Wall clock time and date at job start Sat Apr 11 2020 06:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 110.79842 * 2 1 4 4 C 1.55211 * 110.78143 * 236.58879 * 2 1 3 5 5 N 1.48124 * 103.26072 * 279.10687 * 4 2 1 6 6 C 1.34779 * 127.03087 * 140.64727 * 5 4 2 7 7 O 1.21284 * 119.99729 * 180.02562 * 6 5 4 8 8 C 1.50697 * 120.00242 * 0.04543 * 6 5 4 9 9 S 1.81399 * 109.47169 * 180.02562 * 8 6 5 10 10 C 1.81405 * 102.99756 * 179.97438 * 9 8 6 11 11 C 1.47202 * 109.46799 * 180.02562 * 10 9 8 12 12 N 9.45127 * 79.00702 * 225.88685 * 2 1 3 13 13 C 1.47484 * 105.93212 * 320.68491 * 5 4 2 14 14 C 1.54000 * 107.08662 * 25.44537 * 13 5 4 15 15 H 1.09002 * 110.32853 * 239.80250 * 14 13 5 16 16 N 1.46895 * 110.32456 * 117.69085 * 14 13 5 17 17 C 1.46897 * 111.00467 * 87.83665 * 16 14 13 18 18 C 1.50695 * 109.47393 * 179.97438 * 17 16 14 19 19 O 1.21291 * 120.00079 * 359.97438 * 18 17 16 20 20 N 1.34781 * 119.99946 * 180.02562 * 18 17 16 21 21 C 1.37100 * 120.00149 * 180.02562 * 20 18 17 22 22 H 1.07998 * 119.99932 * 359.97438 * 21 20 18 23 23 C 1.38940 * 120.00135 * 179.97438 * 21 20 18 24 24 N 1.31413 * 119.99984 * 179.97438 * 23 21 20 25 25 Si 1.86809 * 120.00064 * 359.97438 * 23 21 20 26 26 H 1.48495 * 109.46927 * 89.99908 * 25 23 21 27 27 H 1.48497 * 109.47100 * 209.99948 * 25 23 21 28 28 H 1.48495 * 109.46813 * 330.00128 * 25 23 21 29 29 H 1.08998 * 109.47323 * 296.70745 * 1 2 3 30 30 H 1.08993 * 109.47506 * 56.70641 * 1 2 3 31 31 H 1.09000 * 109.47251 * 176.70898 * 1 2 3 32 32 H 1.08998 * 110.67933 * 160.65579 * 4 2 1 33 33 H 1.08991 * 110.77892 * 37.60575 * 4 2 1 34 34 H 1.09004 * 109.46696 * 299.99742 * 8 6 5 35 35 H 1.08993 * 109.47369 * 59.99534 * 8 6 5 36 36 H 1.09002 * 109.46819 * 299.99451 * 10 9 8 37 37 H 1.08990 * 109.47372 * 59.99807 * 10 9 8 38 38 H 1.09008 * 109.90926 * 266.08190 * 13 5 4 39 39 H 1.09001 * 109.91041 * 144.81251 * 13 5 4 40 40 H 1.00904 * 111.00063 * 211.79131 * 16 14 13 41 41 H 1.09003 * 109.47002 * 300.00405 * 17 16 14 42 42 H 1.09000 * 109.46905 * 59.99385 * 17 16 14 43 43 H 0.97000 * 120.00039 * 359.97438 * 20 18 17 44 44 H 0.97003 * 120.00020 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9170 1.0190 0.0000 4 6 2.0806 -0.7991 -1.2113 5 7 1.9878 -2.2069 -0.7602 6 6 1.6227 -3.2735 -1.4988 7 8 1.5902 -4.3767 -0.9960 8 6 1.2553 -3.0954 -2.9494 9 16 0.8129 -4.7035 -3.6629 10 6 0.4079 -4.2895 -5.3820 11 6 0.0220 -5.5132 -6.1034 12 7 -0.2723 -6.4581 -6.6612 13 6 2.3758 -2.2024 0.6627 14 6 2.0775 -0.7937 1.2086 15 1 2.9910 -0.3313 1.5828 16 7 1.0682 -0.8624 2.2737 17 6 1.6973 -1.0891 3.5816 18 6 0.6332 -1.1530 4.6467 19 8 -0.5345 -1.0220 4.3459 20 7 0.9791 -1.3547 5.9336 21 6 0.0109 -1.4133 6.9026 22 1 -1.0289 -1.2975 6.6347 23 6 0.3675 -1.6218 8.2292 24 7 -0.5605 -1.6775 9.1580 25 14 2.1660 -1.8229 8.6925 26 1 2.7485 -0.4930 9.0041 27 1 2.2748 -2.7024 9.8840 28 1 2.9042 -2.4330 7.5577 29 1 -0.3634 0.4619 0.9180 30 1 -0.3634 0.5641 -0.8589 31 1 -0.3634 -1.0260 -0.0590 32 1 3.1168 -0.5273 -1.4127 33 1 1.4630 -0.6368 -2.0946 34 1 0.4056 -2.4172 -3.0283 35 1 2.1044 -2.6785 -3.4907 36 1 -0.4204 -3.5813 -5.3997 37 1 1.2781 -3.8430 -5.8629 38 1 3.4397 -2.4201 0.7581 39 1 1.7923 -2.9436 1.2089 40 1 0.4983 -0.0297 2.2861 41 1 2.2487 -2.0292 3.5614 42 1 2.3828 -0.2707 3.8018 43 1 1.9130 -1.4591 6.1742 44 1 -0.3116 -1.8234 10.0841 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733838709.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:28 Heat of formation + Delta-G solvation = -46.179479 kcal Electronic energy + Delta-G solvation = -26266.850443 eV Core-core repulsion = 22345.265125 eV Total energy + Delta-G solvation = -3921.585318 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.22368 -40.25956 -39.04549 -37.75448 -36.21595 -35.56896 -33.76249 -33.05766 -31.75889 -31.05556 -29.53005 -27.90846 -27.32551 -25.59570 -23.56119 -21.34141 -20.82822 -20.48127 -20.22162 -19.17792 -18.20626 -17.75829 -17.54124 -17.17067 -16.92177 -16.52084 -16.18934 -16.12244 -15.90378 -15.60604 -15.35325 -15.06164 -14.90570 -14.42921 -14.36000 -14.17605 -14.01591 -13.89295 -13.77427 -13.34391 -13.16279 -13.11103 -13.02313 -12.93956 -12.86058 -12.75999 -12.42282 -12.01568 -11.91306 -11.76605 -11.58521 -11.51171 -11.04385 -10.92000 -10.42535 -10.25137 -9.72239 -9.27696 -8.74997 -8.41688 -6.02702 0.03111 1.30114 1.32808 1.35048 1.44392 1.59100 1.69280 1.95809 1.97879 2.15300 2.22752 2.74348 2.84508 3.15076 3.35209 3.45640 3.58594 3.84205 4.12806 4.16407 4.21337 4.26603 4.31890 4.35668 4.39251 4.44784 4.47611 4.58781 4.68978 4.73185 4.80113 4.91963 4.99974 5.12812 5.20471 5.34971 5.52274 5.59170 5.91581 6.09599 6.43809 6.44955 6.54786 6.59722 6.87925 7.11962 7.39697 7.96551 8.76001 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.018909 B = 0.001941 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.393834 B =14424.093440 C =14958.839895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.101 4.101 3 H 0.122 0.878 4 C 0.104 3.896 5 N -0.611 5.611 6 C 0.535 3.465 7 O -0.582 6.582 8 C -0.100 4.100 9 S -0.232 6.232 10 C 0.000 4.000 11 C 0.245 3.755 12 N -0.477 5.477 13 C 0.112 3.888 14 C 0.076 3.924 15 H 0.090 0.910 16 N -0.682 5.682 17 C 0.061 3.939 18 C 0.447 3.553 19 O -0.615 6.615 20 N -0.591 5.591 21 C -0.329 4.329 22 H 0.054 0.946 23 C -0.016 4.016 24 N -0.935 5.935 25 Si 0.966 3.034 26 H -0.253 1.253 27 H -0.277 1.277 28 H -0.233 1.233 29 H 0.043 0.957 30 H 0.080 0.920 31 H 0.033 0.967 32 H 0.109 0.891 33 H 0.115 0.885 34 H 0.149 0.851 35 H 0.160 0.840 36 H 0.166 0.834 37 H 0.171 0.829 38 H 0.079 0.921 39 H 0.045 0.955 40 H 0.352 0.648 41 H 0.104 0.896 42 H 0.086 0.914 43 H 0.390 0.610 44 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.068 9.420 -30.397 35.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.121 4.121 3 H 0.140 0.860 4 C -0.017 4.017 5 N -0.344 5.344 6 C 0.323 3.677 7 O -0.462 6.462 8 C -0.250 4.250 9 S -0.008 6.008 10 C -0.150 4.150 11 C -0.073 4.073 12 N -0.156 5.156 13 C -0.013 4.013 14 C -0.034 4.034 15 H 0.108 0.892 16 N -0.318 5.318 17 C -0.072 4.072 18 C 0.235 3.765 19 O -0.499 6.499 20 N -0.233 5.233 21 C -0.459 4.459 22 H 0.072 0.928 23 C -0.215 4.215 24 N -0.575 5.575 25 Si 0.786 3.214 26 H -0.177 1.177 27 H -0.202 1.202 28 H -0.156 1.156 29 H 0.062 0.938 30 H 0.099 0.901 31 H 0.052 0.948 32 H 0.127 0.873 33 H 0.134 0.866 34 H 0.166 0.834 35 H 0.177 0.823 36 H 0.184 0.816 37 H 0.189 0.811 38 H 0.097 0.903 39 H 0.064 0.936 40 H 0.175 0.825 41 H 0.122 0.878 42 H 0.104 0.896 43 H 0.225 0.775 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 13.574 5.791 -30.635 34.004 hybrid contribution 0.571 1.527 1.299 2.085 sum 14.145 7.318 -29.336 33.381 Atomic orbital electron populations 1.21602 0.94784 1.01147 1.01838 1.22571 0.96182 1.00263 0.93044 0.86011 1.23053 1.03682 0.77204 0.97780 1.48661 1.65978 1.08707 1.11093 1.19999 0.76446 0.82933 0.88300 1.90788 1.54850 1.26623 1.73979 1.23475 1.09322 0.98394 0.93802 1.88669 1.89780 1.14485 1.07883 1.21073 1.10012 0.91024 0.92886 1.28531 0.91994 0.94010 0.92768 1.81310 1.10910 1.11808 1.11590 1.22117 0.99536 0.98088 0.81521 1.22592 0.94639 0.94345 0.91839 0.89223 1.60227 1.23143 1.46385 1.02062 1.21693 0.93692 1.03913 0.87875 1.21059 0.90703 0.81122 0.83594 1.90544 1.22255 1.55117 1.82025 1.42042 1.08406 1.66366 1.06501 1.19004 0.89997 1.49060 0.87817 0.92797 1.26135 1.04703 0.96124 0.94490 1.69810 1.36060 1.49568 1.02098 0.85352 0.76731 0.79792 0.79558 1.17732 1.20222 1.15621 0.93757 0.90120 0.94789 0.87305 0.86640 0.83350 0.82264 0.81620 0.81117 0.90287 0.93647 0.82463 0.87838 0.89617 0.77478 0.91169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 8.50 71.98 0.61 -1.37 16 2 C -0.10 -0.91 3.58 -9.49 -0.03 -0.94 16 3 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 4 C 0.10 0.45 6.41 86.83 0.56 1.01 16 5 N -0.61 -9.12 3.19 -808.85 -2.58 -11.70 16 6 C 0.53 10.24 7.91 87.66 0.69 10.93 16 7 O -0.58 -18.71 16.20 -3.04 -0.05 -18.76 16 8 C -0.10 -0.69 5.35 71.23 0.38 -0.31 16 9 S -0.23 -3.27 20.83 -56.49 -1.18 -4.45 16 10 C 0.00 0.00 6.42 70.18 0.45 0.45 16 11 C 0.24 3.29 15.44 89.44 1.38 4.68 16 12 N -0.48 -10.44 18.54 20.01 0.37 -10.07 16 13 C 0.11 2.17 6.71 86.53 0.58 2.75 16 14 C 0.08 1.19 3.19 45.80 0.15 1.34 16 15 H 0.09 0.98 7.84 -2.39 -0.02 0.96 16 16 N -0.68 -17.90 5.16 -491.01 -2.53 -20.43 16 17 C 0.06 1.74 6.01 85.56 0.51 2.25 16 18 C 0.45 19.96 7.82 87.65 0.69 20.64 16 19 O -0.61 -33.99 15.78 -3.06 -0.05 -34.04 16 20 N -0.59 -27.82 5.09 -306.99 -1.56 -29.39 16 21 C -0.33 -19.44 10.16 84.04 0.85 -18.59 16 22 H 0.05 3.80 7.39 -2.91 -0.02 3.78 16 23 C -0.02 -0.89 5.50 84.92 0.47 -0.43 16 24 N -0.93 -56.76 13.96 21.66 0.30 -56.46 16 25 Si 0.97 38.83 27.74 68.60 1.90 40.73 16 26 H -0.25 -9.46 7.11 99.48 0.71 -8.76 16 27 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 28 H -0.23 -7.93 6.52 99.48 0.65 -7.28 16 29 H 0.04 0.87 6.22 -2.39 -0.01 0.85 16 30 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.03 0.71 8.07 -2.39 -0.02 0.69 16 32 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 33 H 0.12 -0.20 7.15 -2.39 -0.02 -0.21 16 34 H 0.15 0.11 7.91 -2.39 -0.02 0.09 16 35 H 0.16 -0.28 8.14 -2.39 -0.02 -0.30 16 36 H 0.17 -0.70 8.14 -2.39 -0.02 -0.72 16 37 H 0.17 -0.93 8.14 -2.40 -0.02 -0.94 16 38 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 39 H 0.04 1.34 7.84 -2.39 -0.02 1.32 16 40 H 0.35 9.70 6.01 -89.69 -0.54 9.16 16 41 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 42 H 0.09 1.83 8.07 -2.39 -0.02 1.81 16 43 H 0.39 15.09 5.76 -92.71 -0.53 14.55 16 44 H 0.28 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -99.75 385.92 1.83 -97.92 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: -0.09 Total: 24.21 kcal Atomic # 6 Polarization: 15.14 SS G_CDS: 7.29 Total: 22.42 kcal Atomic # 7 Polarization: -122.04 SS G_CDS: -6.01 Total: -128.05 kcal Atomic # 8 Polarization: -52.70 SS G_CDS: -0.10 Total: -52.79 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 1.90 Total: 40.73 kcal Atomic # 16 Polarization: -3.27 SS G_CDS: -1.18 Total: -4.45 kcal Total: -99.75 1.83 -97.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733838709.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.743 kcal (2) G-P(sol) polarization free energy of solvation -99.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds