Wall clock time and date at job start Sat Apr 11 2020 05:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47152 * 2 1 4 4 C 1.52997 * 109.47069 * 119.99755 * 2 1 3 5 5 C 1.53001 * 109.47265 * 185.00584 * 4 2 1 6 6 N 1.46499 * 109.47143 * 180.02562 * 5 4 2 7 7 C 1.34782 * 119.99796 * 179.97438 * 6 5 4 8 8 O 1.21279 * 120.00138 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99771 * 179.97438 * 7 6 5 10 10 S 1.80995 * 109.46729 * 179.97438 * 9 7 6 11 11 C 1.76203 * 99.99757 * 180.02562 * 10 9 7 12 12 H 1.07998 * 120.00119 * 359.97438 * 11 10 9 13 13 C 1.38804 * 119.99870 * 180.02562 * 11 10 9 14 14 N 1.31626 * 120.00150 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99668 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47774 * 59.99794 * 15 13 11 17 17 H 1.48508 * 109.47224 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47261 * 299.99366 * 15 13 11 19 19 N 1.46494 * 109.47233 * 239.99841 * 2 1 3 20 20 C 1.34784 * 119.99901 * 85.00158 * 19 2 1 21 21 O 1.21629 * 119.99916 * 359.97438 * 20 19 2 22 22 C 1.47323 * 120.00183 * 179.97438 * 20 19 2 23 23 C 1.36413 * 126.23760 * 179.97438 * 22 20 19 24 24 N 1.35378 * 106.87154 * 180.02562 * 23 22 20 25 25 C 1.46506 * 126.13337 * 179.97438 * 24 23 22 26 26 C 1.35842 * 107.73191 * 0.26836 * 24 23 22 27 27 N 1.30181 * 109.00180 * 359.55150 * 26 24 23 28 28 H 1.08997 * 109.47041 * 60.00334 * 1 2 3 29 29 H 1.09003 * 109.47152 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47129 * 300.00012 * 1 2 3 31 31 H 1.09001 * 109.47245 * 305.00237 * 4 2 1 32 32 H 1.08999 * 109.47108 * 65.00301 * 4 2 1 33 33 H 1.09001 * 109.46706 * 299.99983 * 5 4 2 34 34 H 1.08999 * 109.47289 * 59.99828 * 5 4 2 35 35 H 0.96996 * 119.99821 * 359.97438 * 6 5 4 36 36 H 1.09001 * 109.47307 * 299.99960 * 9 7 6 37 37 H 1.08999 * 109.47192 * 60.00114 * 9 7 6 38 38 H 0.96998 * 119.99921 * 179.97438 * 14 13 11 39 39 H 0.96993 * 120.00132 * 264.99419 * 19 2 1 40 40 H 1.08005 * 126.56276 * 0.04337 * 23 22 20 41 41 H 1.09001 * 109.47060 * 90.00840 * 25 24 23 42 42 H 1.09004 * 109.47073 * 210.00329 * 25 24 23 43 43 H 1.09000 * 109.47212 * 330.00411 * 25 24 23 44 44 H 1.07999 * 125.50593 * 179.71850 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6131 1.3138 6 7 4.0532 -1.3042 2.5097 7 6 5.3741 -1.3404 2.7749 8 8 6.1585 -0.8013 2.0232 9 6 5.8764 -2.0508 4.0054 10 16 7.6804 -1.9243 4.0807 11 6 7.9874 -2.8141 5.5703 12 1 7.1637 -3.2361 6.1269 13 6 9.2880 -2.9718 6.0290 14 7 10.2919 -2.4571 5.3510 15 14 9.6134 -3.9144 7.6085 16 1 9.1116 -5.3050 7.4675 17 1 11.0736 -3.9406 7.8775 18 1 8.9138 -3.2477 8.7360 19 7 2.0183 -0.6906 -1.1961 20 6 2.1471 -0.0182 -2.3571 21 8 1.8574 1.1618 -2.4118 22 6 2.6387 -0.7125 -3.5599 23 6 2.8167 -0.1595 -4.7941 24 7 3.2796 -1.1423 -5.6020 25 6 3.6131 -1.0077 -7.0222 26 6 3.3731 -2.2771 -4.8612 27 7 2.9966 -2.0196 -3.6419 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6053 -0.2617 2.1370 32 1 1.7517 -1.7714 1.2056 33 1 3.9995 -1.0726 0.4261 34 1 3.8531 0.4371 1.3575 35 1 3.4258 -1.7357 3.1106 36 1 5.4422 -1.5910 4.8931 37 1 5.5877 -3.1010 3.9619 38 1 11.2007 -2.5670 5.6717 39 1 2.2491 -1.6317 -1.1525 40 1 2.6254 0.8662 -5.0732 41 1 4.6610 -0.7257 -7.1242 42 1 3.4420 -1.9584 -7.5273 43 1 2.9845 -0.2391 -7.4718 44 1 3.7084 -3.2373 -5.2244 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075675823.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:45 Heat of formation + Delta-G solvation = -51.662103 kcal Electronic energy + Delta-G solvation = -25690.367318 eV Core-core repulsion = 21768.544256 eV Total energy + Delta-G solvation = -3921.823062 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.11946 -40.79692 -40.36523 -37.64073 -35.59119 -35.07074 -34.57684 -32.72339 -31.38259 -30.67192 -29.20532 -28.02615 -27.64427 -24.98509 -23.98749 -22.31206 -21.99810 -21.48246 -21.18414 -19.83568 -18.89360 -17.79345 -17.52823 -17.25052 -16.89245 -16.87036 -16.81914 -16.60316 -15.88105 -15.61105 -15.42872 -15.07773 -14.86696 -14.77844 -14.61245 -14.45643 -14.38813 -13.77805 -13.55765 -13.47134 -13.43872 -13.16325 -12.97795 -12.85743 -12.65737 -12.43474 -12.39284 -11.93293 -11.73273 -11.40455 -11.12063 -11.07110 -10.96048 -10.72949 -10.27045 -10.20928 -10.07639 -9.60764 -8.66695 -8.33585 -6.12235 0.56334 1.27496 1.43981 1.44959 1.47580 1.57474 1.61681 1.74655 2.26146 2.29910 2.32612 2.53845 3.00287 3.32701 3.43473 3.74236 3.81309 3.88834 3.99435 4.04150 4.09130 4.21970 4.31657 4.42923 4.44785 4.47703 4.51424 4.51893 4.62219 4.75444 4.83795 4.88989 5.03523 5.06056 5.12852 5.32216 5.41944 5.42173 5.43032 5.55370 6.09604 6.20539 6.48150 6.53310 6.85450 7.07219 7.24454 7.26529 8.75488 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014510 B = 0.001902 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.209711 B =14718.223454 C =16116.914654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.143 3.857 3 H 0.072 0.928 4 C -0.121 4.121 5 C 0.122 3.878 6 N -0.709 5.709 7 C 0.530 3.470 8 O -0.570 6.570 9 C -0.128 4.128 10 S -0.157 6.157 11 C -0.546 4.546 12 H 0.085 0.915 13 C 0.011 3.989 14 N -0.912 5.912 15 Si 1.000 3.000 16 H -0.261 1.261 17 H -0.280 1.280 18 H -0.261 1.261 19 N -0.706 5.706 20 C 0.599 3.401 21 O -0.582 6.582 22 C -0.104 4.104 23 C 0.035 3.965 24 N -0.454 5.454 25 C 0.062 3.938 26 C 0.191 3.809 27 N -0.498 5.498 28 H 0.042 0.958 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.113 0.887 32 H 0.100 0.900 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.420 0.580 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.271 0.729 39 H 0.412 0.588 40 H 0.199 0.801 41 H 0.090 0.910 42 H 0.118 0.882 43 H 0.102 0.898 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.740 -0.603 -22.099 32.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.038 3.962 3 H 0.090 0.910 4 C -0.159 4.159 5 C -0.002 4.002 6 N -0.364 5.364 7 C 0.316 3.684 8 O -0.449 6.449 9 C -0.279 4.279 10 S 0.070 5.930 11 C -0.694 4.694 12 H 0.103 0.897 13 C -0.193 4.193 14 N -0.549 5.549 15 Si 0.822 3.178 16 H -0.186 1.186 17 H -0.205 1.205 18 H -0.186 1.186 19 N -0.357 5.357 20 C 0.387 3.613 21 O -0.463 6.463 22 C -0.232 4.232 23 C -0.106 4.106 24 N -0.134 5.134 25 C -0.078 4.078 26 C -0.093 4.093 27 N -0.218 5.218 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.105 0.895 31 H 0.132 0.868 32 H 0.118 0.882 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.257 0.743 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.080 0.920 39 H 0.248 0.752 40 H 0.216 0.784 41 H 0.109 0.891 42 H 0.136 0.864 43 H 0.121 0.879 44 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -22.484 0.599 -22.866 32.074 hybrid contribution -0.213 -0.862 1.101 1.415 sum -22.696 -0.263 -21.765 31.447 Atomic orbital electron populations 1.22085 0.93220 1.03088 1.02701 1.20983 0.95293 0.96747 0.83147 0.90992 1.22040 0.91804 1.03586 0.98481 1.21330 0.95562 0.96407 0.86949 1.45686 1.06068 1.57175 1.27428 1.20161 0.82966 0.79305 0.85979 1.90699 1.56761 1.46826 1.50593 1.23364 1.00881 1.04444 0.99181 1.85639 0.99853 1.73385 1.34109 1.23180 0.96236 1.40119 1.09830 0.89733 1.26169 0.94671 0.96569 1.01926 1.70187 0.99924 1.44228 1.40528 0.84979 0.77336 0.78637 0.76879 1.18552 1.20466 1.18600 1.45911 1.66116 1.14671 1.08966 1.17199 0.76237 0.85169 0.82701 1.90751 1.53382 1.16472 1.85671 1.20608 1.14845 0.92679 0.95084 1.22838 1.01076 0.96358 0.90342 1.45630 1.46659 1.08681 1.12459 1.22540 1.03635 1.06907 0.74757 1.25964 1.03295 0.93836 0.86247 1.70535 1.16931 1.13861 1.20435 0.93886 0.91043 0.89477 0.86830 0.88203 0.93296 0.93363 0.74278 0.86969 0.86963 0.92019 0.75179 0.78395 0.89098 0.86401 0.87941 0.73546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.48 71.98 0.68 -1.52 16 2 C 0.14 2.58 2.57 44.99 0.12 2.70 16 3 H 0.07 1.63 7.58 -2.39 -0.02 1.61 16 4 C -0.12 -1.71 4.87 30.59 0.15 -1.56 16 5 C 0.12 2.92 5.56 86.38 0.48 3.40 16 6 N -0.71 -18.12 5.56 -463.05 -2.57 -20.69 16 7 C 0.53 20.31 7.85 87.66 0.69 20.99 16 8 O -0.57 -28.00 15.86 -3.03 -0.05 -28.05 16 9 C -0.13 -5.12 6.16 71.24 0.44 -4.68 16 10 S -0.16 -8.91 20.57 -56.49 -1.16 -10.07 16 11 C -0.55 -31.48 9.50 67.96 0.65 -30.83 16 12 H 0.08 4.48 7.80 -2.91 -0.02 4.46 16 13 C 0.01 0.65 5.49 84.86 0.47 1.11 16 14 N -0.91 -56.80 13.22 21.65 0.29 -56.51 16 15 Si 1.00 43.86 29.55 68.60 2.03 45.88 16 16 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 17 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 18 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 19 N -0.71 -15.24 4.53 -445.89 -2.02 -17.26 16 20 C 0.60 15.99 7.78 86.63 0.67 16.66 16 21 O -0.58 -18.49 16.54 -4.12 -0.07 -18.56 16 22 C -0.10 -2.47 6.98 40.50 0.28 -2.19 16 23 C 0.04 0.62 11.26 83.72 0.94 1.56 16 24 N -0.45 -5.09 3.13 -551.82 -1.72 -6.82 16 25 C 0.06 0.06 11.15 127.77 1.42 1.48 16 26 C 0.19 2.61 12.55 180.10 2.26 4.87 16 27 N -0.50 -10.89 11.01 -188.82 -2.08 -12.97 16 28 H 0.04 0.80 8.14 -2.39 -0.02 0.79 16 29 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.05 1.39 7.75 -2.39 -0.02 1.37 16 34 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.42 7.15 8.47 -92.71 -0.79 6.36 16 36 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 37 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 38 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 39 H 0.41 8.28 8.31 -92.71 -0.77 7.50 16 40 H 0.20 2.82 8.06 -2.91 -0.02 2.79 16 41 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 42 H 0.12 -0.44 8.14 -2.38 -0.02 -0.46 16 43 H 0.10 -0.13 8.14 -2.39 -0.02 -0.15 16 44 H 0.25 1.13 8.06 -2.91 -0.02 1.11 16 Total: -1.00 -92.47 396.40 1.36 -91.10 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: -0.53 Total: 21.94 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: 9.25 Total: 12.00 kcal Atomic # 7 Polarization: -106.14 SS G_CDS: -8.11 Total: -114.25 kcal Atomic # 8 Polarization: -46.49 SS G_CDS: -0.12 Total: -46.61 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: -8.91 SS G_CDS: -1.16 Total: -10.07 kcal Total: -92.47 1.36 -91.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075675823.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.440 kcal (2) G-P(sol) polarization free energy of solvation -92.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds