.99739 * 3 2 1 6 6 N 1.46499 * 109.47267 * 175.00102 * 5 3 2 7 7 C 1.34784 * 119.99971 * 180.02562 * 6 5 3 8 8 O 1.21274 * 119.99897 * 359.72827 * 7 6 5 9 9 C 1.50695 * 119.99635 * 179.97438 * 7 6 5 10 10 S 1.81006 * 109.46975 * 180.02562 * 9 7 6 11 11 C 1.76200 * 100.00155 * 179.97438 * 10 9 7 12 12 H 1.08005 * 119.99670 * 0.02562 * 11 10 9 13 13 C 1.38796 * 120.00050 * 180.02562 * 11 10 9 14 14 N 1.31626 * 119.99898 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00049 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47094 * 59.99725 * 15 13 11 17 17 H 1.48498 * 109.47301 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47200 * 299.99922 * 15 13 11 19 19 N 1.46498 * 109.46876 * 294.99855 * 3 2 1 20 20 C 1.34776 * 119.99880 * 85.00192 * 19 3 2 21 21 O 1.21281 * 120.00492 * 359.97438 * 20 19 3 22 22 C 1.50706 * 119.99726 * 179.97438 * 20 19 3 23 23 N 1.46507 * 109.46806 * 180.02562 * 22 20 19 24 24 C 1.34938 * 126.03802 * 125.00010 * 23 22 20 25 25 C 1.35319 * 107.74791 * 179.97438 * 24 23 22 26 26 C 1.39874 * 107.91751 * 359.97438 * 25 24 23 27 27 N 1.30835 * 108.20107 * 359.74361 * 26 25 24 28 28 H 1.08995 * 109.47554 * 300.00156 * 1 2 3 29 29 H 1.09006 * 109.47124 * 60.00609 * 1 2 3 30 30 H 1.08995 * 109.47171 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47437 * 240.00059 * 2 1 3 32 32 H 1.08999 * 109.47307 * 119.99727 * 2 1 3 33 33 H 1.09004 * 109.47330 * 55.00006 * 5 3 2 34 34 H 1.09005 * 109.47124 * 295.00210 * 5 3 2 35 35 H 0.96999 * 119.99984 * 359.97438 * 6 5 3 36 36 H 1.09005 * 109.47403 * 300.00056 * 9 7 6 37 37 H 1.09002 * 109.47422 * 60.00295 * 9 7 6 38 38 H 0.97005 * 120.00072 * 180.02562 * 14 13 11 39 39 H 0.96994 * 120.00389 * 264.99489 * 19 3 2 40 40 H 1.08994 * 109.46905 * 299.99507 * 22 20 19 41 41 H 1.08995 * 109.47277 * 59.99864 * 22 20 19 42 42 H 1.08008 * 126.12992 * 359.97438 * 24 23 22 43 43 H 1.07998 * 126.04295 * 180.02562 * 25 24 23 44 44 H 1.08000 * 125.89674 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5647 1.4444 0.1258 6 7 4.0630 2.8169 0.0060 7 6 5.3857 3.0630 0.0860 8 8 6.1630 2.1489 0.2619 9 6 5.8982 4.4747 -0.0378 10 16 7.7022 4.4768 0.1096 11 6 8.0218 6.2005 -0.0673 12 1 7.2029 6.8891 -0.2151 13 6 9.3257 6.6734 -0.0168 14 7 10.3235 5.8342 0.1637 15 14 9.6644 8.5009 -0.2037 16 1 8.9704 9.2460 0.8772 17 1 11.1263 8.7452 -0.1130 18 1 9.1656 8.9643 -1.5234 19 7 1.6524 2.0974 -1.2518 20 6 0.4352 2.6644 -1.3670 21 8 -0.3396 2.6320 -0.4345 22 6 0.0367 3.3386 -2.6546 23 7 -1.3219 3.8717 -2.5265 24 6 -1.6966 5.1501 -2.7415 25 6 -3.0288 5.2324 -2.5191 26 6 -3.4839 3.9605 -2.1562 27 7 -2.4626 3.1428 -2.1660 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9954 0.8312 -0.6658 34 1 3.8498 1.0377 1.0961 35 1 3.4410 3.5483 -0.1315 36 1 5.6128 4.8811 -1.0082 37 1 5.4679 5.0882 0.7538 38 1 11.2349 6.1647 0.1994 39 1 2.2719 2.1232 -1.9978 40 1 0.7281 4.1541 -2.8667 41 1 0.0681 2.6145 -3.4687 42 1 -1.0492 5.9622 -3.0380 43 1 -3.6339 6.1226 -2.6070 44 1 -4.5031 3.6979 -1.9138 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001721452051.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:15 Heat of formation + Delta-G solvation = -21.289460 kcal Electronic energy + Delta-G solvation = -26376.907663 eV Core-core repulsion = 22456.401657 eV Total energy + Delta-G solvation = -3920.506006 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.09259 -41.13615 -40.35459 -37.64270 -35.00209 -34.57120 -34.42213 -33.24330 -31.47139 -30.93225 -29.32072 -28.05717 -27.60284 -24.40983 -23.06827 -21.97874 -21.87317 -21.52893 -21.27813 -19.85971 -18.46994 -18.28445 -17.74657 -17.44150 -17.11926 -16.86653 -16.65597 -16.38272 -15.78453 -15.75834 -15.23664 -14.83828 -14.71512 -14.57275 -14.43265 -14.42350 -14.20224 -13.94372 -13.60985 -13.48235 -13.19314 -13.15919 -12.93531 -12.85189 -12.65394 -12.52195 -12.18969 -11.83520 -11.73326 -11.53361 -11.12037 -11.10297 -10.98421 -10.27108 -10.26422 -10.16947 -10.10818 -9.47041 -8.65199 -8.33690 -6.11376 0.98922 1.27543 1.44419 1.47582 1.52792 1.55040 1.57323 1.61498 2.02409 2.11733 2.26885 2.30705 3.00574 3.32729 3.50834 3.61957 3.79143 3.90405 4.01989 4.09542 4.10225 4.19068 4.27898 4.30053 4.37273 4.51668 4.52709 4.66424 4.73521 4.78614 4.90235 4.94756 5.04292 5.12163 5.19267 5.35012 5.41313 5.42689 5.47170 5.76564 6.11930 6.20427 6.44213 6.48869 6.82532 7.07858 7.19706 7.21931 8.75021 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012348 B = 0.002265 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.006191 B =12360.294756 C =14396.710882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.127 4.127 3 C 0.151 3.849 4 H 0.081 0.919 5 C 0.117 3.883 6 N -0.712 5.712 7 C 0.537 3.463 8 O -0.562 6.562 9 C -0.130 4.130 10 S -0.150 6.150 11 C -0.546 4.546 12 H 0.083 0.917 13 C 0.013 3.987 14 N -0.911 5.911 15 Si 0.997 3.003 16 H -0.264 1.264 17 H -0.281 1.281 18 H -0.260 1.260 19 N -0.712 5.712 20 C 0.500 3.500 21 O -0.546 6.546 22 C 0.109 3.891 23 N -0.372 5.372 24 C 0.054 3.946 25 C -0.287 4.287 26 C 0.025 3.975 27 N -0.318 5.318 28 H 0.038 0.962 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.413 0.587 36 H 0.114 0.886 37 H 0.105 0.895 38 H 0.271 0.729 39 H 0.417 0.583 40 H 0.166 0.834 41 H 0.133 0.867 42 H 0.210 0.790 43 H 0.165 0.835 44 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.012 -3.977 -8.595 27.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.166 4.166 3 C 0.046 3.954 4 H 0.099 0.901 5 C -0.007 4.007 6 N -0.366 5.366 7 C 0.323 3.677 8 O -0.440 6.440 9 C -0.282 4.282 10 S 0.077 5.923 11 C -0.694 4.694 12 H 0.101 0.899 13 C -0.192 4.192 14 N -0.547 5.547 15 Si 0.818 3.182 16 H -0.189 1.189 17 H -0.206 1.206 18 H -0.185 1.185 19 N -0.367 5.367 20 C 0.285 3.715 21 O -0.422 6.422 22 C -0.015 4.015 23 N -0.155 5.155 24 C -0.091 4.091 25 C -0.316 4.316 26 C -0.162 4.162 27 N -0.139 5.139 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.250 0.750 36 H 0.133 0.867 37 H 0.123 0.877 38 H 0.080 0.920 39 H 0.255 0.745 40 H 0.184 0.816 41 H 0.151 0.849 42 H 0.227 0.773 43 H 0.183 0.817 44 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -24.578 -6.816 -7.439 26.569 hybrid contribution -0.697 2.911 -0.460 3.029 sum -25.276 -3.905 -7.899 26.768 Atomic orbital electron populations 1.21660 0.95511 1.00566 1.01424 1.21868 0.95956 0.94805 1.03980 1.21088 0.92042 0.94694 0.87618 0.90088 1.21677 0.92148 0.83282 1.03559 1.45683 1.05990 1.10364 1.74579 1.20000 0.82658 0.89761 0.75328 1.90710 1.57050 1.47069 1.49161 1.23374 1.00941 0.97050 1.06793 1.85587 0.99468 1.11850 1.95419 1.23167 0.96080 0.92600 1.57528 0.89872 1.26108 0.94806 1.04332 0.93916 1.70172 1.00018 1.37173 1.47373 0.85029 0.77290 0.76364 0.79484 1.18862 1.20582 1.18459 1.45887 1.16313 1.57483 1.17054 1.20924 0.81743 0.78760 0.90026 1.90817 1.51471 1.58720 1.41228 1.21825 0.80011 1.03372 0.96335 1.48295 1.06808 1.07108 1.53303 1.23213 0.97497 0.87930 1.00501 1.21859 0.95280 0.99533 1.14909 1.24349 0.99231 0.92780 0.99801 1.77393 0.92660 1.21793 1.22049 0.94286 0.93727 0.92823 0.90054 0.89819 0.90075 0.90536 0.75048 0.86750 0.87679 0.92034 0.74545 0.81626 0.84890 0.77319 0.81733 0.78775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 8.51 71.98 0.61 -1.86 16 2 C -0.13 -1.75 5.61 30.59 0.17 -1.58 16 3 C 0.15 2.13 2.42 44.99 0.11 2.24 16 4 H 0.08 1.48 7.58 -2.39 -0.02 1.46 16 5 C 0.12 2.03 5.23 86.38 0.45 2.48 16 6 N -0.71 -14.67 5.39 -463.07 -2.50 -17.17 16 7 C 0.54 17.61 7.85 87.65 0.69 18.30 16 8 O -0.56 -23.91 15.86 -3.01 -0.05 -23.96 16 9 C -0.13 -4.73 6.16 71.23 0.44 -4.29 16 10 S -0.15 -8.00 20.57 -56.49 -1.16 -9.17 16 11 C -0.55 -30.12 9.50 67.95 0.65 -29.47 16 12 H 0.08 4.22 7.80 -2.91 -0.02 4.20 16 13 C 0.01 0.73 5.49 84.86 0.47 1.20 16 14 N -0.91 -54.84 13.22 21.65 0.29 -54.56 16 15 Si 1.00 42.37 29.55 68.60 2.03 44.39 16 16 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 17 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 18 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 19 N -0.71 -7.48 4.47 -442.54 -1.98 -9.46 16 20 C 0.50 7.46 6.43 87.66 0.56 8.03 16 21 O -0.55 -13.57 12.86 -3.03 -0.04 -13.61 16 22 C 0.11 0.98 6.99 85.63 0.60 1.58 16 23 N -0.37 -6.14 3.39 -351.78 -1.19 -7.34 16 24 C 0.05 0.69 11.45 83.54 0.96 1.64 16 25 C -0.29 -4.24 10.80 21.99 0.24 -4.00 16 26 C 0.02 0.46 12.03 85.24 1.03 1.49 16 27 N -0.32 -7.33 11.66 -57.02 -0.66 -7.99 16 28 H 0.04 0.87 7.85 -2.39 -0.02 0.85 16 29 H 0.04 0.95 5.65 -2.38 -0.01 0.93 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 35 H 0.41 6.34 8.14 -92.71 -0.75 5.58 16 36 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 37 H 0.10 3.50 8.14 -2.39 -0.02 3.49 16 38 H 0.27 15.19 8.31 -92.70 -0.77 14.42 16 39 H 0.42 2.28 8.60 -92.71 -0.80 1.48 16 40 H 0.17 0.10 8.07 -2.39 -0.02 0.09 16 41 H 0.13 0.68 8.14 -2.39 -0.02 0.67 16 42 H 0.21 0.89 8.06 -2.91 -0.02 0.87 16 43 H 0.17 1.64 8.06 -2.91 -0.02 1.61 16 44 H 0.20 2.60 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -87.47 388.07 1.18 -86.30 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -0.52 Total: 16.81 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: 6.96 Total: -4.24 kcal Atomic # 7 Polarization: -90.47 SS G_CDS: -6.05 Total: -96.52 kcal Atomic # 8 Polarization: -37.49 SS G_CDS: -0.09 Total: -37.57 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 16 Polarization: -8.00 SS G_CDS: -1.16 Total: -9.17 kcal Total: -87.47 1.18 -86.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721452051.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.007 kcal (2) G-P(sol) polarization free energy of solvation -87.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds