Wall clock time and date at job start Sat Apr 11 2020 06:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46976 * 2 1 4 4 N 1.46893 * 109.47269 * 119.99852 * 2 1 3 5 5 C 1.46897 * 111.00145 * 85.00126 * 4 2 1 6 6 C 1.50698 * 109.47305 * 179.97438 * 5 4 2 7 7 C 1.38271 * 119.99018 * 270.27762 * 6 5 4 8 8 C 1.38219 * 120.05287 * 180.27975 * 7 6 5 9 9 C 1.38227 * 120.02402 * 359.44048 * 8 7 6 10 10 C 1.50699 * 120.01020 * 180.30126 * 9 8 7 11 11 N 1.46501 * 109.47117 * 105.00362 * 10 9 8 12 12 C 1.34768 * 120.00130 * 179.97438 * 11 10 9 13 13 O 1.21279 * 120.00052 * 359.97438 * 12 11 10 14 14 C 1.50702 * 120.00343 * 180.02562 * 12 11 10 15 15 S 1.80992 * 109.47356 * 179.97438 * 14 12 11 16 16 C 1.76205 * 100.00181 * 179.97438 * 15 14 12 17 17 H 1.07997 * 119.99656 * 0.02562 * 16 15 14 18 18 C 1.38793 * 120.00319 * 179.97438 * 16 15 14 19 19 N 1.31629 * 119.99830 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00088 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46914 * 90.00389 * 20 18 16 22 22 H 1.48502 * 109.47034 * 210.00077 * 20 18 16 23 23 H 1.48503 * 109.47165 * 329.99950 * 20 18 16 24 24 C 1.38435 * 119.97401 * 0.28161 * 9 8 7 25 25 F 1.35097 * 120.02386 * 180.02562 * 24 9 8 26 26 C 1.38173 * 119.98826 * 90.00151 * 6 5 4 27 27 H 1.09001 * 109.46913 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47456 * 300.00012 * 1 2 3 29 29 H 1.09003 * 109.47346 * 60.00373 * 1 2 3 30 30 H 1.08999 * 109.47443 * 240.00447 * 2 1 3 31 31 H 1.08995 * 109.46951 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.46778 * 299.99974 * 3 2 1 33 33 H 1.08993 * 109.47038 * 59.99731 * 3 2 1 34 34 H 1.00906 * 111.00199 * 208.95380 * 4 2 1 35 35 H 1.09004 * 109.47361 * 60.00324 * 5 4 2 36 36 H 1.09000 * 109.46937 * 300.00161 * 5 4 2 37 37 H 1.08000 * 119.97453 * 359.97438 * 7 6 5 38 38 H 1.08002 * 119.99072 * 179.72656 * 8 7 6 39 39 H 1.09002 * 109.46878 * 225.00273 * 10 9 8 40 40 H 1.09001 * 109.47486 * 344.99963 * 10 9 8 41 41 H 0.96998 * 119.99558 * 359.97438 * 11 10 9 42 42 H 1.09002 * 109.47063 * 300.00104 * 14 12 11 43 43 H 1.09001 * 109.47166 * 59.99711 * 14 12 11 44 44 H 0.97005 * 120.00004 * 179.97438 * 19 18 16 45 45 H 1.08004 * 120.01046 * 0.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0825 -2.1437 0.9807 6 6 2.5886 -2.8185 2.2295 7 6 3.9457 -3.0142 2.4078 8 6 4.4109 -3.6382 3.5500 9 6 3.5205 -4.0568 4.5209 10 6 4.0286 -4.7310 5.7692 11 7 3.9551 -3.7952 6.8940 12 6 4.3589 -4.1823 8.1201 13 8 4.7826 -5.3055 8.2925 14 6 4.2828 -3.2198 9.2773 15 16 4.8917 -4.0300 10.7769 16 6 4.6961 -2.7166 11.9352 17 1 4.2979 -1.7663 11.6118 18 6 5.0527 -2.9038 13.2634 19 7 5.5375 -4.0622 13.6577 20 14 4.8445 -1.5116 14.4915 21 1 3.4931 -1.5883 15.1022 22 1 5.8753 -1.6305 15.5539 23 1 4.9998 -0.2095 13.7947 24 6 2.1620 -3.8562 4.3461 25 9 1.2909 -4.2645 5.2946 26 6 1.6967 -3.2362 3.1986 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5137 -0.8900 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 2.9174 -0.3306 1.4847 35 1 2.7590 -2.3575 0.1531 36 1 1.0871 -2.5186 0.7425 37 1 4.6425 -2.6838 1.6516 38 1 5.4709 -3.7946 3.6862 39 1 3.4159 -5.6065 5.9844 40 1 5.0634 -5.0395 5.6202 41 1 3.6159 -2.8970 6.7562 42 1 4.8955 -2.3443 9.0626 43 1 3.2480 -2.9115 9.4260 44 1 5.7871 -4.1930 14.5860 45 1 0.6370 -3.0795 3.0610 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725831659.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:21 Heat of formation + Delta-G solvation = -92.835447 kcal Electronic energy + Delta-G solvation = -25594.500184 eV Core-core repulsion = 21650.971749 eV Total energy + Delta-G solvation = -3943.528434 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.95593 -40.89278 -40.19972 -38.13556 -36.15299 -34.58837 -33.85049 -31.86230 -31.56957 -30.38498 -28.18302 -27.78165 -27.33960 -24.72691 -23.89351 -22.00487 -21.85515 -21.45289 -19.90227 -18.31083 -17.89245 -17.81781 -17.46937 -16.88218 -16.74823 -16.62994 -16.47212 -16.38646 -15.94070 -15.69857 -15.39953 -14.87006 -14.73635 -14.56385 -14.47177 -14.32282 -13.86304 -13.57443 -13.43801 -13.26099 -13.17089 -13.05638 -12.90360 -12.88976 -12.66091 -12.59768 -12.51557 -12.06279 -11.85898 -11.73675 -11.70817 -11.14583 -11.09998 -10.29517 -10.23454 -9.94841 -9.70546 -9.34123 -8.67412 -8.34831 -6.13197 -0.03576 0.21023 1.26492 1.42554 1.46550 1.56383 1.57551 2.19194 2.27184 2.61112 2.99171 3.16729 3.31061 3.34624 3.44899 3.66137 3.84261 3.94876 4.04089 4.08729 4.22303 4.24711 4.27583 4.44999 4.48114 4.48849 4.50676 4.59672 4.64350 4.83873 4.87651 4.99457 4.99905 5.04326 5.05305 5.11491 5.26962 5.32510 5.34520 5.41714 5.42567 5.47307 5.85399 6.09898 6.19724 6.40745 6.46987 7.06264 7.16175 8.74434 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015657 B = 0.001882 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.945648 B =14877.747805 C =15905.998744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.078 3.922 3 C -0.153 4.153 4 N -0.692 5.692 5 C 0.101 3.899 6 C -0.045 4.045 7 C -0.116 4.116 8 C -0.068 4.068 9 C -0.145 4.145 10 C 0.165 3.835 11 N -0.710 5.710 12 C 0.536 3.464 13 O -0.563 6.563 14 C -0.130 4.130 15 S -0.148 6.148 16 C -0.547 4.547 17 H 0.082 0.918 18 C 0.013 3.987 19 N -0.911 5.911 20 Si 1.000 3.000 21 H -0.268 1.268 22 H -0.277 1.277 23 H -0.258 1.258 24 C 0.094 3.906 25 F -0.150 7.150 26 C -0.138 4.138 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.348 0.652 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.158 0.842 38 H 0.153 0.847 39 H 0.060 0.940 40 H 0.086 0.914 41 H 0.412 0.588 42 H 0.112 0.888 43 H 0.106 0.894 44 H 0.271 0.729 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.398 9.989 -34.578 36.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.031 4.031 3 C -0.210 4.210 4 N -0.325 5.325 5 C -0.027 4.027 6 C -0.046 4.046 7 C -0.134 4.134 8 C -0.087 4.087 9 C -0.146 4.146 10 C 0.042 3.958 11 N -0.364 5.364 12 C 0.322 3.678 13 O -0.441 6.441 14 C -0.281 4.281 15 S 0.079 5.921 16 C -0.695 4.695 17 H 0.100 0.900 18 C -0.192 4.192 19 N -0.547 5.547 20 Si 0.821 3.179 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.182 1.182 24 C 0.074 3.926 25 F -0.129 7.129 26 C -0.157 4.157 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.167 0.833 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.175 0.825 38 H 0.171 0.829 39 H 0.078 0.922 40 H 0.104 0.896 41 H 0.249 0.751 42 H 0.130 0.870 43 H 0.125 0.875 44 H 0.080 0.920 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.292 7.986 -33.865 35.550 hybrid contribution -0.259 1.697 0.579 1.812 sum -7.552 9.683 -33.285 35.478 Atomic orbital electron populations 1.21809 0.94751 1.01623 1.01726 1.21552 0.95941 0.94693 0.90903 1.21954 1.01183 0.95211 1.02687 1.60531 1.34153 1.02631 1.35204 1.20931 1.01576 0.87725 0.92481 1.19815 0.93014 0.96261 0.95535 1.21388 0.95076 0.98853 0.98080 1.21206 1.00237 0.95111 0.92120 1.19847 0.92071 1.04764 0.97948 1.20067 1.02014 0.91446 0.82290 1.45806 1.66102 1.17472 1.06978 1.20061 0.76372 0.87454 0.83875 1.90689 1.46727 1.22318 1.84400 1.23369 1.06268 1.01985 0.96456 1.85548 1.84042 1.22300 1.00184 1.23206 1.49966 1.00192 0.96149 0.89951 1.26139 0.93807 0.99454 0.99778 1.70184 1.41307 1.25243 1.17972 0.84941 0.78300 0.77678 0.76976 1.19369 1.20166 1.18175 1.17852 0.86739 1.00033 0.87964 1.91502 1.69232 1.88487 1.63670 1.21111 1.01840 1.00191 0.92568 0.93129 0.93086 0.91656 0.93079 0.92102 0.91110 0.92534 0.83326 0.92166 0.89863 0.82477 0.82931 0.92184 0.89614 0.75145 0.86997 0.87539 0.91961 0.84141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.42 71.98 0.68 -0.56 16 2 C 0.08 0.60 3.22 44.92 0.14 0.75 16 3 C -0.15 -1.01 9.18 71.98 0.66 -0.35 16 4 N -0.69 -6.38 6.30 -495.58 -3.12 -9.50 16 5 C 0.10 0.83 5.61 85.56 0.48 1.31 16 6 C -0.05 -0.52 5.39 -19.87 -0.11 -0.63 16 7 C -0.12 -1.14 9.70 22.27 0.22 -0.92 16 8 C -0.07 -0.91 9.67 22.26 0.22 -0.69 16 9 C -0.14 -2.75 5.25 -19.82 -0.10 -2.86 16 10 C 0.16 4.10 5.49 85.63 0.47 4.57 16 11 N -0.71 -19.97 5.55 -466.79 -2.59 -22.56 16 12 C 0.54 20.82 7.85 87.66 0.69 21.50 16 13 O -0.56 -26.94 15.86 -3.03 -0.05 -26.99 16 14 C -0.13 -5.35 6.16 71.24 0.44 -4.92 16 15 S -0.15 -8.39 20.57 -56.49 -1.16 -9.55 16 16 C -0.55 -31.79 9.50 67.95 0.65 -31.15 16 17 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 18 C 0.01 0.75 5.49 84.86 0.47 1.21 16 19 N -0.91 -56.55 13.22 21.65 0.29 -56.27 16 20 Si 1.00 44.15 29.55 68.60 2.03 46.18 16 21 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 22 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 23 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 24 C 0.09 1.92 7.25 22.37 0.16 2.08 16 25 F -0.15 -3.87 16.76 44.97 0.75 -3.12 16 26 C -0.14 -2.20 9.68 22.31 0.22 -1.98 16 27 H 0.05 0.46 7.45 -2.39 -0.02 0.45 16 28 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.05 0.33 7.80 -2.39 -0.02 0.31 16 31 H 0.06 0.33 8.12 -2.39 -0.02 0.31 16 32 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.35 2.80 8.34 -89.69 -0.75 2.05 16 35 H 0.06 0.32 8.00 -2.38 -0.02 0.30 16 36 H 0.08 0.72 7.38 -2.39 -0.02 0.70 16 37 H 0.16 0.66 8.06 -2.91 -0.02 0.64 16 38 H 0.15 1.52 8.00 -2.91 -0.02 1.50 16 39 H 0.06 1.72 8.08 -2.39 -0.02 1.71 16 40 H 0.09 2.05 7.95 -2.39 -0.02 2.03 16 41 H 0.41 9.44 8.46 -92.71 -0.78 8.65 16 42 H 0.11 4.12 8.14 -2.39 -0.02 4.10 16 43 H 0.11 4.05 8.14 -2.40 -0.02 4.03 16 44 H 0.27 15.61 8.31 -92.70 -0.77 14.84 16 45 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -77.27 398.65 0.89 -76.38 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: -0.52 Total: 18.06 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: 5.27 Total: -12.63 kcal Atomic # 7 Polarization: -82.90 SS G_CDS: -5.42 Total: -88.32 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -0.05 Total: -26.99 kcal Atomic # 9 Polarization: -3.87 SS G_CDS: 0.75 Total: -3.12 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.16 Total: -9.55 kcal Total: -77.27 0.89 -76.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725831659.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.454 kcal (2) G-P(sol) polarization free energy of solvation -77.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds