Wall clock time and date at job start Sat Apr 11 2020 05:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35706 * 116.99788 * 2 1 4 4 C 1.38825 * 120.14852 * 270.25537 * 3 2 1 5 5 F 1.35101 * 119.94148 * 359.97438 * 4 3 2 6 6 C 1.38270 * 120.11631 * 180.26268 * 4 3 2 7 7 C 1.38453 * 120.40863 * 359.76014 * 6 4 3 8 8 C 1.38088 * 120.29004 * 359.97438 * 7 6 4 9 9 F 1.35100 * 120.06277 * 179.97438 * 8 7 6 10 10 C 1.39998 * 119.87474 * 359.97438 * 8 7 6 11 11 C 1.47392 * 120.19822 * 180.02562 * 10 8 7 12 12 O 1.21601 * 120.00087 * 89.99946 * 11 10 8 13 13 N 1.34780 * 119.99979 * 270.00459 * 11 10 8 14 14 C 1.46496 * 119.99734 * 180.02562 * 13 11 10 15 15 H 1.08995 * 109.47552 * 324.99740 * 14 13 11 16 16 C 1.53008 * 109.47421 * 84.99427 * 14 13 11 17 17 C 1.52998 * 109.46930 * 204.99506 * 14 13 11 18 18 C 1.53504 * 114.20785 * 179.97438 * 17 14 13 19 19 N 1.47069 * 87.98363 * 220.34571 * 18 17 14 20 20 C 1.36941 * 136.05552 * 207.07801 * 19 18 17 21 21 H 1.08000 * 119.99396 * 7.56018 * 20 19 18 22 22 C 1.38806 * 119.99993 * 187.55101 * 20 19 18 23 23 N 1.31621 * 119.99759 * 174.37714 * 22 20 19 24 24 Si 1.86799 * 119.99972 * 354.38427 * 22 20 19 25 25 H 1.48501 * 109.46963 * 174.94900 * 24 22 20 26 26 H 1.48498 * 109.47184 * 294.94894 * 24 22 20 27 27 H 1.48507 * 109.47082 * 54.95224 * 24 22 20 28 28 C 1.47064 * 87.88742 * 27.34488 * 19 18 17 29 29 H 1.08998 * 109.47060 * 299.99792 * 1 2 3 30 30 H 1.08992 * 109.47257 * 60.00055 * 1 2 3 31 31 H 1.09004 * 109.47034 * 179.97438 * 1 2 3 32 32 H 1.07997 * 119.79756 * 179.74239 * 6 4 3 33 33 H 1.08002 * 119.85538 * 179.97438 * 7 6 4 34 34 H 0.96996 * 120.00127 * 359.97438 * 13 11 10 35 35 H 1.09004 * 109.46240 * 60.00200 * 16 14 13 36 36 H 1.08998 * 109.47419 * 179.97438 * 16 14 13 37 37 H 1.08994 * 109.46942 * 300.00242 * 16 14 13 38 38 H 1.09002 * 113.41395 * 313.19707 * 17 14 13 39 39 H 1.08997 * 113.46758 * 105.56146 * 18 17 14 40 40 H 1.09000 * 113.51898 * 335.13170 * 18 17 14 41 41 H 0.96993 * 120.00423 * 354.88754 * 23 22 20 42 42 H 1.08993 * 113.47012 * 87.43421 * 28 19 18 43 43 H 1.09000 * 113.46758 * 217.87997 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 2.3568 1.8329 -1.2004 5 9 2.0468 1.2347 -2.3715 6 6 2.9894 3.0624 -1.1997 7 6 3.3125 3.6836 -0.0053 8 6 3.0053 3.0809 1.1986 9 9 3.3231 3.6909 2.3614 10 6 2.3639 1.8365 1.2118 11 6 2.0322 1.1870 2.4927 12 8 0.9593 1.4016 3.0233 13 7 2.9180 0.3554 3.0759 14 6 2.5880 -0.2906 4.3487 15 1 1.9929 0.3897 4.9579 16 6 1.7882 -1.5671 4.0806 17 6 3.8785 -0.6436 5.0910 18 6 3.6574 -1.3289 6.4467 19 7 4.7599 -0.5144 6.9796 20 6 5.6812 -0.6390 7.9850 21 1 5.7680 -1.5699 8.5255 22 6 6.5036 0.4312 8.3093 23 7 7.3110 0.3503 9.3457 24 14 6.4643 1.9862 7.2750 25 1 7.3365 3.0155 7.8956 26 1 6.9535 1.6828 5.9062 27 1 5.0717 2.4966 7.2013 28 6 4.4333 0.4957 5.9618 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.2333 3.5410 -2.1366 33 1 3.8069 4.6437 -0.0151 34 1 3.7737 0.1840 2.6525 35 1 2.3835 -2.2474 3.4714 36 1 1.5431 -2.0479 5.0276 37 1 0.8690 -1.3155 3.5517 38 1 4.6219 -1.1305 4.4598 39 1 3.8738 -2.3971 6.4335 40 1 2.6916 -1.1001 6.8973 41 1 7.2787 -0.4261 9.9262 42 1 3.6719 1.2060 6.2839 43 1 5.3108 0.9819 5.5355 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970264197.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:09 Heat of formation + Delta-G solvation = -92.964242 kcal Electronic energy + Delta-G solvation = -30123.168125 eV Core-core repulsion = 25613.420929 eV Total energy + Delta-G solvation = -4509.747195 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.20629 -50.07248 -41.70711 -40.70210 -39.70760 -38.39356 -36.40500 -34.57524 -32.97559 -31.44199 -31.02236 -29.51669 -28.13458 -27.12510 -25.89867 -25.05265 -23.78215 -22.88896 -21.78134 -21.16064 -19.67601 -19.56603 -19.08888 -18.92379 -17.92055 -17.69280 -17.36018 -17.16684 -17.05086 -16.61292 -16.14342 -16.01442 -15.93033 -15.69523 -15.61939 -15.43060 -15.17771 -14.96285 -14.42600 -14.20191 -13.82289 -13.69730 -13.36070 -13.32568 -13.27589 -13.19807 -12.95739 -12.61520 -12.55464 -12.39333 -12.14954 -11.77841 -11.47561 -11.33327 -11.15446 -11.10996 -10.87844 -10.31933 -10.22552 -9.77847 -9.25893 -8.64074 -5.50464 -0.52314 -0.38862 1.24682 1.34908 1.44619 1.63388 1.78395 1.97046 2.36132 2.50003 2.92630 2.95000 2.96959 3.15000 3.29884 3.47281 3.63725 3.74272 3.79414 4.01746 4.15012 4.26027 4.31118 4.32235 4.39661 4.52976 4.54147 4.58787 4.62533 4.64894 4.66477 4.75685 4.76154 4.82541 4.85768 4.97469 5.16004 5.25740 5.32526 5.34626 5.45869 5.92566 6.07077 6.30449 6.67339 6.95359 7.29719 8.24567 8.87642 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015856 B = 0.003280 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.484975 B = 8535.257420 C = 9721.063978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.338 6.338 3 C 0.115 3.885 4 C 0.066 3.934 5 F -0.127 7.127 6 C -0.073 4.073 7 C -0.112 4.112 8 C 0.122 3.878 9 F -0.134 7.134 10 C -0.175 4.175 11 C 0.572 3.428 12 O -0.562 6.562 13 N -0.698 5.698 14 C 0.159 3.841 15 H 0.073 0.927 16 C -0.149 4.149 17 C -0.104 4.104 18 C 0.133 3.867 19 N -0.661 5.661 20 C -0.291 4.291 21 H 0.054 0.946 22 C -0.084 4.084 23 N -0.971 5.971 24 Si 1.106 2.894 25 H -0.302 1.302 26 H -0.267 1.267 27 H -0.271 1.271 28 C 0.092 3.908 29 H 0.043 0.957 30 H 0.064 0.936 31 H 0.120 0.880 32 H 0.197 0.803 33 H 0.191 0.809 34 H 0.413 0.587 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.052 0.948 38 H 0.117 0.883 39 H 0.059 0.941 40 H 0.051 0.949 41 H 0.247 0.753 42 H 0.043 0.957 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.362 4.213 -29.717 32.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.254 6.254 3 C 0.069 3.931 4 C 0.046 3.954 5 F -0.105 7.105 6 C -0.092 4.092 7 C -0.131 4.131 8 C 0.102 3.898 9 F -0.112 7.112 10 C -0.180 4.180 11 C 0.358 3.642 12 O -0.441 6.441 13 N -0.347 5.347 14 C 0.054 3.946 15 H 0.091 0.909 16 C -0.207 4.207 17 C -0.124 4.124 18 C 0.007 3.993 19 N -0.390 5.390 20 C -0.418 4.418 21 H 0.072 0.928 22 C -0.276 4.276 23 N -0.616 5.616 24 Si 0.933 3.067 25 H -0.230 1.230 26 H -0.193 1.193 27 H -0.197 1.197 28 C -0.032 4.032 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.138 0.862 32 H 0.214 0.786 33 H 0.208 0.792 34 H 0.250 0.750 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.135 0.865 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -13.185 5.569 -29.309 32.617 hybrid contribution -0.366 -1.752 1.151 2.128 sum -13.551 3.817 -28.158 31.481 Atomic orbital electron populations 1.23314 0.76138 1.05441 1.01391 1.85980 1.22148 1.23218 1.94094 1.18383 0.98102 0.86940 0.89637 1.18006 1.03513 0.93704 0.80153 1.91540 1.91111 1.83344 1.44518 1.21483 0.94922 0.91605 1.01161 1.21382 1.00782 1.02767 0.88122 1.17803 0.98446 0.90418 0.83138 1.91582 1.90356 1.82059 1.47246 1.20100 1.07328 0.96593 0.93988 1.17921 0.84047 0.78400 0.83877 1.90799 1.24568 1.63622 1.65110 1.46006 1.20043 1.45323 1.23378 1.20901 0.95096 0.95120 0.83443 0.90922 1.22036 0.99601 0.96040 1.03048 1.23268 0.96698 0.97345 0.95105 1.22469 0.90706 0.96228 0.89897 1.46103 1.34061 1.21200 1.37624 1.20064 1.12782 0.98750 1.10250 0.92785 1.26972 0.96210 1.04113 1.00277 1.71006 1.42125 1.31941 1.16541 0.83279 0.76452 0.72788 0.74198 1.23038 1.19350 1.19674 1.23024 0.97660 0.93735 0.88814 0.93837 0.91740 0.86178 0.78623 0.79177 0.75027 0.90805 0.90454 0.92854 0.86462 0.92276 0.93090 0.94361 0.93974 0.93359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.13 113.37 1.26 1.76 16 2 O -0.34 -7.05 9.73 -90.27 -0.88 -7.93 16 3 C 0.12 2.26 5.74 22.87 0.13 2.40 16 4 C 0.07 0.98 7.30 22.42 0.16 1.14 16 5 F -0.13 -2.01 17.11 44.97 0.77 -1.24 16 6 C -0.07 -0.61 10.00 22.33 0.22 -0.38 16 7 C -0.11 -1.14 10.00 22.29 0.22 -0.92 16 8 C 0.12 2.33 7.29 22.66 0.17 2.50 16 9 F -0.13 -3.23 16.83 44.97 0.76 -2.47 16 10 C -0.18 -3.90 5.64 -19.98 -0.11 -4.01 16 11 C 0.57 15.81 6.39 86.65 0.55 16.36 16 12 O -0.56 -19.17 16.53 -4.04 -0.07 -19.24 16 13 N -0.70 -17.38 5.07 -445.84 -2.26 -19.65 16 14 C 0.16 4.28 2.47 44.99 0.11 4.39 16 15 H 0.07 2.29 7.32 -2.39 -0.02 2.28 16 16 C -0.15 -3.33 9.29 71.98 0.67 -2.67 16 17 C -0.10 -3.23 3.67 -10.37 -0.04 -3.27 16 18 C 0.13 4.88 7.33 83.18 0.61 5.49 16 19 N -0.66 -32.35 3.69 -737.86 -2.72 -35.07 16 20 C -0.29 -17.27 11.08 84.03 0.93 -16.34 16 21 H 0.05 3.43 8.06 -2.91 -0.02 3.41 16 22 C -0.08 -5.14 5.50 84.86 0.47 -4.67 16 23 N -0.97 -64.00 13.70 21.65 0.30 -63.70 16 24 Si 1.11 55.31 25.16 68.60 1.73 57.04 16 25 H -0.30 -15.39 7.11 99.48 0.71 -14.69 16 26 H -0.27 -12.07 6.51 99.48 0.65 -11.43 16 27 H -0.27 -12.67 6.21 99.48 0.62 -12.06 16 28 C 0.09 3.79 5.27 83.27 0.44 4.23 16 29 H 0.04 0.87 7.90 -2.39 -0.02 0.85 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.20 0.11 8.06 -2.91 -0.02 0.08 16 33 H 0.19 0.69 8.06 -2.91 -0.02 0.67 16 34 H 0.41 8.54 8.59 -92.71 -0.80 7.75 16 35 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.08 1.63 7.48 -2.39 -0.02 1.62 16 37 H 0.05 1.25 8.14 -2.39 -0.02 1.24 16 38 H 0.12 3.27 8.14 -2.39 -0.02 3.25 16 39 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.05 1.80 8.10 -2.39 -0.02 1.78 16 41 H 0.25 16.31 8.73 -92.71 -0.81 15.50 16 42 H 0.04 1.78 7.44 -2.39 -0.02 1.76 16 43 H 0.05 2.02 4.73 -2.39 -0.01 2.01 16 Total: -1.00 -80.04 369.07 3.49 -76.55 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: 0.08 Total: 9.72 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: 5.80 Total: 6.00 kcal Atomic # 7 Polarization: -113.73 SS G_CDS: -4.69 Total: -118.42 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.95 Total: -27.17 kcal Atomic # 9 Polarization: -5.24 SS G_CDS: 1.53 Total: -3.71 kcal Atomic # 14 Polarization: 55.31 SS G_CDS: 1.73 Total: 57.04 kcal Total: -80.04 3.49 -76.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970264197.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.416 kcal (2) G-P(sol) polarization free energy of solvation -80.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds