Wall clock time and date at job start Sat Apr 11 2020 06:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 110.79842 * 2 1 4 4 C 1.55211 * 110.78143 * 236.58879 * 2 1 3 5 5 N 1.48124 * 103.26072 * 279.10687 * 4 2 1 6 6 C 1.34779 * 127.03087 * 140.64727 * 5 4 2 7 7 O 1.21284 * 119.99729 * 180.02562 * 6 5 4 8 8 C 1.50697 * 120.00242 * 0.04543 * 6 5 4 9 9 S 1.81399 * 109.47169 * 180.02562 * 8 6 5 10 10 C 1.81405 * 102.99756 * 179.97438 * 9 8 6 11 11 C 1.47202 * 109.46799 * 180.02562 * 10 9 8 12 12 N 9.45127 * 79.00702 * 225.88685 * 2 1 3 13 13 C 1.47484 * 105.93212 * 320.68491 * 5 4 2 14 14 C 1.54000 * 107.08662 * 25.44537 * 13 5 4 15 15 H 1.09002 * 110.32853 * 239.80250 * 14 13 5 16 16 N 1.46895 * 110.32456 * 117.69085 * 14 13 5 17 17 C 1.46897 * 111.00467 * 87.83665 * 16 14 13 18 18 C 1.50695 * 109.47393 * 179.97438 * 17 16 14 19 19 O 1.21291 * 120.00079 * 359.97438 * 18 17 16 20 20 N 1.34781 * 119.99946 * 180.02562 * 18 17 16 21 21 C 1.37100 * 120.00149 * 180.02562 * 20 18 17 22 22 H 1.07998 * 119.99932 * 359.97438 * 21 20 18 23 23 C 1.38940 * 120.00135 * 179.97438 * 21 20 18 24 24 N 1.31413 * 119.99984 * 179.97438 * 23 21 20 25 25 Si 1.86809 * 120.00064 * 359.97438 * 23 21 20 26 26 H 1.48495 * 109.46927 * 89.99908 * 25 23 21 27 27 H 1.48497 * 109.47100 * 209.99948 * 25 23 21 28 28 H 1.48495 * 109.46813 * 330.00128 * 25 23 21 29 29 H 1.08998 * 109.47323 * 296.70745 * 1 2 3 30 30 H 1.08993 * 109.47506 * 56.70641 * 1 2 3 31 31 H 1.09000 * 109.47251 * 176.70898 * 1 2 3 32 32 H 1.08998 * 110.67933 * 160.65579 * 4 2 1 33 33 H 1.08991 * 110.77892 * 37.60575 * 4 2 1 34 34 H 1.09004 * 109.46696 * 299.99742 * 8 6 5 35 35 H 1.08993 * 109.47369 * 59.99534 * 8 6 5 36 36 H 1.09002 * 109.46819 * 299.99451 * 10 9 8 37 37 H 1.08990 * 109.47372 * 59.99807 * 10 9 8 38 38 H 1.09008 * 109.90926 * 266.08190 * 13 5 4 39 39 H 1.09001 * 109.91041 * 144.81251 * 13 5 4 40 40 H 1.00904 * 111.00063 * 211.79131 * 16 14 13 41 41 H 1.09003 * 109.47002 * 300.00405 * 17 16 14 42 42 H 1.09000 * 109.46905 * 59.99385 * 17 16 14 43 43 H 0.97000 * 120.00039 * 359.97438 * 20 18 17 44 44 H 0.97003 * 120.00020 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9170 1.0190 0.0000 4 6 2.0806 -0.7991 -1.2113 5 7 1.9878 -2.2069 -0.7602 6 6 1.6227 -3.2735 -1.4988 7 8 1.5902 -4.3767 -0.9960 8 6 1.2553 -3.0954 -2.9494 9 16 0.8129 -4.7035 -3.6629 10 6 0.4079 -4.2895 -5.3820 11 6 0.0220 -5.5132 -6.1034 12 7 -0.2723 -6.4581 -6.6612 13 6 2.3758 -2.2024 0.6627 14 6 2.0775 -0.7937 1.2086 15 1 2.9910 -0.3313 1.5828 16 7 1.0682 -0.8624 2.2737 17 6 1.6973 -1.0891 3.5816 18 6 0.6332 -1.1530 4.6467 19 8 -0.5345 -1.0220 4.3459 20 7 0.9791 -1.3547 5.9336 21 6 0.0109 -1.4133 6.9026 22 1 -1.0289 -1.2975 6.6347 23 6 0.3675 -1.6218 8.2292 24 7 -0.5605 -1.6775 9.1580 25 14 2.1660 -1.8229 8.6925 26 1 2.7485 -0.4930 9.0041 27 1 2.2748 -2.7024 9.8840 28 1 2.9042 -2.4330 7.5577 29 1 -0.3634 0.4619 0.9180 30 1 -0.3634 0.5641 -0.8589 31 1 -0.3634 -1.0260 -0.0590 32 1 3.1168 -0.5273 -1.4127 33 1 1.4630 -0.6368 -2.0946 34 1 0.4056 -2.4172 -3.0283 35 1 2.1044 -2.6785 -3.4907 36 1 -0.4204 -3.5813 -5.3997 37 1 1.2781 -3.8430 -5.8629 38 1 3.4397 -2.4201 0.7581 39 1 1.7923 -2.9436 1.2089 40 1 0.4983 -0.0297 2.2861 41 1 2.2487 -2.0292 3.5614 42 1 2.3828 -0.2707 3.8018 43 1 1.9130 -1.4591 6.1742 44 1 -0.3116 -1.8234 10.0841 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733838709.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:29 Heat of formation + Delta-G solvation = -14.854768 kcal Electronic energy + Delta-G solvation = -26265.492101 eV Core-core repulsion = 22345.265125 eV Total energy + Delta-G solvation = -3920.226977 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.51523 -38.72324 -38.00824 -37.12723 -34.91520 -33.89214 -32.32970 -31.65220 -31.25923 -30.62315 -28.62574 -27.04483 -26.24779 -24.02926 -22.76853 -20.24625 -19.75848 -19.40180 -18.68992 -18.30747 -17.51304 -17.00396 -16.71971 -16.05443 -15.83154 -15.54297 -15.37348 -15.25679 -14.76340 -14.67608 -14.51517 -13.98966 -13.67767 -13.44245 -13.34984 -13.27707 -13.11321 -12.75250 -12.59554 -12.52014 -12.47845 -12.32370 -12.08038 -11.98703 -11.88345 -11.25330 -11.20055 -11.11377 -10.96600 -10.60580 -10.55098 -10.25059 -9.98693 -9.58780 -9.02841 -8.62415 -8.27023 -8.22913 -8.18540 -6.32147 -3.83776 0.46806 1.71803 2.21130 2.26902 2.53732 2.67158 3.02076 3.05258 3.14416 3.24125 3.71430 3.91822 3.95905 4.09254 4.10869 4.35243 4.38422 4.43227 4.54641 4.61752 4.68934 4.81651 4.92178 5.05794 5.10882 5.21418 5.26018 5.38992 5.47602 5.60556 5.62813 5.73613 5.83752 5.86682 5.90245 6.00442 6.25298 6.95087 7.00165 7.16994 7.47012 7.56596 7.79629 8.13020 8.58055 8.93645 9.40962 9.80552 10.80891 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.018909 B = 0.001941 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.393834 B =14424.093440 C =14958.839895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.108 4.108 3 H 0.090 0.910 4 C 0.103 3.897 5 N -0.611 5.611 6 C 0.549 3.451 7 O -0.514 6.514 8 C -0.128 4.128 9 S -0.131 6.131 10 C -0.026 4.026 11 C 0.220 3.780 12 N -0.405 5.405 13 C 0.114 3.886 14 C 0.075 3.925 15 H 0.062 0.938 16 N -0.658 5.658 17 C 0.045 3.955 18 C 0.449 3.551 19 O -0.565 6.565 20 N -0.590 5.590 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.880 5.880 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.269 1.269 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.066 0.934 39 H 0.095 0.905 40 H 0.356 0.644 41 H 0.087 0.913 42 H 0.046 0.954 43 H 0.370 0.630 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.879 6.399 -27.690 30.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.127 4.127 3 H 0.108 0.892 4 C -0.021 4.021 5 N -0.347 5.347 6 C 0.335 3.665 7 O -0.389 6.389 8 C -0.279 4.279 9 S 0.093 5.907 10 C -0.176 4.176 11 C -0.098 4.098 12 N -0.083 5.083 13 C -0.009 4.009 14 C -0.036 4.036 15 H 0.080 0.920 16 N -0.294 5.294 17 C -0.088 4.088 18 C 0.235 3.765 19 O -0.446 6.446 20 N -0.229 5.229 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.520 5.520 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.201 1.201 28 H -0.194 1.194 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.146 0.854 37 H 0.146 0.854 38 H 0.085 0.915 39 H 0.113 0.887 40 H 0.180 0.820 41 H 0.105 0.895 42 H 0.064 0.936 43 H 0.203 0.797 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.361 2.719 -27.885 29.540 hybrid contribution 2.026 2.408 0.486 3.184 sum 11.386 5.127 -27.399 30.110 Atomic orbital electron populations 1.21653 0.92998 1.03133 1.01859 1.22507 0.97806 0.98713 0.93687 0.89185 1.22713 1.01181 0.80481 0.97696 1.48527 1.67114 1.07126 1.11885 1.19062 0.77485 0.83637 0.86311 1.90816 1.52011 1.23878 1.72236 1.23546 1.06560 1.00329 0.97503 1.88217 1.88999 1.10279 1.03158 1.20817 1.06911 0.92689 0.97192 1.27724 0.93985 0.94015 0.94110 1.81294 1.08262 1.09704 1.09060 1.22189 0.99723 0.98601 0.80391 1.22455 0.94553 0.94457 0.92140 0.92002 1.60297 1.21230 1.46011 1.01846 1.21803 0.95967 1.01552 0.89488 1.19664 0.89734 0.84187 0.82908 1.90568 1.19228 1.53763 1.81083 1.42205 1.08453 1.65521 1.06720 1.19428 0.91391 1.46855 0.85742 0.86276 1.25042 0.98019 0.97592 0.95490 1.69622 1.32542 1.48508 1.01368 0.86670 0.84741 0.78876 0.79097 1.19690 1.20149 1.19447 0.91289 0.92900 0.91529 0.90455 0.89933 0.86477 0.86651 0.85359 0.85446 0.91546 0.88710 0.82033 0.89452 0.93585 0.79699 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.50 37.15 0.32 -0.84 16 2 C -0.11 -0.71 3.58 -88.60 -0.32 -1.03 16 3 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 4 C 0.10 0.51 6.41 -1.98 -0.01 0.49 16 5 N -0.61 -5.35 3.19 -169.59 -0.54 -5.90 16 6 C 0.55 5.64 7.91 -10.99 -0.09 5.55 16 7 O -0.51 -7.91 16.20 5.55 0.09 -7.82 16 8 C -0.13 -0.68 5.35 36.00 0.19 -0.49 16 9 S -0.13 -1.01 20.83 -107.50 -2.24 -3.25 16 10 C -0.03 -0.08 6.42 34.37 0.22 0.14 16 11 C 0.22 1.63 15.44 -20.76 -0.32 1.31 16 12 N -0.41 -4.37 18.54 42.15 0.78 -3.59 16 13 C 0.11 1.19 6.71 -2.98 -0.02 1.17 16 14 C 0.08 0.70 3.19 -66.34 -0.21 0.49 16 15 H 0.06 0.50 7.84 -51.93 -0.41 0.09 16 16 N -0.66 -8.93 5.16 -106.55 -0.55 -9.48 16 17 C 0.04 0.68 6.01 -4.98 -0.03 0.65 16 18 C 0.45 9.86 7.82 -10.99 -0.09 9.77 16 19 O -0.56 -14.76 15.78 5.55 0.09 -14.67 16 20 N -0.59 -13.77 5.09 -10.97 -0.06 -13.83 16 21 C -0.31 -8.57 10.16 -14.94 -0.15 -8.72 16 22 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 23 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -25.62 13.96 55.50 0.77 -24.85 16 25 Si 0.88 19.18 27.74 -169.99 -4.71 14.47 16 26 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 27 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 28 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 29 H 0.07 0.69 6.22 -51.93 -0.32 0.37 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.72 8.07 -51.93 -0.42 0.30 16 32 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.08 0.22 7.15 -51.93 -0.37 -0.15 16 34 H 0.12 0.35 7.91 -51.92 -0.41 -0.06 16 35 H 0.12 0.26 8.14 -51.93 -0.42 -0.17 16 36 H 0.13 0.06 8.14 -51.92 -0.42 -0.36 16 37 H 0.13 0.01 8.14 -51.93 -0.42 -0.41 16 38 H 0.07 0.62 8.14 -51.92 -0.42 0.19 16 39 H 0.09 1.34 7.84 -51.93 -0.41 0.93 16 40 H 0.36 4.96 6.01 -39.29 -0.24 4.73 16 41 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.05 0.59 8.07 -51.93 -0.42 0.17 16 43 H 0.37 7.56 5.76 -40.82 -0.24 7.33 16 44 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 385.92 15.07 5.82 5.82 Total: -1.00 -38.29 385.92 -7.32 -45.61 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -6.17 Total: 7.96 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: -0.60 Total: 9.54 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: 0.41 Total: -57.65 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: 0.18 Total: -22.49 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -4.71 Total: 14.47 kcal Atomic # 16 Polarization: -1.01 SS G_CDS: -2.24 Total: -3.25 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -38.29 -7.32 -45.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733838709.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.754 kcal (2) G-P(sol) polarization free energy of solvation -38.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds