Wall clock time and date at job start Sat Apr 11 2020 06:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47114 * 2 1 4 4 N 1.46893 * 109.47338 * 179.97438 * 3 2 1 5 5 C 1.46897 * 111.00145 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47305 * 179.97438 * 5 4 3 7 7 C 1.38271 * 119.99018 * 270.27762 * 6 5 4 8 8 C 1.38219 * 120.05287 * 180.27975 * 7 6 5 9 9 C 1.38227 * 120.02402 * 359.44048 * 8 7 6 10 10 C 1.50699 * 120.01020 * 180.30126 * 9 8 7 11 11 N 1.46501 * 109.47117 * 105.00362 * 10 9 8 12 12 C 1.34768 * 120.00130 * 179.97438 * 11 10 9 13 13 O 1.21279 * 120.00052 * 359.97438 * 12 11 10 14 14 C 1.50702 * 120.00343 * 180.02562 * 12 11 10 15 15 S 1.80992 * 109.47356 * 179.97438 * 14 12 11 16 16 C 1.76205 * 100.00181 * 179.97438 * 15 14 12 17 17 H 1.07997 * 119.99656 * 0.02562 * 16 15 14 18 18 C 1.38793 * 120.00319 * 179.97438 * 16 15 14 19 19 N 1.31629 * 119.99830 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00088 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46914 * 90.00389 * 20 18 16 22 22 H 1.48502 * 109.47034 * 210.00077 * 20 18 16 23 23 H 1.48503 * 109.47165 * 329.99950 * 20 18 16 24 24 C 1.38435 * 119.97401 * 0.28161 * 9 8 7 25 25 F 1.35097 * 120.02386 * 180.02562 * 24 9 8 26 26 C 1.38173 * 119.98826 * 90.00151 * 6 5 4 27 27 H 1.09006 * 109.47009 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47193 * 299.99832 * 1 2 3 29 29 H 1.08997 * 109.46960 * 60.00033 * 1 2 3 30 30 H 1.08996 * 109.47566 * 239.99920 * 2 1 3 31 31 H 1.09000 * 109.47669 * 119.99386 * 2 1 3 32 32 H 1.09002 * 109.46953 * 60.00021 * 3 2 1 33 33 H 1.09004 * 109.46793 * 300.00347 * 3 2 1 34 34 H 1.00906 * 111.00199 * 303.95155 * 4 3 2 35 35 H 1.09004 * 109.47361 * 60.00324 * 5 4 3 36 36 H 1.09000 * 109.46937 * 300.00161 * 5 4 3 37 37 H 1.08000 * 119.97453 * 359.97438 * 7 6 5 38 38 H 1.08002 * 119.99072 * 179.72656 * 8 7 6 39 39 H 1.09002 * 109.46878 * 225.00273 * 10 9 8 40 40 H 1.09001 * 109.47486 * 344.99963 * 10 9 8 41 41 H 0.96998 * 119.99558 * 359.97438 * 11 10 9 42 42 H 1.09002 * 109.47063 * 300.00104 * 14 12 11 43 43 H 1.09001 * 109.47166 * 59.99711 * 14 12 11 44 44 H 0.97005 * 120.00004 * 179.97438 * 19 18 16 45 45 H 1.08004 * 120.01046 * 0.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5089 1.4426 0.0006 5 6 4.0353 2.8140 0.0000 6 6 5.5418 2.7739 0.0013 7 6 6.2315 2.7506 1.1995 8 6 7.6134 2.7196 1.2022 9 6 8.3071 2.7002 0.0068 10 6 9.8135 2.6596 0.0102 11 7 10.2665 1.3125 -0.3456 12 6 11.5847 1.0391 -0.4067 13 8 12.3961 1.9083 -0.1678 14 6 12.0508 -0.3464 -0.7732 15 16 13.8600 -0.3949 -0.7705 16 6 14.1217 -2.0790 -1.2178 17 1 13.2770 -2.7272 -1.3986 18 6 15.4134 -2.5723 -1.3389 19 7 16.4429 -1.7821 -1.1191 20 14 15.6908 -4.3575 -1.8138 21 1 15.7756 -4.4689 -3.2921 22 1 16.9577 -4.8399 -1.2075 23 1 14.5596 -5.1828 -1.3192 24 6 7.6175 2.7177 -1.1934 25 9 8.2945 2.6983 -2.3624 26 6 6.2332 2.7546 -1.1948 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.8703 0.9167 0.7823 35 1 3.6855 3.3379 0.8896 36 1 3.6862 3.3368 -0.8904 37 1 5.6902 2.7616 2.1340 38 1 8.1512 2.7059 2.1387 39 1 10.1979 3.3758 -0.7161 40 1 10.1818 2.9163 1.0034 41 1 9.6176 0.6175 -0.5370 42 1 11.6666 -1.0629 -0.0471 43 1 11.6823 -0.6028 -1.7665 44 1 17.3457 -2.1269 -1.2033 45 1 5.6941 2.7688 -2.1306 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734637952.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:38 Heat of formation + Delta-G solvation = -73.390405 kcal Electronic energy + Delta-G solvation = -25335.953524 eV Core-core repulsion = 21393.268290 eV Total energy + Delta-G solvation = -3942.685234 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.09049 -39.95747 -38.96608 -37.26921 -35.06292 -33.58200 -32.40314 -31.65374 -30.88694 -29.45694 -27.51282 -25.56222 -25.22205 -23.60036 -23.25521 -21.91942 -21.23228 -20.37573 -17.96311 -17.43915 -17.14190 -16.54984 -16.35540 -16.26077 -15.75637 -15.46316 -15.35570 -15.05985 -14.85904 -14.77768 -14.30033 -14.23068 -13.90279 -13.55972 -13.33555 -13.19067 -13.01781 -12.75670 -12.63344 -12.46944 -12.37183 -12.05969 -12.02547 -11.67268 -11.54381 -11.24020 -11.20694 -11.04025 -10.99838 -10.74175 -9.79750 -9.60243 -9.23334 -9.08331 -9.04570 -8.92292 -8.82229 -8.20703 -6.46992 -6.19094 -3.89397 0.65051 0.85161 2.93309 3.12228 3.18725 3.24520 3.30876 3.38492 3.71914 3.83816 3.91730 4.21040 4.23067 4.31096 4.40263 4.46742 4.54180 4.70113 4.79500 4.83956 4.99058 5.02524 5.08500 5.16034 5.17111 5.17230 5.25058 5.34370 5.42345 5.54387 5.58903 5.66455 5.69213 5.74009 5.76502 5.80447 5.92346 6.01471 6.04042 6.18076 6.40358 6.51020 6.58773 6.80262 7.62320 7.71444 8.37998 8.62426 9.26248 10.88349 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014042 B = 0.001841 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.542506 B =15208.893293 C =16567.330690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C 0.058 3.942 4 N -0.687 5.687 5 C 0.098 3.902 6 C -0.054 4.054 7 C -0.127 4.127 8 C -0.071 4.071 9 C -0.135 4.135 10 C 0.164 3.836 11 N -0.734 5.734 12 C 0.534 3.466 13 O -0.517 6.517 14 C -0.153 4.153 15 S -0.060 6.060 16 C -0.535 4.535 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C 0.116 3.884 25 F -0.130 7.130 26 C -0.134 4.134 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.030 0.970 33 H 0.073 0.927 34 H 0.344 0.656 35 H 0.044 0.956 36 H 0.084 0.916 37 H 0.127 0.873 38 H 0.137 0.863 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.399 0.601 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.268 0.732 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.696 9.031 4.566 34.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.071 4.071 4 N -0.318 5.318 5 C -0.030 4.030 6 C -0.055 4.055 7 C -0.145 4.145 8 C -0.090 4.090 9 C -0.137 4.137 10 C 0.040 3.960 11 N -0.389 5.389 12 C 0.320 3.680 13 O -0.391 6.391 14 C -0.303 4.303 15 S 0.167 5.833 16 C -0.684 4.684 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.197 1.197 24 C 0.096 3.904 25 F -0.109 7.109 26 C -0.153 4.153 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.048 0.952 33 H 0.091 0.909 34 H 0.162 0.838 35 H 0.062 0.938 36 H 0.102 0.898 37 H 0.145 0.855 38 H 0.154 0.846 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.232 0.768 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.078 0.922 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -31.060 10.452 4.245 33.045 hybrid contribution -1.165 -2.182 -0.008 2.474 sum -32.224 8.269 4.238 33.537 Atomic orbital electron populations 1.21730 0.95424 1.01985 1.01798 1.21512 0.95693 0.96148 1.02862 1.22039 0.87053 0.97382 1.00653 1.60483 1.07551 1.13179 1.50567 1.20881 0.89925 0.90416 1.01796 1.19575 0.95188 0.98331 0.92367 1.21073 0.94113 1.01677 0.97673 1.20988 0.93892 0.96894 0.97204 1.20057 0.96254 1.05013 0.92382 1.20029 0.87754 0.85868 1.02341 1.46021 1.07522 1.11982 1.73347 1.20318 0.81330 0.90251 0.76117 1.90702 1.52953 1.48030 1.47457 1.23529 1.07068 0.95376 1.04354 1.85381 0.91747 1.15270 1.90909 1.22876 0.95127 0.95947 1.54407 0.90913 1.24987 0.94956 0.98787 0.94842 1.70021 0.98644 1.35591 1.46050 0.86169 0.77835 0.82787 0.78714 1.20275 1.20760 1.19699 1.17594 0.89932 1.01655 0.81183 1.91556 1.80136 1.93492 1.45668 1.20990 0.91811 1.02986 0.99537 0.92384 0.92857 0.92582 0.90919 0.92053 0.95211 0.90869 0.83765 0.93834 0.89797 0.85457 0.84558 0.90402 0.90175 0.76757 0.89181 0.89154 0.92207 0.84495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.91 37.16 0.37 -0.24 16 2 C -0.12 -0.59 6.19 -26.73 -0.17 -0.76 16 3 C 0.06 0.28 5.69 -3.82 -0.02 0.26 16 4 N -0.69 -4.02 6.49 -115.06 -0.75 -4.77 16 5 C 0.10 0.54 5.81 -4.98 -0.03 0.51 16 6 C -0.05 -0.38 5.39 -104.63 -0.56 -0.94 16 7 C -0.13 -0.84 9.70 -39.58 -0.38 -1.22 16 8 C -0.07 -0.56 9.67 -39.59 -0.38 -0.95 16 9 C -0.14 -1.36 5.25 -104.55 -0.55 -1.91 16 10 C 0.16 2.05 5.49 -5.19 -0.03 2.03 16 11 N -0.73 -10.55 5.55 -61.47 -0.34 -10.89 16 12 C 0.53 10.31 7.85 -10.99 -0.09 10.22 16 13 O -0.52 -12.00 15.86 5.56 0.09 -11.91 16 14 C -0.15 -3.17 6.16 36.01 0.22 -2.95 16 15 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 16 C -0.54 -15.47 9.50 30.94 0.29 -15.18 16 17 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 18 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 19 N -0.87 -26.42 13.22 55.49 0.73 -25.68 16 20 Si 0.92 21.65 29.55 -169.99 -5.02 16.62 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 C 0.12 1.22 7.25 -39.42 -0.29 0.93 16 25 F -0.13 -1.64 16.76 2.25 0.04 -1.61 16 26 C -0.13 -1.15 9.68 -39.52 -0.38 -1.53 16 27 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 28 H 0.05 0.20 8.14 -51.93 -0.42 -0.23 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.03 0.13 8.14 -51.93 -0.42 -0.29 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.34 1.87 8.72 -39.29 -0.34 1.53 16 35 H 0.04 0.20 8.09 -51.93 -0.42 -0.22 16 36 H 0.08 0.44 8.09 -51.93 -0.42 0.02 16 37 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 38 H 0.14 0.89 8.00 -52.49 -0.42 0.47 16 39 H 0.08 1.08 8.08 -51.93 -0.42 0.66 16 40 H 0.08 0.98 7.95 -51.93 -0.41 0.56 16 41 H 0.40 4.84 8.46 -40.82 -0.35 4.50 16 42 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 43 H 0.09 1.76 8.14 -51.91 -0.42 1.33 16 44 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 45 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 LS Contribution 401.25 15.07 6.05 6.05 Total: -1.00 -34.60 401.25 -10.48 -45.08 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -6.98 Total: 0.68 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -2.09 Total: -9.71 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: -0.35 Total: -41.34 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.09 Total: -11.91 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.60 -10.48 -45.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734637952.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.309 kcal (2) G-P(sol) polarization free energy of solvation -34.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds