Wall clock time and date at job start Sat Apr 11 2020 05:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35706 * 116.99788 * 2 1 4 4 C 1.38825 * 120.14852 * 270.25537 * 3 2 1 5 5 F 1.35101 * 119.94148 * 359.97438 * 4 3 2 6 6 C 1.38270 * 120.11631 * 180.26268 * 4 3 2 7 7 C 1.38453 * 120.40863 * 359.76014 * 6 4 3 8 8 C 1.38088 * 120.29004 * 359.97438 * 7 6 4 9 9 F 1.35100 * 120.06277 * 179.97438 * 8 7 6 10 10 C 1.39998 * 119.87474 * 359.97438 * 8 7 6 11 11 C 1.47392 * 120.19822 * 180.02562 * 10 8 7 12 12 O 1.21601 * 120.00087 * 89.99946 * 11 10 8 13 13 N 1.34780 * 119.99979 * 270.00459 * 11 10 8 14 14 C 1.46496 * 119.99734 * 180.02562 * 13 11 10 15 15 H 1.08995 * 109.47552 * 324.99740 * 14 13 11 16 16 C 1.53008 * 109.47421 * 84.99427 * 14 13 11 17 17 C 1.52998 * 109.46930 * 204.99506 * 14 13 11 18 18 C 1.53504 * 114.20785 * 179.97438 * 17 14 13 19 19 N 1.47069 * 87.98363 * 220.34571 * 18 17 14 20 20 C 1.36941 * 136.05552 * 207.07801 * 19 18 17 21 21 H 1.08000 * 119.99396 * 7.56018 * 20 19 18 22 22 C 1.38806 * 119.99993 * 187.55101 * 20 19 18 23 23 N 1.31621 * 119.99759 * 174.37714 * 22 20 19 24 24 Si 1.86799 * 119.99972 * 354.38427 * 22 20 19 25 25 H 1.48501 * 109.46963 * 174.94900 * 24 22 20 26 26 H 1.48498 * 109.47184 * 294.94894 * 24 22 20 27 27 H 1.48507 * 109.47082 * 54.95224 * 24 22 20 28 28 C 1.47064 * 87.88742 * 27.34488 * 19 18 17 29 29 H 1.08998 * 109.47060 * 299.99792 * 1 2 3 30 30 H 1.08992 * 109.47257 * 60.00055 * 1 2 3 31 31 H 1.09004 * 109.47034 * 179.97438 * 1 2 3 32 32 H 1.07997 * 119.79756 * 179.74239 * 6 4 3 33 33 H 1.08002 * 119.85538 * 179.97438 * 7 6 4 34 34 H 0.96996 * 120.00127 * 359.97438 * 13 11 10 35 35 H 1.09004 * 109.46240 * 60.00200 * 16 14 13 36 36 H 1.08998 * 109.47419 * 179.97438 * 16 14 13 37 37 H 1.08994 * 109.46942 * 300.00242 * 16 14 13 38 38 H 1.09002 * 113.41395 * 313.19707 * 17 14 13 39 39 H 1.08997 * 113.46758 * 105.56146 * 18 17 14 40 40 H 1.09000 * 113.51898 * 335.13170 * 18 17 14 41 41 H 0.96993 * 120.00423 * 354.88754 * 23 22 20 42 42 H 1.08993 * 113.47012 * 87.43421 * 28 19 18 43 43 H 1.09000 * 113.46758 * 217.87997 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 2.3568 1.8329 -1.2004 5 9 2.0468 1.2347 -2.3715 6 6 2.9894 3.0624 -1.1997 7 6 3.3125 3.6836 -0.0053 8 6 3.0053 3.0809 1.1986 9 9 3.3231 3.6909 2.3614 10 6 2.3639 1.8365 1.2118 11 6 2.0322 1.1870 2.4927 12 8 0.9593 1.4016 3.0233 13 7 2.9180 0.3554 3.0759 14 6 2.5880 -0.2906 4.3487 15 1 1.9929 0.3897 4.9579 16 6 1.7882 -1.5671 4.0806 17 6 3.8785 -0.6436 5.0910 18 6 3.6574 -1.3289 6.4467 19 7 4.7599 -0.5144 6.9796 20 6 5.6812 -0.6390 7.9850 21 1 5.7680 -1.5699 8.5255 22 6 6.5036 0.4312 8.3093 23 7 7.3110 0.3503 9.3457 24 14 6.4643 1.9862 7.2750 25 1 7.3365 3.0155 7.8956 26 1 6.9535 1.6828 5.9062 27 1 5.0717 2.4966 7.2013 28 6 4.4333 0.4957 5.9618 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.2333 3.5410 -2.1366 33 1 3.8069 4.6437 -0.0151 34 1 3.7737 0.1840 2.6525 35 1 2.3835 -2.2474 3.4714 36 1 1.5431 -2.0479 5.0276 37 1 0.8690 -1.3155 3.5517 38 1 4.6219 -1.1305 4.4598 39 1 3.8738 -2.3971 6.4335 40 1 2.6916 -1.1001 6.8973 41 1 7.2787 -0.4261 9.9262 42 1 3.6719 1.2060 6.2839 43 1 5.3108 0.9819 5.5355 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970264197.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:11 Heat of formation + Delta-G solvation = -67.543037 kcal Electronic energy + Delta-G solvation = -30122.065778 eV Core-core repulsion = 25613.420929 eV Total energy + Delta-G solvation = -4508.644849 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.40451 -49.37266 -40.77956 -39.49105 -38.42424 -37.70706 -35.09714 -32.55051 -31.93223 -30.48105 -30.21081 -27.75809 -27.45898 -25.56826 -24.84089 -23.64795 -23.08565 -21.44937 -20.66203 -19.64292 -18.82777 -18.22950 -18.16831 -17.47786 -17.03422 -16.71875 -16.44707 -16.29901 -15.80830 -15.44483 -15.31893 -15.08571 -14.90150 -14.70185 -14.48255 -13.87820 -13.77861 -13.63610 -13.16279 -13.12313 -12.95852 -12.68332 -12.32925 -12.31571 -11.93445 -11.89517 -11.82919 -11.54395 -10.95581 -10.68383 -10.66259 -10.37744 -10.34618 -10.06070 -9.62740 -9.30638 -9.13350 -9.08843 -8.97764 -8.89829 -7.16246 -6.29097 -3.23178 0.14579 0.28012 2.27849 2.46231 2.86556 3.09594 3.41354 3.46544 3.61694 3.65654 3.68458 4.05855 4.30105 4.37014 4.60306 4.64234 4.72142 4.85948 4.88664 4.97245 5.06359 5.18787 5.23176 5.30013 5.31742 5.41508 5.41994 5.47542 5.55069 5.73850 5.84142 5.94346 5.98787 6.11980 6.22966 6.26686 6.28727 6.37726 6.50658 6.77585 6.90206 7.12120 7.34400 7.98851 8.23928 8.97946 9.50319 10.36881 11.20911 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015856 B = 0.003280 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.484975 B = 8535.257420 C = 9721.063978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.322 6.322 3 C 0.127 3.873 4 C 0.070 3.930 5 F -0.124 7.124 6 C -0.097 4.097 7 C -0.130 4.130 8 C 0.141 3.859 9 F -0.116 7.116 10 C -0.156 4.156 11 C 0.572 3.428 12 O -0.525 6.525 13 N -0.702 5.702 14 C 0.151 3.849 15 H 0.092 0.908 16 C -0.157 4.157 17 C -0.140 4.140 18 C 0.135 3.865 19 N -0.629 5.629 20 C -0.304 4.304 21 H 0.083 0.917 22 C -0.025 4.025 23 N -0.934 5.934 24 Si 1.069 2.931 25 H -0.295 1.295 26 H -0.293 1.293 27 H -0.287 1.287 28 C 0.102 3.898 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.102 0.898 32 H 0.156 0.844 33 H 0.158 0.842 34 H 0.403 0.597 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.055 0.945 38 H 0.099 0.901 39 H 0.047 0.953 40 H 0.040 0.960 41 H 0.261 0.739 42 H 0.045 0.955 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.774 3.365 -25.877 29.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.238 6.238 3 C 0.081 3.919 4 C 0.050 3.950 5 F -0.102 7.102 6 C -0.116 4.116 7 C -0.149 4.149 8 C 0.121 3.879 9 F -0.094 7.094 10 C -0.160 4.160 11 C 0.356 3.644 12 O -0.402 6.402 13 N -0.351 5.351 14 C 0.047 3.953 15 H 0.110 0.890 16 C -0.215 4.215 17 C -0.160 4.160 18 C 0.008 3.992 19 N -0.357 5.357 20 C -0.430 4.430 21 H 0.101 0.899 22 C -0.223 4.223 23 N -0.577 5.577 24 Si 0.902 3.098 25 H -0.222 1.222 26 H -0.222 1.222 27 H -0.214 1.214 28 C -0.023 4.023 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.121 0.879 32 H 0.174 0.826 33 H 0.176 0.824 34 H 0.238 0.762 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.117 0.883 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.569 4.760 -25.415 28.750 hybrid contribution -0.464 -1.412 0.005 1.486 sum -13.033 3.349 -25.410 28.753 Atomic orbital electron populations 1.23213 0.76954 1.04324 1.01687 1.86014 1.21215 1.22576 1.93999 1.18267 0.97613 0.86787 0.89271 1.17858 1.03228 0.92981 0.80931 1.91542 1.91012 1.83096 1.44575 1.21054 0.97557 0.93136 0.99843 1.21022 1.02263 1.02066 0.89562 1.17461 0.97433 0.90464 0.82551 1.91630 1.90017 1.81802 1.45949 1.20272 1.05169 0.95642 0.94961 1.17557 0.84685 0.78917 0.83245 1.90828 1.23074 1.62450 1.63841 1.46072 1.19565 1.45572 1.23920 1.21121 0.96580 0.94391 0.83222 0.88992 1.22105 0.99915 0.97051 1.02433 1.23581 0.95688 1.00600 0.96163 1.22248 0.92011 0.95909 0.89005 1.45966 1.33098 1.18649 1.37944 1.20162 1.12367 1.00155 1.10324 0.89911 1.25710 0.96031 1.00999 0.99582 1.70913 1.39913 1.31924 1.14914 0.83729 0.75686 0.76086 0.74320 1.22190 1.22151 1.21359 1.22843 0.97717 0.92918 0.88835 0.91995 0.93054 0.87915 0.82587 0.82449 0.76234 0.92335 0.91102 0.92547 0.88272 0.93441 0.94278 0.92933 0.93698 0.93027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.13 101.05 1.12 1.40 16 2 O -0.32 -3.55 9.73 -18.82 -0.18 -3.73 16 3 C 0.13 1.34 5.74 -38.65 -0.22 1.12 16 4 C 0.07 0.62 7.30 -39.35 -0.29 0.33 16 5 F -0.12 -1.15 17.11 2.25 0.04 -1.11 16 6 C -0.10 -0.61 10.00 -39.49 -0.39 -1.01 16 7 C -0.13 -0.91 10.00 -39.56 -0.40 -1.31 16 8 C 0.14 1.48 7.29 -38.98 -0.28 1.20 16 9 F -0.12 -1.46 16.83 2.25 0.04 -1.43 16 10 C -0.16 -1.82 5.64 -104.80 -0.59 -2.41 16 11 C 0.57 8.08 6.39 -12.53 -0.08 8.00 16 12 O -0.53 -8.91 16.53 5.28 0.09 -8.82 16 13 N -0.70 -9.25 5.07 -54.89 -0.28 -9.53 16 14 C 0.15 2.16 2.47 -67.93 -0.17 1.99 16 15 H 0.09 1.49 7.32 -51.93 -0.38 1.11 16 16 C -0.16 -1.92 9.29 37.16 0.35 -1.58 16 17 C -0.14 -2.32 3.67 -89.96 -0.33 -2.65 16 18 C 0.14 2.60 7.33 -8.50 -0.06 2.54 16 19 N -0.63 -15.58 3.69 -184.57 -0.68 -16.27 16 20 C -0.30 -8.88 11.08 -15.06 -0.17 -9.05 16 21 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 22 C -0.02 -0.74 5.50 -17.43 -0.10 -0.84 16 23 N -0.93 -29.89 13.70 55.49 0.76 -29.13 16 24 Si 1.07 27.38 25.16 -169.99 -4.28 23.10 16 25 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 26 H -0.29 -7.04 6.51 56.52 0.37 -6.67 16 27 H -0.29 -6.97 6.21 56.52 0.35 -6.62 16 28 C 0.10 2.18 5.27 -8.36 -0.04 2.13 16 29 H 0.06 0.62 7.90 -51.93 -0.41 0.21 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.16 0.51 8.06 -52.49 -0.42 0.09 16 33 H 0.16 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.40 4.56 8.59 -40.82 -0.35 4.21 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.83 7.48 -51.93 -0.39 0.44 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.10 1.55 8.14 -51.93 -0.42 1.12 16 39 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.04 0.73 8.10 -51.93 -0.42 0.31 16 41 H 0.26 8.21 8.73 -40.82 -0.36 7.86 16 42 H 0.05 0.98 7.44 -51.93 -0.39 0.59 16 43 H 0.05 1.14 4.73 -51.93 -0.25 0.89 16 LS Contribution 369.07 15.07 5.56 5.56 Total: -1.00 -35.42 369.07 -6.21 -41.63 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -5.62 Total: -0.15 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -1.65 Total: -0.13 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: -0.20 Total: -54.92 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: -0.10 Total: -12.55 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.08 Total: -2.54 kcal Atomic # 14 Polarization: 27.38 SS G_CDS: -4.28 Total: 23.10 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.42 -6.21 -41.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970264197.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.909 kcal (2) G-P(sol) polarization free energy of solvation -35.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds