Wall clock time and date at job start Sat Apr 11 2020 05:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47152 * 2 1 4 4 C 1.52997 * 109.47069 * 119.99755 * 2 1 3 5 5 C 1.53001 * 109.47265 * 185.00584 * 4 2 1 6 6 N 1.46499 * 109.47143 * 180.02562 * 5 4 2 7 7 C 1.34782 * 119.99796 * 179.97438 * 6 5 4 8 8 O 1.21279 * 120.00138 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99771 * 179.97438 * 7 6 5 10 10 S 1.80995 * 109.46729 * 179.97438 * 9 7 6 11 11 C 1.76203 * 99.99757 * 180.02562 * 10 9 7 12 12 H 1.07998 * 120.00119 * 359.97438 * 11 10 9 13 13 C 1.38804 * 119.99870 * 180.02562 * 11 10 9 14 14 N 1.31626 * 120.00150 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99668 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47774 * 59.99794 * 15 13 11 17 17 H 1.48508 * 109.47224 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47261 * 299.99366 * 15 13 11 19 19 N 1.46494 * 109.47233 * 239.99841 * 2 1 3 20 20 C 1.34784 * 119.99901 * 85.00158 * 19 2 1 21 21 O 1.21629 * 119.99916 * 359.97438 * 20 19 2 22 22 C 1.47323 * 120.00183 * 179.97438 * 20 19 2 23 23 C 1.36413 * 126.23760 * 179.97438 * 22 20 19 24 24 N 1.35378 * 106.87154 * 180.02562 * 23 22 20 25 25 C 1.46506 * 126.13337 * 179.97438 * 24 23 22 26 26 C 1.35842 * 107.73191 * 0.26836 * 24 23 22 27 27 N 1.30181 * 109.00180 * 359.55150 * 26 24 23 28 28 H 1.08997 * 109.47041 * 60.00334 * 1 2 3 29 29 H 1.09003 * 109.47152 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47129 * 300.00012 * 1 2 3 31 31 H 1.09001 * 109.47245 * 305.00237 * 4 2 1 32 32 H 1.08999 * 109.47108 * 65.00301 * 4 2 1 33 33 H 1.09001 * 109.46706 * 299.99983 * 5 4 2 34 34 H 1.08999 * 109.47289 * 59.99828 * 5 4 2 35 35 H 0.96996 * 119.99821 * 359.97438 * 6 5 4 36 36 H 1.09001 * 109.47307 * 299.99960 * 9 7 6 37 37 H 1.08999 * 109.47192 * 60.00114 * 9 7 6 38 38 H 0.96998 * 119.99921 * 179.97438 * 14 13 11 39 39 H 0.96993 * 120.00132 * 264.99419 * 19 2 1 40 40 H 1.08005 * 126.56276 * 0.04337 * 23 22 20 41 41 H 1.09001 * 109.47060 * 90.00840 * 25 24 23 42 42 H 1.09004 * 109.47073 * 210.00329 * 25 24 23 43 43 H 1.09000 * 109.47212 * 330.00411 * 25 24 23 44 44 H 1.07999 * 125.50593 * 179.71850 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6131 1.3138 6 7 4.0532 -1.3042 2.5097 7 6 5.3741 -1.3404 2.7749 8 8 6.1585 -0.8013 2.0232 9 6 5.8764 -2.0508 4.0054 10 16 7.6804 -1.9243 4.0807 11 6 7.9874 -2.8141 5.5703 12 1 7.1637 -3.2361 6.1269 13 6 9.2880 -2.9718 6.0290 14 7 10.2919 -2.4571 5.3510 15 14 9.6134 -3.9144 7.6085 16 1 9.1116 -5.3050 7.4675 17 1 11.0736 -3.9406 7.8775 18 1 8.9138 -3.2477 8.7360 19 7 2.0183 -0.6906 -1.1961 20 6 2.1471 -0.0182 -2.3571 21 8 1.8574 1.1618 -2.4118 22 6 2.6387 -0.7125 -3.5599 23 6 2.8167 -0.1595 -4.7941 24 7 3.2796 -1.1423 -5.6020 25 6 3.6131 -1.0077 -7.0222 26 6 3.3731 -2.2771 -4.8612 27 7 2.9966 -2.0196 -3.6419 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6053 -0.2617 2.1370 32 1 1.7517 -1.7714 1.2056 33 1 3.9995 -1.0726 0.4261 34 1 3.8531 0.4371 1.3575 35 1 3.4258 -1.7357 3.1106 36 1 5.4422 -1.5910 4.8931 37 1 5.5877 -3.1010 3.9619 38 1 11.2007 -2.5670 5.6717 39 1 2.2491 -1.6317 -1.1525 40 1 2.6254 0.8662 -5.0732 41 1 4.6610 -0.7257 -7.1242 42 1 3.4420 -1.9584 -7.5273 43 1 2.9845 -0.2391 -7.4718 44 1 3.7084 -3.2373 -5.2244 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075675823.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:46 Heat of formation + Delta-G solvation = -21.915970 kcal Electronic energy + Delta-G solvation = -25689.077429 eV Core-core repulsion = 21768.544256 eV Total energy + Delta-G solvation = -3920.533173 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.51689 -39.76855 -39.00913 -36.66107 -34.60471 -34.28558 -32.39900 -31.75926 -30.22771 -29.86927 -28.05037 -27.66740 -25.46048 -24.18370 -23.06653 -21.68152 -21.12029 -20.36751 -20.18904 -18.28814 -17.77850 -16.67151 -16.43706 -16.29664 -16.04731 -15.84716 -15.29473 -14.91000 -14.77608 -14.68734 -14.27579 -14.03058 -13.91980 -13.81228 -13.65224 -13.35869 -13.32226 -13.09423 -12.74757 -12.52545 -12.25113 -12.09318 -11.53358 -11.43783 -11.15426 -11.01414 -11.01352 -10.73928 -10.66991 -10.18977 -10.18085 -9.79290 -9.37465 -9.26100 -9.03364 -8.94025 -8.79634 -8.19727 -6.46303 -6.18409 -3.88756 1.28434 2.09359 2.19938 3.07310 3.08314 3.17503 3.25672 3.29643 3.33867 3.37305 3.75314 4.07733 4.13975 4.23562 4.38575 4.52554 4.56376 4.65185 4.80096 4.81618 4.87090 5.09602 5.16395 5.16933 5.19909 5.31099 5.42056 5.49332 5.61846 5.67221 5.71519 5.86530 5.94863 5.96617 6.04337 6.06390 6.18311 6.35603 6.58485 6.68234 7.26384 7.55690 7.62187 7.77917 8.12165 8.38088 8.68966 9.26545 10.88969 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014510 B = 0.001902 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.209711 B =14718.223454 C =16116.914654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.146 3.854 3 H 0.093 0.907 4 C -0.139 4.139 5 C 0.120 3.880 6 N -0.739 5.739 7 C 0.530 3.470 8 O -0.517 6.517 9 C -0.153 4.153 10 S -0.061 6.061 11 C -0.536 4.536 12 H 0.072 0.928 13 C 0.073 3.927 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 N -0.711 5.711 20 C 0.608 3.392 21 O -0.547 6.547 22 C -0.065 4.065 23 C 0.033 3.967 24 N -0.461 5.461 25 C 0.069 3.931 26 C 0.187 3.813 27 N -0.462 5.462 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.397 0.603 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.269 0.731 39 H 0.409 0.591 40 H 0.188 0.812 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.729 1.252 -22.564 31.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.111 0.889 4 C -0.177 4.177 5 C -0.004 4.004 6 N -0.394 5.394 7 C 0.316 3.684 8 O -0.391 6.391 9 C -0.304 4.304 10 S 0.166 5.834 11 C -0.684 4.684 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.200 1.200 17 H -0.208 1.208 18 H -0.199 1.199 19 N -0.363 5.363 20 C 0.394 3.606 21 O -0.424 6.424 22 C -0.194 4.194 23 C -0.106 4.106 24 N -0.143 5.143 25 C -0.073 4.073 26 C -0.097 4.097 27 N -0.181 5.181 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.231 0.769 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.245 0.755 40 H 0.205 0.795 41 H 0.101 0.899 42 H 0.111 0.889 43 H 0.108 0.892 44 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -20.405 2.486 -23.330 31.094 hybrid contribution -0.763 -1.449 1.398 2.153 sum -21.167 1.037 -21.932 30.498 Atomic orbital electron populations 1.22163 0.94823 1.02275 1.02715 1.20904 0.94141 0.97751 0.83146 0.88857 1.22118 0.95449 1.02011 0.98136 1.21268 0.92667 0.97941 0.88498 1.45990 1.07780 1.58557 1.27092 1.20307 0.81527 0.79756 0.86797 1.90709 1.54955 1.44388 1.49057 1.23529 1.06775 1.02551 0.97506 1.85412 0.92273 1.72654 1.33075 1.22835 0.95433 1.40183 1.09937 0.90979 1.24996 0.95054 0.95677 0.97898 1.70010 0.99380 1.42605 1.38315 0.86224 0.77332 0.79938 0.81989 1.19953 1.20835 1.19949 1.45875 1.66745 1.14635 1.09016 1.16866 0.76582 0.85388 0.81763 1.90794 1.51506 1.15120 1.84983 1.20561 1.12462 0.91799 0.94542 1.22608 1.01896 0.95453 0.90614 1.45368 1.48130 1.09766 1.11043 1.22172 1.02894 1.04874 0.77345 1.25228 1.05035 0.92468 0.86966 1.70615 1.15264 1.13932 1.18261 0.91919 0.92346 0.91413 0.89433 0.90483 0.91455 0.91587 0.76890 0.89247 0.89246 0.92155 0.75522 0.79498 0.89887 0.88928 0.89244 0.77101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 9.48 37.16 0.35 -0.92 16 2 C 0.15 1.35 2.57 -67.93 -0.17 1.17 16 3 H 0.09 1.02 7.58 -51.93 -0.39 0.62 16 4 C -0.14 -1.14 4.87 -26.73 -0.13 -1.27 16 5 C 0.12 1.49 5.56 -4.04 -0.02 1.47 16 6 N -0.74 -10.14 5.56 -60.29 -0.33 -10.48 16 7 C 0.53 10.28 7.85 -10.98 -0.09 10.20 16 8 O -0.52 -12.33 15.86 5.56 0.09 -12.24 16 9 C -0.15 -3.16 6.16 36.01 0.22 -2.93 16 10 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 11 C -0.54 -15.47 9.50 30.94 0.29 -15.17 16 12 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 13 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 14 N -0.87 -26.50 13.22 55.49 0.73 -25.77 16 15 Si 0.92 21.62 29.55 -169.99 -5.02 16.59 16 16 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 19 N -0.71 -7.48 4.53 -54.91 -0.25 -7.73 16 20 C 0.61 7.65 7.78 -12.56 -0.10 7.55 16 21 O -0.55 -8.14 16.54 5.25 0.09 -8.05 16 22 C -0.06 -0.74 6.98 -83.09 -0.58 -1.32 16 23 C 0.03 0.29 11.26 -16.65 -0.19 0.10 16 24 N -0.46 -2.88 3.13 -125.77 -0.39 -3.27 16 25 C 0.07 0.11 11.15 59.85 0.67 0.78 16 26 C 0.19 1.39 12.55 -89.91 -1.13 0.26 16 27 N -0.46 -5.01 11.01 -11.03 -0.12 -5.14 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.94 7.75 -51.93 -0.40 0.54 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.40 4.11 8.47 -40.82 -0.35 3.76 16 36 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 37 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 38 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 39 H 0.41 4.06 8.31 -40.82 -0.34 3.72 16 40 H 0.19 1.29 8.06 -52.48 -0.42 0.87 16 41 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 42 H 0.09 -0.02 8.14 -51.93 -0.42 -0.45 16 43 H 0.09 0.04 8.14 -51.93 -0.42 -0.38 16 44 H 0.21 0.75 8.06 -52.49 -0.42 0.32 16 LS Contribution 396.40 15.07 5.97 5.97 Total: -1.00 -39.98 396.40 -8.94 -48.92 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -6.52 Total: 3.14 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -0.97 Total: 1.94 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: -0.36 Total: -52.38 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: 0.18 Total: -20.29 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -39.98 -8.94 -48.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075675823.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.003 kcal (2) G-P(sol) polarization free energy of solvation -39.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds