Wall clock time and date at job start Sat Apr 11 2020 06:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47114 * 2 1 4 4 N 1.46893 * 109.47338 * 179.97438 * 3 2 1 5 5 C 1.46897 * 111.00145 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47305 * 179.97438 * 5 4 3 7 7 C 1.38271 * 119.99018 * 270.27762 * 6 5 4 8 8 C 1.38219 * 120.05287 * 180.27975 * 7 6 5 9 9 C 1.38227 * 120.02402 * 359.44048 * 8 7 6 10 10 C 1.50699 * 120.01020 * 180.30126 * 9 8 7 11 11 N 1.46501 * 109.47117 * 105.00362 * 10 9 8 12 12 C 1.34768 * 120.00130 * 179.97438 * 11 10 9 13 13 O 1.21279 * 120.00052 * 359.97438 * 12 11 10 14 14 C 1.50702 * 120.00343 * 180.02562 * 12 11 10 15 15 S 1.80992 * 109.47356 * 179.97438 * 14 12 11 16 16 C 1.76205 * 100.00181 * 179.97438 * 15 14 12 17 17 H 1.07997 * 119.99656 * 0.02562 * 16 15 14 18 18 C 1.38793 * 120.00319 * 179.97438 * 16 15 14 19 19 N 1.31629 * 119.99830 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00088 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46914 * 90.00389 * 20 18 16 22 22 H 1.48502 * 109.47034 * 210.00077 * 20 18 16 23 23 H 1.48503 * 109.47165 * 329.99950 * 20 18 16 24 24 C 1.38435 * 119.97401 * 0.28161 * 9 8 7 25 25 F 1.35097 * 120.02386 * 180.02562 * 24 9 8 26 26 C 1.38173 * 119.98826 * 90.00151 * 6 5 4 27 27 H 1.09006 * 109.47009 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47193 * 299.99832 * 1 2 3 29 29 H 1.08997 * 109.46960 * 60.00033 * 1 2 3 30 30 H 1.08996 * 109.47566 * 239.99920 * 2 1 3 31 31 H 1.09000 * 109.47669 * 119.99386 * 2 1 3 32 32 H 1.09002 * 109.46953 * 60.00021 * 3 2 1 33 33 H 1.09004 * 109.46793 * 300.00347 * 3 2 1 34 34 H 1.00906 * 111.00199 * 303.95155 * 4 3 2 35 35 H 1.09004 * 109.47361 * 60.00324 * 5 4 3 36 36 H 1.09000 * 109.46937 * 300.00161 * 5 4 3 37 37 H 1.08000 * 119.97453 * 359.97438 * 7 6 5 38 38 H 1.08002 * 119.99072 * 179.72656 * 8 7 6 39 39 H 1.09002 * 109.46878 * 225.00273 * 10 9 8 40 40 H 1.09001 * 109.47486 * 344.99963 * 10 9 8 41 41 H 0.96998 * 119.99558 * 359.97438 * 11 10 9 42 42 H 1.09002 * 109.47063 * 300.00104 * 14 12 11 43 43 H 1.09001 * 109.47166 * 59.99711 * 14 12 11 44 44 H 0.97005 * 120.00004 * 179.97438 * 19 18 16 45 45 H 1.08004 * 120.01046 * 0.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5089 1.4426 0.0006 5 6 4.0353 2.8140 0.0000 6 6 5.5418 2.7739 0.0013 7 6 6.2315 2.7506 1.1995 8 6 7.6134 2.7196 1.2022 9 6 8.3071 2.7002 0.0068 10 6 9.8135 2.6596 0.0102 11 7 10.2665 1.3125 -0.3456 12 6 11.5847 1.0391 -0.4067 13 8 12.3961 1.9083 -0.1678 14 6 12.0508 -0.3464 -0.7732 15 16 13.8600 -0.3949 -0.7705 16 6 14.1217 -2.0790 -1.2178 17 1 13.2770 -2.7272 -1.3986 18 6 15.4134 -2.5723 -1.3389 19 7 16.4429 -1.7821 -1.1191 20 14 15.6908 -4.3575 -1.8138 21 1 15.7756 -4.4689 -3.2921 22 1 16.9577 -4.8399 -1.2075 23 1 14.5596 -5.1828 -1.3192 24 6 7.6175 2.7177 -1.1934 25 9 8.2945 2.6983 -2.3624 26 6 6.2332 2.7546 -1.1948 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.8703 0.9167 0.7823 35 1 3.6855 3.3379 0.8896 36 1 3.6862 3.3368 -0.8904 37 1 5.6902 2.7616 2.1340 38 1 8.1512 2.7059 2.1387 39 1 10.1979 3.3758 -0.7161 40 1 10.1818 2.9163 1.0034 41 1 9.6176 0.6175 -0.5370 42 1 11.6666 -1.0629 -0.0471 43 1 11.6823 -0.6028 -1.7665 44 1 17.3457 -2.1269 -1.2033 45 1 5.6941 2.7688 -2.1306 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734637952.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:37 Heat of formation + Delta-G solvation = -96.442991 kcal Electronic energy + Delta-G solvation = -25336.953159 eV Core-core repulsion = 21393.268290 eV Total energy + Delta-G solvation = -3943.684869 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.95568 -40.88766 -40.17922 -37.76393 -36.12353 -34.58876 -34.24944 -32.49511 -31.58134 -30.77725 -28.33477 -27.63519 -25.98912 -24.20878 -23.90085 -22.33461 -21.86559 -21.85154 -19.90132 -18.30836 -17.89788 -17.82931 -17.47230 -16.90465 -16.88041 -16.63567 -16.49051 -16.21617 -15.89788 -15.75393 -15.49311 -14.88512 -14.74876 -14.72906 -14.49192 -14.42232 -14.03326 -13.81491 -13.39792 -13.29070 -13.17017 -13.03797 -12.89752 -12.84150 -12.63158 -12.57065 -12.48880 -12.01050 -11.76891 -11.71406 -11.59187 -11.14544 -11.09773 -10.29430 -10.23305 -9.95496 -9.71413 -9.34891 -8.67300 -8.34804 -6.13174 -0.03891 0.20848 1.26572 1.42542 1.46604 1.56560 1.57602 2.19173 2.27243 2.60968 2.99276 3.16494 3.31180 3.35166 3.45174 3.66050 3.85127 3.95019 4.07269 4.08544 4.19039 4.25274 4.27808 4.43423 4.48790 4.50434 4.53402 4.58719 4.64326 4.71881 4.83555 4.88076 4.90788 5.04847 5.11467 5.22678 5.26992 5.32268 5.34575 5.41278 5.41746 5.45921 5.84928 6.03756 6.19731 6.40924 6.42692 7.06347 7.16365 8.74486 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014042 B = 0.001841 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.542506 B =15208.893293 C =16567.330690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C 0.061 3.939 4 N -0.698 5.698 5 C 0.101 3.899 6 C -0.046 4.046 7 C -0.116 4.116 8 C -0.069 4.069 9 C -0.145 4.145 10 C 0.165 3.835 11 N -0.710 5.710 12 C 0.536 3.464 13 O -0.563 6.563 14 C -0.130 4.130 15 S -0.148 6.148 16 C -0.548 4.548 17 H 0.082 0.918 18 C 0.014 3.986 19 N -0.911 5.911 20 Si 0.999 3.001 21 H -0.269 1.269 22 H -0.276 1.276 23 H -0.258 1.258 24 C 0.094 3.906 25 F -0.150 7.150 26 C -0.138 4.138 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.039 0.961 33 H 0.071 0.929 34 H 0.347 0.653 35 H 0.061 0.939 36 H 0.085 0.915 37 H 0.157 0.843 38 H 0.153 0.847 39 H 0.060 0.940 40 H 0.086 0.914 41 H 0.412 0.588 42 H 0.112 0.888 43 H 0.106 0.894 44 H 0.271 0.729 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.661 7.939 5.448 36.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.068 4.068 4 N -0.330 5.330 5 C -0.027 4.027 6 C -0.047 4.047 7 C -0.134 4.134 8 C -0.087 4.087 9 C -0.146 4.146 10 C 0.042 3.958 11 N -0.364 5.364 12 C 0.322 3.678 13 O -0.441 6.441 14 C -0.281 4.281 15 S 0.080 5.920 16 C -0.696 4.696 17 H 0.101 0.899 18 C -0.191 4.191 19 N -0.547 5.547 20 Si 0.821 3.179 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.182 1.182 24 C 0.074 3.926 25 F -0.129 7.129 26 C -0.157 4.157 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.089 0.911 34 H 0.165 0.835 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.175 0.825 38 H 0.171 0.829 39 H 0.078 0.922 40 H 0.104 0.896 41 H 0.249 0.751 42 H 0.130 0.870 43 H 0.125 0.875 44 H 0.080 0.920 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -34.093 9.359 5.126 35.724 hybrid contribution -0.436 -1.757 -0.244 1.827 sum -34.528 7.602 4.882 35.691 Atomic orbital electron populations 1.21718 0.94882 1.02109 1.02095 1.21483 0.96154 0.96113 1.02268 1.22016 0.86512 0.97330 1.00945 1.60467 1.08149 1.13410 1.50956 1.20889 0.88599 0.90504 1.02747 1.19814 0.96153 0.96828 0.91925 1.21391 0.93577 0.99735 0.98704 1.21206 0.94625 0.95988 0.96873 1.19851 0.94448 1.07063 0.93249 1.20068 0.89787 0.84026 1.01940 1.45805 1.05930 1.13343 1.71284 1.20062 0.82562 0.89154 0.76003 1.90689 1.54508 1.48972 1.49925 1.23369 1.01488 0.97179 1.06041 1.85544 0.98906 1.16311 1.91286 1.23213 0.95903 0.95960 1.54528 0.89950 1.26128 0.94482 1.04075 0.94397 1.70183 0.99252 1.38100 1.47170 0.84948 0.78176 0.76227 0.78585 1.19378 1.20150 1.18181 1.17853 0.90731 1.03350 0.80659 1.91502 1.80664 1.93897 1.46809 1.21121 0.91040 1.02927 1.00615 0.92384 0.92313 0.92521 0.92192 0.91942 0.94322 0.91087 0.83460 0.92113 0.89659 0.82491 0.82930 0.92169 0.89617 0.75141 0.87007 0.87541 0.91957 0.84039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 71.98 0.71 -0.27 16 2 C -0.12 -0.98 6.19 30.60 0.19 -0.79 16 3 C 0.06 0.46 5.69 86.31 0.49 0.95 16 4 N -0.70 -6.45 6.49 -517.93 -3.36 -9.82 16 5 C 0.10 0.81 5.81 85.56 0.50 1.31 16 6 C -0.05 -0.53 5.39 -19.87 -0.11 -0.64 16 7 C -0.12 -1.14 9.70 22.27 0.22 -0.92 16 8 C -0.07 -0.91 9.67 22.26 0.22 -0.69 16 9 C -0.14 -2.74 5.25 -19.82 -0.10 -2.85 16 10 C 0.16 4.09 5.49 85.63 0.47 4.56 16 11 N -0.71 -19.93 5.55 -466.79 -2.59 -22.52 16 12 C 0.54 20.78 7.85 87.66 0.69 21.47 16 13 O -0.56 -26.87 15.86 -3.03 -0.05 -26.92 16 14 C -0.13 -5.35 6.16 71.24 0.44 -4.91 16 15 S -0.15 -8.37 20.57 -56.49 -1.16 -9.53 16 16 C -0.55 -31.85 9.50 67.95 0.65 -31.21 16 17 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 18 C 0.01 0.81 5.49 84.86 0.47 1.27 16 19 N -0.91 -56.52 13.22 21.65 0.29 -56.24 16 20 Si 1.00 44.13 29.55 68.60 2.03 46.15 16 21 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 22 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 24 C 0.09 1.91 7.25 22.37 0.16 2.07 16 25 F -0.15 -3.85 16.76 44.97 0.75 -3.10 16 26 C -0.14 -2.18 9.68 22.31 0.22 -1.96 16 27 H 0.06 0.38 8.14 -2.38 -0.02 0.36 16 28 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.04 0.23 8.14 -2.39 -0.02 0.22 16 33 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 34 H 0.35 2.82 8.72 -89.69 -0.78 2.04 16 35 H 0.06 0.31 8.09 -2.38 -0.02 0.29 16 36 H 0.09 0.69 8.09 -2.39 -0.02 0.67 16 37 H 0.16 0.66 8.06 -2.91 -0.02 0.64 16 38 H 0.15 1.52 8.00 -2.91 -0.02 1.50 16 39 H 0.06 1.72 8.08 -2.39 -0.02 1.70 16 40 H 0.09 2.05 7.95 -2.39 -0.02 2.03 16 41 H 0.41 9.41 8.46 -92.71 -0.78 8.63 16 42 H 0.11 4.12 8.14 -2.39 -0.02 4.10 16 43 H 0.11 4.04 8.14 -2.40 -0.02 4.02 16 44 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16 45 H 0.14 2.04 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -77.20 401.25 0.54 -76.66 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -0.56 Total: 17.91 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: 5.20 Total: -12.60 kcal Atomic # 7 Polarization: -82.90 SS G_CDS: -5.66 Total: -88.57 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.05 Total: -26.92 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.75 Total: -3.10 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.53 kcal Total: -77.20 0.54 -76.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734637952.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.782 kcal (2) G-P(sol) polarization free energy of solvation -77.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds