Wall clock time and date at job start Sat Apr 11 2020 05:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47188 * 2 1 4 4 C 1.52997 * 109.47492 * 120.00256 * 2 1 3 5 5 C 1.53000 * 109.47420 * 184.99835 * 4 2 1 6 6 N 1.46501 * 109.47053 * 180.02562 * 5 4 2 7 7 C 1.34777 * 119.99769 * 180.02562 * 6 5 4 8 8 O 1.21283 * 120.00044 * 359.97438 * 7 6 5 9 9 C 1.50706 * 119.99953 * 180.02562 * 7 6 5 10 10 N 1.46494 * 109.47023 * 179.97438 * 9 7 6 11 11 C 1.34954 * 126.03475 * 124.99747 * 10 9 7 12 12 C 1.35316 * 107.74368 * 179.73518 * 11 10 9 13 13 C 1.39868 * 107.92272 * 0.02562 * 12 11 10 14 14 N 1.30837 * 108.20148 * 359.97438 * 13 12 11 15 15 N 1.46499 * 109.47065 * 240.00543 * 2 1 3 16 16 C 1.34776 * 120.00561 * 84.99772 * 15 2 1 17 17 O 1.21286 * 119.99136 * 0.02562 * 16 15 2 18 18 C 1.50695 * 120.00614 * 180.02562 * 16 15 2 19 19 S 1.80997 * 109.47353 * 180.02562 * 18 16 15 20 20 C 1.76200 * 100.00034 * 180.02562 * 19 18 16 21 21 H 1.08000 * 119.99951 * 359.97438 * 20 19 18 22 22 C 1.38798 * 120.00050 * 180.02562 * 20 19 18 23 23 N 1.31631 * 120.00472 * 179.97438 * 22 20 19 24 24 Si 1.86806 * 119.99979 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.47062 * 90.00288 * 24 22 20 26 26 H 1.48493 * 109.47132 * 210.00404 * 24 22 20 27 27 H 1.48500 * 109.46904 * 330.00624 * 24 22 20 28 28 H 1.09000 * 109.47653 * 59.99676 * 1 2 3 29 29 H 1.08995 * 109.47376 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47011 * 299.99919 * 1 2 3 31 31 H 1.09007 * 109.46705 * 64.99690 * 4 2 1 32 32 H 1.08998 * 109.47386 * 305.00086 * 4 2 1 33 33 H 1.08993 * 109.46791 * 60.00337 * 5 4 2 34 34 H 1.08999 * 109.47034 * 299.99903 * 5 4 2 35 35 H 0.96996 * 120.00074 * 359.97438 * 6 5 4 36 36 H 1.08999 * 109.46800 * 59.99220 * 9 7 6 37 37 H 1.09007 * 109.46625 * 299.99540 * 9 7 6 38 38 H 1.07999 * 126.12395 * 359.71501 * 11 10 9 39 39 H 1.07999 * 126.03437 * 179.97438 * 12 11 10 40 40 H 1.08001 * 125.89990 * 179.97438 * 13 12 11 41 41 H 0.96999 * 119.99758 * 264.99993 * 15 2 1 42 42 H 1.08999 * 109.47000 * 300.00083 * 18 16 15 43 43 H 1.09000 * 109.46791 * 60.00006 * 18 16 15 44 44 H 0.96998 * 120.00374 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.6133 1.3136 6 7 4.0533 -1.3045 2.5094 7 6 5.3741 -1.3400 2.7750 8 8 6.1584 -0.8001 2.0237 9 6 5.8766 -2.0515 4.0048 10 7 7.3366 -1.9480 4.0665 11 6 8.0552 -1.4632 5.1008 12 6 9.3641 -1.5447 4.7678 13 6 9.4485 -2.0978 3.4859 14 7 8.2337 -2.3401 3.0646 15 7 2.0183 -0.6905 -1.1962 16 6 2.1470 -0.0182 -2.3572 17 8 1.8589 1.1588 -2.4114 18 6 2.6487 -0.7286 -3.5878 19 16 2.7104 0.4348 -4.9731 20 6 3.3120 -0.6308 -6.2409 21 1 3.5207 -1.6674 -6.0211 22 6 3.5187 -0.1377 -7.5218 23 7 3.9686 -0.9335 -8.4688 24 14 3.1584 1.6555 -7.9017 25 1 4.3783 2.4674 -7.6606 26 1 2.7488 1.7877 -9.3229 27 1 2.0619 2.1368 -7.0236 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7516 -1.7716 1.2054 32 1 1.6055 -0.2619 2.1369 33 1 3.8532 0.4369 1.3573 34 1 3.9995 -1.0728 0.4258 35 1 3.4260 -1.7360 3.1103 36 1 5.5886 -3.1018 3.9600 37 1 5.4417 -1.5930 4.8929 38 1 7.6567 -1.0786 6.0281 39 1 10.1966 -1.2364 5.3829 40 1 10.3591 -2.2914 2.9383 41 1 2.2490 -1.6316 -1.1527 42 1 3.6479 -1.1211 -3.3988 43 1 1.9758 -1.5503 -3.8327 44 1 4.1127 -0.5890 -9.3640 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075608604.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:34 Heat of formation + Delta-G solvation = -28.875182 kcal Electronic energy + Delta-G solvation = -25748.575624 eV Core-core repulsion = 21827.740677 eV Total energy + Delta-G solvation = -3920.834947 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.08881 -40.95413 -40.47869 -37.72004 -35.67346 -34.70157 -34.31753 -33.07840 -31.06402 -30.66197 -29.85733 -28.12771 -27.87999 -24.59857 -22.61199 -22.46656 -21.94783 -21.66355 -21.18347 -19.91834 -18.46076 -18.23893 -18.00229 -17.40380 -17.10023 -16.86234 -16.63317 -16.40761 -16.02200 -15.67293 -15.29853 -15.04697 -14.85136 -14.77150 -14.64601 -14.33812 -14.32447 -14.01654 -13.63459 -13.39246 -13.36660 -13.16049 -13.08796 -13.02975 -12.64091 -12.45723 -12.40584 -11.93001 -11.88189 -11.55339 -11.22063 -11.20074 -10.98758 -10.57516 -10.33986 -10.22891 -10.10559 -9.49896 -9.02702 -8.54288 -6.25346 0.96258 0.96833 1.29151 1.43986 1.50340 1.53575 1.54608 1.55515 1.99562 2.14489 2.20828 2.25468 2.69103 2.83682 3.55039 3.71844 3.76060 3.84363 3.95970 4.05399 4.09541 4.17241 4.18704 4.25937 4.41500 4.42704 4.47398 4.62279 4.72411 4.81631 4.88156 4.92498 5.02142 5.12522 5.16339 5.32919 5.35078 5.52918 5.67865 5.72511 6.08297 6.12709 6.45216 6.50925 6.80025 6.90570 7.19317 7.20896 8.58254 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011539 B = 0.002101 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.883619 B =13324.694498 C =15225.201542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.141 3.859 3 H 0.065 0.935 4 C -0.116 4.116 5 C 0.119 3.881 6 N -0.707 5.707 7 C 0.488 3.512 8 O -0.574 6.574 9 C 0.115 3.885 10 N -0.376 5.376 11 C 0.058 3.942 12 C -0.287 4.287 13 C 0.022 3.978 14 N -0.329 5.329 15 N -0.710 5.710 16 C 0.536 3.464 17 O -0.562 6.562 18 C -0.114 4.114 19 S -0.175 6.175 20 C -0.530 4.530 21 H 0.061 0.939 22 C 0.044 3.956 23 N -0.917 5.917 24 Si 0.916 3.084 25 H -0.264 1.264 26 H -0.256 1.256 27 H -0.236 1.236 28 H 0.030 0.970 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.119 0.881 33 H 0.045 0.955 34 H 0.046 0.954 35 H 0.425 0.575 36 H 0.139 0.861 37 H 0.178 0.822 38 H 0.220 0.780 39 H 0.168 0.832 40 H 0.192 0.808 41 H 0.414 0.586 42 H 0.105 0.895 43 H 0.115 0.885 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.498 -5.167 37.859 38.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.036 3.964 3 H 0.083 0.917 4 C -0.154 4.154 5 C -0.005 4.005 6 N -0.362 5.362 7 C 0.274 3.726 8 O -0.452 6.452 9 C -0.009 4.009 10 N -0.159 5.159 11 C -0.087 4.087 12 C -0.316 4.316 13 C -0.164 4.164 14 N -0.150 5.150 15 N -0.364 5.364 16 C 0.321 3.679 17 O -0.440 6.440 18 C -0.265 4.265 19 S 0.051 5.949 20 C -0.678 4.678 21 H 0.079 0.921 22 C -0.161 4.161 23 N -0.554 5.554 24 Si 0.738 3.262 25 H -0.189 1.189 26 H -0.180 1.180 27 H -0.160 1.160 28 H 0.050 0.950 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.125 0.875 32 H 0.137 0.863 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.263 0.737 36 H 0.157 0.843 37 H 0.195 0.805 38 H 0.236 0.764 39 H 0.186 0.814 40 H 0.209 0.791 41 H 0.251 0.749 42 H 0.124 0.876 43 H 0.133 0.867 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.250 -3.342 36.116 36.416 hybrid contribution 1.128 -1.069 -0.393 1.603 sum -2.122 -4.411 35.723 36.056 Atomic orbital electron populations 1.22119 0.93663 1.03290 1.02427 1.21031 0.95099 0.96845 0.83424 0.91688 1.22006 0.91982 1.03710 0.97724 1.21261 0.95429 0.96412 0.87413 1.45671 1.06688 1.56746 1.27066 1.21347 0.82904 0.80443 0.87939 1.90838 1.56770 1.46768 1.50819 1.21871 0.75422 1.04796 0.98790 1.48377 1.06173 1.48983 1.12368 1.23294 0.92140 0.98565 0.94718 1.21895 0.97774 1.13559 0.98421 1.24366 0.96092 0.99413 0.96565 1.77436 1.00540 1.23815 1.13191 1.45923 1.67333 1.14588 1.08547 1.19886 0.76753 0.86587 0.84644 1.90684 1.50760 1.17372 1.85164 1.23292 1.05823 1.02415 0.94935 1.84666 1.86960 1.18772 1.04475 1.22461 1.50362 0.98167 0.96783 0.92108 1.25595 0.93215 1.02416 0.94907 1.70016 1.44422 1.37770 1.03237 0.85849 0.80946 0.79786 0.79663 1.18903 1.18040 1.15987 0.95040 0.90499 0.89150 0.87540 0.86292 0.93672 0.93589 0.73657 0.84310 0.80498 0.76386 0.81431 0.79121 0.74866 0.87626 0.86705 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 9.48 71.98 0.68 -1.69 16 2 C 0.14 2.41 2.57 44.99 0.12 2.53 16 3 H 0.06 1.52 7.58 -2.39 -0.02 1.50 16 4 C -0.12 -0.89 4.87 30.59 0.15 -0.74 16 5 C 0.12 1.79 5.56 86.38 0.48 2.28 16 6 N -0.71 -6.67 5.56 -463.06 -2.57 -9.24 16 7 C 0.49 8.37 7.86 87.66 0.69 9.06 16 8 O -0.57 -18.32 15.72 -3.04 -0.05 -18.37 16 9 C 0.12 0.92 6.99 85.64 0.60 1.52 16 10 N -0.38 -6.51 3.39 -351.79 -1.19 -7.70 16 11 C 0.06 0.70 11.45 83.54 0.96 1.66 16 12 C -0.29 -4.43 10.80 21.99 0.24 -4.19 16 13 C 0.02 0.47 12.03 85.24 1.02 1.49 16 14 N -0.33 -8.65 11.66 -57.02 -0.66 -9.31 16 15 N -0.71 -15.86 4.53 -442.54 -2.00 -17.87 16 16 C 0.54 18.62 7.81 87.66 0.68 19.31 16 17 O -0.56 -24.22 15.52 -3.05 -0.05 -24.27 16 18 C -0.11 -4.45 6.16 71.23 0.44 -4.01 16 19 S -0.18 -9.16 18.55 -56.49 -1.05 -10.21 16 20 C -0.53 -31.85 10.04 67.95 0.68 -31.17 16 21 H 0.06 3.85 8.03 -2.91 -0.02 3.83 16 22 C 0.04 2.66 5.50 84.86 0.47 3.12 16 23 N -0.92 -57.14 13.97 21.65 0.30 -56.84 16 24 Si 0.92 46.28 27.74 68.60 1.90 48.18 16 25 H -0.26 -13.13 7.11 99.48 0.71 -12.42 16 26 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 27 H -0.24 -11.87 6.74 99.48 0.67 -11.20 16 28 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.11 0.31 8.14 -2.38 -0.02 0.29 16 32 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 33 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.05 0.97 7.75 -2.39 -0.02 0.95 16 35 H 0.42 -0.28 8.47 -92.71 -0.79 -1.07 16 36 H 0.14 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.18 -0.57 8.07 -2.38 -0.02 -0.59 16 38 H 0.22 0.32 8.06 -2.91 -0.02 0.30 16 39 H 0.17 1.67 8.06 -2.91 -0.02 1.64 16 40 H 0.19 3.20 8.06 -2.91 -0.02 3.17 16 41 H 0.41 6.75 8.60 -92.71 -0.80 5.96 16 42 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 43 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 44 H 0.28 15.96 8.31 -92.71 -0.77 15.19 16 Total: -1.00 -99.49 392.98 1.24 -98.26 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -0.59 Total: 8.21 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: 7.21 Total: -0.84 kcal Atomic # 7 Polarization: -94.84 SS G_CDS: -6.13 Total: -100.97 kcal Atomic # 8 Polarization: -42.54 SS G_CDS: -0.10 Total: -42.64 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 1.90 Total: 48.18 kcal Atomic # 16 Polarization: -9.16 SS G_CDS: -1.05 Total: -10.21 kcal Total: -99.49 1.24 -98.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075608604.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.380 kcal (2) G-P(sol) polarization free energy of solvation -99.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds