Wall clock time and date at job start Sat Apr 11 2020 05:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47188 * 2 1 4 4 C 1.52997 * 109.47492 * 120.00256 * 2 1 3 5 5 C 1.53000 * 109.47420 * 184.99835 * 4 2 1 6 6 N 1.46501 * 109.47053 * 180.02562 * 5 4 2 7 7 C 1.34777 * 119.99769 * 180.02562 * 6 5 4 8 8 O 1.21283 * 120.00044 * 359.97438 * 7 6 5 9 9 C 1.50706 * 119.99953 * 180.02562 * 7 6 5 10 10 N 1.46494 * 109.47023 * 179.97438 * 9 7 6 11 11 C 1.34954 * 126.03475 * 124.99747 * 10 9 7 12 12 C 1.35316 * 107.74368 * 179.73518 * 11 10 9 13 13 C 1.39868 * 107.92272 * 0.02562 * 12 11 10 14 14 N 1.30837 * 108.20148 * 359.97438 * 13 12 11 15 15 N 1.46499 * 109.47065 * 240.00543 * 2 1 3 16 16 C 1.34776 * 120.00561 * 84.99772 * 15 2 1 17 17 O 1.21286 * 119.99136 * 0.02562 * 16 15 2 18 18 C 1.50695 * 120.00614 * 180.02562 * 16 15 2 19 19 S 1.80997 * 109.47353 * 180.02562 * 18 16 15 20 20 C 1.76200 * 100.00034 * 180.02562 * 19 18 16 21 21 H 1.08000 * 119.99951 * 359.97438 * 20 19 18 22 22 C 1.38798 * 120.00050 * 180.02562 * 20 19 18 23 23 N 1.31631 * 120.00472 * 179.97438 * 22 20 19 24 24 Si 1.86806 * 119.99979 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.47062 * 90.00288 * 24 22 20 26 26 H 1.48493 * 109.47132 * 210.00404 * 24 22 20 27 27 H 1.48500 * 109.46904 * 330.00624 * 24 22 20 28 28 H 1.09000 * 109.47653 * 59.99676 * 1 2 3 29 29 H 1.08995 * 109.47376 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47011 * 299.99919 * 1 2 3 31 31 H 1.09007 * 109.46705 * 64.99690 * 4 2 1 32 32 H 1.08998 * 109.47386 * 305.00086 * 4 2 1 33 33 H 1.08993 * 109.46791 * 60.00337 * 5 4 2 34 34 H 1.08999 * 109.47034 * 299.99903 * 5 4 2 35 35 H 0.96996 * 120.00074 * 359.97438 * 6 5 4 36 36 H 1.08999 * 109.46800 * 59.99220 * 9 7 6 37 37 H 1.09007 * 109.46625 * 299.99540 * 9 7 6 38 38 H 1.07999 * 126.12395 * 359.71501 * 11 10 9 39 39 H 1.07999 * 126.03437 * 179.97438 * 12 11 10 40 40 H 1.08001 * 125.89990 * 179.97438 * 13 12 11 41 41 H 0.96999 * 119.99758 * 264.99993 * 15 2 1 42 42 H 1.08999 * 109.47000 * 300.00083 * 18 16 15 43 43 H 1.09000 * 109.46791 * 60.00006 * 18 16 15 44 44 H 0.96998 * 120.00374 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.6133 1.3136 6 7 4.0533 -1.3045 2.5094 7 6 5.3741 -1.3400 2.7750 8 8 6.1584 -0.8001 2.0237 9 6 5.8766 -2.0515 4.0048 10 7 7.3366 -1.9480 4.0665 11 6 8.0552 -1.4632 5.1008 12 6 9.3641 -1.5447 4.7678 13 6 9.4485 -2.0978 3.4859 14 7 8.2337 -2.3401 3.0646 15 7 2.0183 -0.6905 -1.1962 16 6 2.1470 -0.0182 -2.3572 17 8 1.8589 1.1588 -2.4114 18 6 2.6487 -0.7286 -3.5878 19 16 2.7104 0.4348 -4.9731 20 6 3.3120 -0.6308 -6.2409 21 1 3.5207 -1.6674 -6.0211 22 6 3.5187 -0.1377 -7.5218 23 7 3.9686 -0.9335 -8.4688 24 14 3.1584 1.6555 -7.9017 25 1 4.3783 2.4674 -7.6606 26 1 2.7488 1.7877 -9.3229 27 1 2.0619 2.1368 -7.0236 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7516 -1.7716 1.2054 32 1 1.6055 -0.2619 2.1369 33 1 3.8532 0.4369 1.3573 34 1 3.9995 -1.0728 0.4258 35 1 3.4260 -1.7360 3.1103 36 1 5.5886 -3.1018 3.9600 37 1 5.4417 -1.5930 4.8929 38 1 7.6567 -1.0786 6.0281 39 1 10.1966 -1.2364 5.3829 40 1 10.3591 -2.2914 2.9383 41 1 2.2490 -1.6316 -1.1527 42 1 3.6479 -1.1211 -3.3988 43 1 1.9758 -1.5503 -3.8327 44 1 4.1127 -0.5890 -9.3640 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075608604.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:35 Heat of formation + Delta-G solvation = 4.957460 kcal Electronic energy + Delta-G solvation = -25747.108531 eV Core-core repulsion = 21827.740677 eV Total energy + Delta-G solvation = -3919.367854 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.48342 -39.99825 -39.44891 -36.76412 -34.80182 -33.72056 -32.41769 -31.96445 -30.41100 -29.79347 -28.63996 -27.57630 -25.59224 -23.88954 -21.81193 -21.68058 -21.38071 -20.58499 -20.41885 -17.96942 -17.77653 -17.59209 -16.74443 -16.32709 -16.19538 -15.80874 -15.15700 -15.06766 -14.94149 -14.64056 -14.35071 -14.04887 -13.76665 -13.67641 -13.62707 -13.39468 -13.09659 -13.00875 -12.77652 -12.69020 -12.31282 -12.07405 -11.84177 -11.65160 -11.24645 -11.19355 -10.98646 -10.88784 -10.58398 -10.45408 -9.83875 -9.64825 -9.52593 -9.50918 -9.04658 -8.96891 -8.90164 -8.48291 -6.89497 -6.26580 -3.98234 1.55131 2.01712 2.15652 2.63918 2.71336 2.77187 2.96822 3.30477 3.36057 3.52088 3.66013 4.01217 4.16123 4.34288 4.35370 4.44341 4.48000 4.56648 4.63383 4.76966 4.77945 5.12063 5.12790 5.17464 5.23403 5.26001 5.31983 5.46787 5.47710 5.54796 5.64915 5.72121 5.78220 5.88798 5.94158 6.03244 6.07933 6.35775 6.54123 6.59392 6.98489 7.44389 7.58373 7.76608 7.96485 8.44165 8.48444 9.19536 10.82673 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011539 B = 0.002101 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.883619 B =13324.694498 C =15225.201542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.091 0.909 4 C -0.137 4.137 5 C 0.118 3.882 6 N -0.731 5.731 7 C 0.494 3.506 8 O -0.501 6.501 9 C 0.118 3.882 10 N -0.367 5.367 11 C 0.049 3.951 12 C -0.269 4.269 13 C 0.041 3.959 14 N -0.265 5.265 15 N -0.734 5.734 16 C 0.533 3.467 17 O -0.518 6.518 18 C -0.125 4.125 19 S -0.142 6.142 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.236 1.236 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.400 0.600 36 H 0.114 0.886 37 H 0.124 0.876 38 H 0.173 0.827 39 H 0.148 0.852 40 H 0.184 0.816 41 H 0.399 0.601 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.629 -4.791 33.925 34.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.109 0.891 4 C -0.175 4.175 5 C -0.005 4.005 6 N -0.385 5.385 7 C 0.278 3.722 8 O -0.373 6.373 9 C -0.008 4.008 10 N -0.150 5.150 11 C -0.096 4.096 12 C -0.298 4.298 13 C -0.146 4.146 14 N -0.086 5.086 15 N -0.389 5.389 16 C 0.319 3.681 17 O -0.393 6.393 18 C -0.276 4.276 19 S 0.085 5.915 20 C -0.668 4.668 21 H 0.106 0.894 22 C -0.114 4.114 23 N -0.517 5.517 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.234 0.766 36 H 0.132 0.868 37 H 0.142 0.858 38 H 0.190 0.810 39 H 0.166 0.834 40 H 0.201 0.799 41 H 0.233 0.767 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.331 -2.888 32.116 32.273 hybrid contribution 0.566 -1.082 0.661 1.389 sum -0.765 -3.970 32.777 33.025 Atomic orbital electron populations 1.22172 0.94894 1.02194 1.02857 1.20784 0.94222 0.97723 0.83160 0.89069 1.22106 0.94405 1.02171 0.98823 1.21431 0.93626 0.97975 0.87485 1.45907 1.06994 1.57888 1.27671 1.20565 0.82733 0.81436 0.87513 1.90859 1.54845 1.43445 1.48180 1.21429 0.77140 1.03380 0.98876 1.48079 1.05027 1.49261 1.12652 1.22526 0.92496 1.00539 0.94021 1.21520 0.96238 1.13158 0.98932 1.23982 0.96101 0.99256 0.95301 1.77548 0.99134 1.21283 1.10589 1.46091 1.69330 1.13971 1.09508 1.20276 0.76749 0.87212 0.83852 1.90697 1.48410 1.15714 1.84445 1.23286 1.04507 1.03477 0.96306 1.84768 1.87196 1.16837 1.02735 1.22317 1.50449 0.98742 0.95341 0.89390 1.24719 0.93373 0.98297 0.94969 1.69939 1.43392 1.35809 1.02558 0.86730 0.81113 0.84879 0.79093 1.19194 1.19956 1.15949 0.91447 0.92434 0.91820 0.90477 0.89667 0.91056 0.90709 0.76611 0.86798 0.85797 0.80970 0.83431 0.79942 0.76738 0.88496 0.88485 0.91953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.48 37.16 0.35 -1.10 16 2 C 0.15 1.41 2.57 -67.93 -0.17 1.23 16 3 H 0.09 1.08 7.58 -51.93 -0.39 0.69 16 4 C -0.14 -0.78 4.87 -26.73 -0.13 -0.91 16 5 C 0.12 0.97 5.56 -4.04 -0.02 0.95 16 6 N -0.73 -4.44 5.56 -60.29 -0.33 -4.78 16 7 C 0.49 4.58 7.86 -10.98 -0.09 4.50 16 8 O -0.50 -7.74 15.72 5.56 0.09 -7.65 16 9 C 0.12 0.65 6.99 -5.19 -0.04 0.62 16 10 N -0.37 -3.47 3.39 -62.54 -0.21 -3.68 16 11 C 0.05 0.36 11.45 -17.22 -0.20 0.16 16 12 C -0.27 -2.20 10.80 -40.01 -0.43 -2.63 16 13 C 0.04 0.42 12.03 -17.37 -0.21 0.21 16 14 N -0.27 -3.40 11.66 30.62 0.36 -3.04 16 15 N -0.73 -8.69 4.53 -53.81 -0.24 -8.94 16 16 C 0.53 9.29 7.81 -10.99 -0.09 9.21 16 17 O -0.52 -10.99 15.52 5.55 0.09 -10.91 16 18 C -0.13 -2.45 6.16 36.00 0.22 -2.22 16 19 S -0.14 -3.65 18.55 -107.50 -1.99 -5.64 16 20 C -0.52 -15.26 10.04 30.94 0.31 -14.95 16 21 H 0.09 2.69 8.03 -52.49 -0.42 2.26 16 22 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 23 N -0.88 -26.97 13.97 55.49 0.78 -26.19 16 24 Si 0.86 22.16 27.74 -169.99 -4.72 17.44 16 25 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 27 H -0.24 -6.06 6.74 56.52 0.38 -5.68 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.33 8.14 -51.92 -0.42 -0.09 16 32 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.80 7.75 -51.93 -0.40 0.39 16 35 H 0.40 0.81 8.47 -40.82 -0.35 0.47 16 36 H 0.11 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.12 0.15 8.07 -51.92 -0.42 -0.27 16 38 H 0.17 0.54 8.06 -52.49 -0.42 0.11 16 39 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.18 1.38 8.06 -52.49 -0.42 0.96 16 41 H 0.40 3.70 8.60 -40.82 -0.35 3.34 16 42 H 0.10 1.81 8.14 -51.92 -0.42 1.38 16 43 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 44 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 392.98 15.07 5.92 5.92 Total: -1.00 -41.83 392.98 -7.42 -49.25 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -6.56 Total: 0.43 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -0.59 Total: -2.22 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: 0.34 Total: -46.63 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: 0.17 Total: -18.55 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.72 Total: 17.44 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -41.83 -7.42 -49.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075608604.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.209 kcal (2) G-P(sol) polarization free energy of solvation -41.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds