Wall clock time and date at job start Sat Apr 11 2020 06:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46976 * 2 1 4 4 N 1.46893 * 109.47269 * 119.99852 * 2 1 3 5 5 C 1.46897 * 111.00145 * 85.00126 * 4 2 1 6 6 C 1.50698 * 109.47305 * 179.97438 * 5 4 2 7 7 C 1.38271 * 119.99018 * 270.27762 * 6 5 4 8 8 C 1.38219 * 120.05287 * 180.27975 * 7 6 5 9 9 C 1.38227 * 120.02402 * 359.44048 * 8 7 6 10 10 C 1.50699 * 120.01020 * 180.30126 * 9 8 7 11 11 N 1.46501 * 109.47117 * 105.00362 * 10 9 8 12 12 C 1.34768 * 120.00130 * 179.97438 * 11 10 9 13 13 O 1.21279 * 120.00052 * 359.97438 * 12 11 10 14 14 C 1.50702 * 120.00343 * 180.02562 * 12 11 10 15 15 S 1.80992 * 109.47356 * 179.97438 * 14 12 11 16 16 C 1.76205 * 100.00181 * 179.97438 * 15 14 12 17 17 H 1.07997 * 119.99656 * 0.02562 * 16 15 14 18 18 C 1.38793 * 120.00319 * 179.97438 * 16 15 14 19 19 N 1.31629 * 119.99830 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00088 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46914 * 90.00389 * 20 18 16 22 22 H 1.48502 * 109.47034 * 210.00077 * 20 18 16 23 23 H 1.48503 * 109.47165 * 329.99950 * 20 18 16 24 24 C 1.38435 * 119.97401 * 0.28161 * 9 8 7 25 25 F 1.35097 * 120.02386 * 180.02562 * 24 9 8 26 26 C 1.38173 * 119.98826 * 90.00151 * 6 5 4 27 27 H 1.09001 * 109.46913 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47456 * 300.00012 * 1 2 3 29 29 H 1.09003 * 109.47346 * 60.00373 * 1 2 3 30 30 H 1.08999 * 109.47443 * 240.00447 * 2 1 3 31 31 H 1.08995 * 109.46951 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.46778 * 299.99974 * 3 2 1 33 33 H 1.08993 * 109.47038 * 59.99731 * 3 2 1 34 34 H 1.00906 * 111.00199 * 208.95380 * 4 2 1 35 35 H 1.09004 * 109.47361 * 60.00324 * 5 4 2 36 36 H 1.09000 * 109.46937 * 300.00161 * 5 4 2 37 37 H 1.08000 * 119.97453 * 359.97438 * 7 6 5 38 38 H 1.08002 * 119.99072 * 179.72656 * 8 7 6 39 39 H 1.09002 * 109.46878 * 225.00273 * 10 9 8 40 40 H 1.09001 * 109.47486 * 344.99963 * 10 9 8 41 41 H 0.96998 * 119.99558 * 359.97438 * 11 10 9 42 42 H 1.09002 * 109.47063 * 300.00104 * 14 12 11 43 43 H 1.09001 * 109.47166 * 59.99711 * 14 12 11 44 44 H 0.97005 * 120.00004 * 179.97438 * 19 18 16 45 45 H 1.08004 * 120.01046 * 0.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0825 -2.1437 0.9807 6 6 2.5886 -2.8185 2.2295 7 6 3.9457 -3.0142 2.4078 8 6 4.4109 -3.6382 3.5500 9 6 3.5205 -4.0568 4.5209 10 6 4.0286 -4.7310 5.7692 11 7 3.9551 -3.7952 6.8940 12 6 4.3589 -4.1823 8.1201 13 8 4.7826 -5.3055 8.2925 14 6 4.2828 -3.2198 9.2773 15 16 4.8917 -4.0300 10.7769 16 6 4.6961 -2.7166 11.9352 17 1 4.2979 -1.7663 11.6118 18 6 5.0527 -2.9038 13.2634 19 7 5.5375 -4.0622 13.6577 20 14 4.8445 -1.5116 14.4915 21 1 3.4931 -1.5883 15.1022 22 1 5.8753 -1.6305 15.5539 23 1 4.9998 -0.2095 13.7947 24 6 2.1620 -3.8562 4.3461 25 9 1.2909 -4.2645 5.2946 26 6 1.6967 -3.2362 3.1986 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5137 -0.8900 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 2.9174 -0.3306 1.4847 35 1 2.7590 -2.3575 0.1531 36 1 1.0871 -2.5186 0.7425 37 1 4.6425 -2.6838 1.6516 38 1 5.4709 -3.7946 3.6862 39 1 3.4159 -5.6065 5.9844 40 1 5.0634 -5.0395 5.6202 41 1 3.6159 -2.8970 6.7562 42 1 4.8955 -2.3443 9.0626 43 1 3.2480 -2.9115 9.4260 44 1 5.7871 -4.1930 14.5860 45 1 0.6370 -3.0795 3.0610 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725831659.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:22 Heat of formation + Delta-G solvation = -69.698335 kcal Electronic energy + Delta-G solvation = -25593.496883 eV Core-core repulsion = 21650.971749 eV Total energy + Delta-G solvation = -3942.525134 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.08697 -39.97255 -38.98520 -37.64691 -35.03786 -33.04995 -32.40216 -31.09173 -30.72513 -29.16720 -27.78316 -26.65912 -25.44456 -23.98036 -23.23975 -21.31425 -21.07528 -20.37515 -17.96249 -17.42433 -17.10308 -16.54689 -16.29030 -16.20821 -15.78276 -15.67943 -15.14454 -15.02518 -14.85618 -14.77742 -14.26783 -13.91610 -13.86516 -13.33300 -13.25235 -13.12545 -12.99715 -12.81314 -12.59011 -12.54536 -12.40507 -12.06436 -12.03050 -11.71391 -11.65009 -11.34357 -11.22335 -11.04004 -10.99820 -10.74162 -9.79730 -9.59692 -9.22731 -9.06744 -9.04455 -8.92033 -8.82063 -8.20684 -6.46986 -6.19059 -3.89356 0.65698 0.85662 2.93682 3.12266 3.18869 3.24544 3.30894 3.38543 3.71669 3.84006 3.91652 4.21096 4.23074 4.31410 4.40625 4.42250 4.57857 4.71386 4.80342 4.81916 5.00615 5.06242 5.16027 5.17082 5.17624 5.33631 5.34832 5.36389 5.39804 5.43734 5.59112 5.65305 5.69617 5.74629 5.79920 5.83859 5.92395 6.01894 6.04882 6.18072 6.45765 6.52417 6.58942 6.84376 7.62344 7.71518 8.38035 8.62473 9.26252 10.88371 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015657 B = 0.001882 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.945648 B =14877.747805 C =15905.998744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.078 3.922 3 C -0.156 4.156 4 N -0.681 5.681 5 C 0.098 3.902 6 C -0.053 4.053 7 C -0.127 4.127 8 C -0.071 4.071 9 C -0.136 4.136 10 C 0.164 3.836 11 N -0.734 5.734 12 C 0.534 3.466 13 O -0.517 6.517 14 C -0.153 4.153 15 S -0.060 6.060 16 C -0.535 4.535 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C 0.116 3.884 25 F -0.130 7.130 26 C -0.134 4.134 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.044 0.956 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.345 0.655 35 H 0.043 0.957 36 H 0.083 0.917 37 H 0.127 0.873 38 H 0.136 0.864 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.399 0.601 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.268 0.732 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.391 7.509 -32.341 34.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.032 4.032 3 C -0.213 4.213 4 N -0.314 5.314 5 C -0.030 4.030 6 C -0.054 4.054 7 C -0.146 4.146 8 C -0.090 4.090 9 C -0.137 4.137 10 C 0.040 3.960 11 N -0.389 5.389 12 C 0.320 3.680 13 O -0.392 6.392 14 C -0.303 4.303 15 S 0.167 5.833 16 C -0.683 4.683 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.197 1.197 24 C 0.096 3.904 25 F -0.109 7.109 26 C -0.153 4.153 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.163 0.837 35 H 0.061 0.939 36 H 0.102 0.898 37 H 0.145 0.855 38 H 0.154 0.846 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.232 0.768 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.078 0.922 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.262 5.474 -31.573 32.856 hybrid contribution -0.219 2.451 0.098 2.463 sum -7.481 7.924 -31.475 33.308 Atomic orbital electron populations 1.21809 0.94348 1.01882 1.01901 1.21538 0.96288 0.94368 0.90973 1.21981 1.00832 0.95661 1.02849 1.60551 1.33824 1.02492 1.34535 1.20931 1.01169 0.87961 0.92962 1.19582 0.92918 0.97281 0.95613 1.21071 0.94834 1.00423 0.98226 1.20986 0.99755 0.95806 0.92431 1.20053 0.91911 1.03397 0.98371 1.20028 1.01859 0.92113 0.81989 1.46022 1.68211 1.16584 1.08051 1.20317 0.76356 0.88470 0.82865 1.90702 1.44216 1.20665 1.83578 1.23529 1.05488 1.01865 0.99445 1.85382 1.82863 1.19442 0.95631 1.22873 1.49798 1.00051 0.95594 0.90916 1.24992 0.94556 0.96517 0.97547 1.70021 1.40227 1.22735 1.17322 0.86166 0.78083 0.81197 0.80041 1.20272 1.20767 1.19700 1.17595 0.86733 0.98609 0.87430 1.91555 1.68559 1.87996 1.62755 1.20987 1.01163 1.00339 0.92835 0.92838 0.91804 0.92570 0.93848 0.92701 0.91800 0.91513 0.83658 0.93872 0.89820 0.85469 0.84574 0.90409 0.90181 0.76759 0.89181 0.89153 0.92208 0.84526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.72 9.42 37.16 0.35 -0.38 16 2 C 0.08 0.38 3.22 -67.71 -0.22 0.17 16 3 C -0.16 -0.67 9.18 37.16 0.34 -0.33 16 4 N -0.68 -3.96 6.30 -107.99 -0.68 -4.64 16 5 C 0.10 0.54 5.61 -4.98 -0.03 0.52 16 6 C -0.05 -0.38 5.39 -104.63 -0.56 -0.94 16 7 C -0.13 -0.84 9.70 -39.58 -0.38 -1.23 16 8 C -0.07 -0.57 9.67 -39.59 -0.38 -0.95 16 9 C -0.14 -1.37 5.25 -104.55 -0.55 -1.92 16 10 C 0.16 2.06 5.49 -5.19 -0.03 2.03 16 11 N -0.73 -10.57 5.55 -61.47 -0.34 -10.91 16 12 C 0.53 10.32 7.85 -10.99 -0.09 10.24 16 13 O -0.52 -12.03 15.86 5.56 0.09 -11.94 16 14 C -0.15 -3.18 6.16 36.01 0.22 -2.95 16 15 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 16 C -0.53 -15.45 9.50 30.94 0.29 -15.16 16 17 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 18 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 19 N -0.87 -26.43 13.22 55.49 0.73 -25.69 16 20 Si 0.92 21.65 29.55 -169.99 -5.02 16.63 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 C 0.12 1.22 7.25 -39.42 -0.29 0.94 16 25 F -0.13 -1.65 16.76 2.25 0.04 -1.61 16 26 C -0.13 -1.16 9.68 -39.52 -0.38 -1.54 16 27 H 0.05 0.28 7.45 -51.93 -0.39 -0.10 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.04 0.20 7.80 -51.93 -0.41 -0.20 16 31 H 0.05 0.21 8.12 -51.93 -0.42 -0.21 16 32 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.34 1.87 8.34 -39.29 -0.33 1.54 16 35 H 0.04 0.20 8.00 -51.93 -0.42 -0.22 16 36 H 0.08 0.46 7.38 -51.93 -0.38 0.08 16 37 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 38 H 0.14 0.89 8.00 -52.49 -0.42 0.47 16 39 H 0.08 1.08 8.08 -51.93 -0.42 0.66 16 40 H 0.08 0.98 7.95 -51.93 -0.41 0.57 16 41 H 0.40 4.86 8.46 -40.82 -0.35 4.51 16 42 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 43 H 0.09 1.76 8.14 -51.91 -0.42 1.34 16 44 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 45 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 LS Contribution 398.65 15.07 6.01 6.01 Total: -1.00 -34.58 398.65 -10.05 -44.63 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -6.86 Total: 0.87 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -1.80 Total: -9.49 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: -0.29 Total: -41.24 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.09 Total: -11.94 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.58 -10.05 -44.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725831659.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.064 kcal (2) G-P(sol) polarization free energy of solvation -34.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds