Wall clock time and date at job start Sat Apr 11 2020 05:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47209 * 2 1 4 4 C 1.53000 * 109.47212 * 119.99589 * 2 1 3 5 5 C 1.53004 * 109.46923 * 184.99818 * 4 2 1 6 6 N 1.46504 * 109.47034 * 180.02562 * 5 4 2 7 7 C 1.34768 * 120.00106 * 180.02562 * 6 5 4 8 8 O 1.21281 * 120.00030 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.00288 * 180.02562 * 7 6 5 10 10 S 1.80991 * 109.47463 * 179.97438 * 9 7 6 11 11 C 1.76199 * 100.00347 * 179.97438 * 10 9 7 12 12 H 1.08007 * 119.99864 * 0.02562 * 11 10 9 13 13 C 1.38799 * 120.00398 * 180.02562 * 11 10 9 14 14 N 1.31628 * 120.00158 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99857 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.47038 * 89.99892 * 15 13 11 17 17 H 1.48494 * 109.47025 * 210.00227 * 15 13 11 18 18 H 1.48502 * 109.47107 * 330.00380 * 15 13 11 19 19 N 1.46501 * 109.47014 * 239.99913 * 2 1 3 20 20 C 1.34769 * 119.99854 * 85.00041 * 19 2 1 21 21 O 1.21285 * 120.00559 * 359.97438 * 20 19 2 22 22 C 1.50699 * 120.00037 * 180.02562 * 20 19 2 23 23 C 1.50704 * 109.47511 * 179.97438 * 22 20 19 24 24 C 1.34664 * 126.58651 * 275.03761 * 23 22 20 25 25 N 1.34134 * 108.01786 * 179.74146 * 24 23 22 26 26 C 1.30496 * 109.25675 * 0.37372 * 25 24 23 27 27 N 1.35047 * 108.70161 * 359.62603 * 26 25 24 28 28 H 0.96997 * 126.40535 * 180.25138 * 27 26 25 29 29 H 1.09000 * 109.47105 * 299.99735 * 1 2 3 30 30 H 1.08999 * 109.47284 * 59.99936 * 1 2 3 31 31 H 1.08996 * 109.46783 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47188 * 305.00330 * 4 2 1 33 33 H 1.09004 * 109.46947 * 65.00353 * 4 2 1 34 34 H 1.08997 * 109.47350 * 299.99821 * 5 4 2 35 35 H 1.09004 * 109.46872 * 60.00489 * 5 4 2 36 36 H 0.97006 * 119.99936 * 0.02562 * 6 5 4 37 37 H 1.09001 * 109.46776 * 300.00039 * 9 7 6 38 38 H 1.08997 * 109.47230 * 59.99512 * 9 7 6 39 39 H 0.97000 * 120.00203 * 180.02562 * 14 13 11 40 40 H 0.96999 * 119.99913 * 264.99619 * 19 2 1 41 41 H 1.08992 * 109.47512 * 59.99585 * 22 20 19 42 42 H 1.09004 * 109.47075 * 299.99537 * 22 20 19 43 43 H 1.07998 * 125.99171 * 359.92955 * 24 23 22 44 44 H 1.08002 * 125.65353 * 179.89694 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.6132 1.3136 6 7 4.0534 -1.3042 2.5095 7 6 5.3741 -1.3397 2.7751 8 8 6.1585 -0.7999 2.0239 9 6 5.8767 -2.0510 4.0050 10 16 7.6805 -1.9232 4.0812 11 6 7.9876 -2.8130 5.5707 12 1 7.1640 -3.2364 6.1264 13 6 9.2880 -2.9698 6.0299 14 7 9.5175 -3.6350 7.1423 15 14 10.7126 -2.2368 5.0692 16 1 10.9741 -0.8557 5.5482 17 1 11.9258 -3.0688 5.2710 18 1 10.3701 -2.2031 3.6246 19 7 2.0183 -0.6906 -1.1962 20 6 2.1470 -0.0183 -2.3571 21 8 1.8582 1.1584 -2.4117 22 6 2.6488 -0.7288 -3.5877 23 6 2.6990 0.2393 -4.7415 24 6 1.6816 0.5639 -5.5618 25 7 2.1350 1.4606 -6.4505 26 6 3.3967 1.6979 -6.2169 27 7 3.7874 0.9584 -5.1565 28 1 4.6735 0.9403 -4.7624 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6054 -0.2616 2.1370 33 1 1.7517 -1.7715 1.2057 34 1 3.9995 -1.0728 0.4260 35 1 3.8532 0.4371 1.3573 36 1 3.4261 -1.7363 3.1102 37 1 5.4417 -1.5925 4.8931 38 1 5.5888 -3.1013 3.9604 39 1 10.4263 -3.7442 7.4635 40 1 2.2491 -1.6318 -1.1526 41 1 1.9760 -1.5506 -3.8325 42 1 3.6480 -1.1213 -3.3986 43 1 0.6760 0.1733 -5.5110 44 1 4.0236 2.3769 -6.7759 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075677996.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:00 Heat of formation + Delta-G solvation = -29.181047 kcal Electronic energy + Delta-G solvation = -25659.573237 eV Core-core repulsion = 21738.725026 eV Total energy + Delta-G solvation = -3920.848211 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.37028 -40.21404 -39.32707 -36.97537 -34.59939 -33.29572 -32.51470 -32.48204 -31.56531 -30.22593 -28.29721 -27.39697 -25.66597 -23.76530 -22.28393 -21.79177 -21.22926 -20.81008 -20.47900 -18.32442 -17.93933 -17.59353 -16.75785 -16.35926 -16.13323 -15.72115 -15.49528 -15.13726 -15.00916 -14.62817 -14.42428 -14.03679 -13.90666 -13.90236 -13.81864 -13.49180 -13.38831 -13.14058 -12.84255 -12.53250 -12.45693 -12.34890 -11.77924 -11.68861 -11.37792 -11.30795 -11.05232 -10.65827 -10.40500 -10.31171 -10.20798 -9.90765 -9.64830 -9.51026 -9.09697 -9.03307 -8.70911 -8.55852 -6.97446 -6.33451 -4.05717 1.63733 2.23700 2.64013 2.69426 2.83993 2.88855 2.99797 3.23335 3.29597 3.45808 3.58016 4.14208 4.28333 4.30435 4.38262 4.46565 4.53093 4.55822 4.62821 4.69997 4.90914 4.98923 5.01077 5.05596 5.09903 5.17295 5.27499 5.28878 5.29758 5.48574 5.62274 5.70744 5.73622 5.80795 5.84657 5.94508 6.07206 6.40020 6.41382 7.00345 7.07379 7.50607 7.74612 7.82242 7.89495 8.36805 8.39946 9.12608 10.75708 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015770 B = 0.001860 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.110494 B =15047.599982 C =16533.979175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.146 3.854 3 H 0.092 0.908 4 C -0.140 4.140 5 C 0.122 3.878 6 N -0.738 5.738 7 C 0.530 3.470 8 O -0.520 6.520 9 C -0.124 4.124 10 S -0.142 6.142 11 C -0.522 4.522 12 H 0.088 0.912 13 C 0.096 3.904 14 N -0.879 5.879 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.236 1.236 19 N -0.727 5.727 20 C 0.513 3.487 21 O -0.526 6.526 22 C -0.067 4.067 23 C -0.009 4.009 24 C -0.007 4.007 25 N -0.495 5.495 26 C 0.188 3.812 27 N -0.562 5.562 28 H 0.420 0.580 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.400 0.600 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.271 0.729 40 H 0.402 0.598 41 H 0.118 0.882 42 H 0.103 0.897 43 H 0.166 0.834 44 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.959 3.938 -20.491 28.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.110 0.890 4 C -0.178 4.178 5 C -0.003 4.003 6 N -0.393 5.393 7 C 0.316 3.684 8 O -0.394 6.394 9 C -0.275 4.275 10 S 0.084 5.916 11 C -0.670 4.670 12 H 0.106 0.894 13 C -0.113 4.113 14 N -0.516 5.516 15 Si 0.682 3.318 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.160 1.160 19 N -0.380 5.380 20 C 0.299 3.701 21 O -0.401 6.401 22 C -0.108 4.108 23 C -0.125 4.125 24 C -0.156 4.156 25 N -0.214 5.214 26 C -0.096 4.096 27 N -0.165 5.165 28 H 0.257 0.743 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.234 0.766 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.236 0.764 41 H 0.136 0.864 42 H 0.121 0.879 43 H 0.184 0.816 44 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -18.237 6.007 -22.299 29.426 hybrid contribution 0.572 -1.473 1.981 2.534 sum -17.665 4.534 -20.317 27.302 Atomic orbital electron populations 1.22161 0.94665 1.02325 1.02918 1.20882 0.94263 0.97670 0.83044 0.89010 1.22137 0.95273 1.02065 0.98363 1.21264 0.92767 0.97928 0.88293 1.45968 1.07741 1.58415 1.27168 1.20301 0.81632 0.79718 0.86758 1.90702 1.55025 1.44544 1.49160 1.23280 1.03100 1.03244 0.97888 1.84794 0.98059 1.73905 1.34854 1.22309 0.97304 1.39554 1.07819 0.89372 1.24715 0.98303 0.93878 0.94408 1.69934 1.21754 1.39372 1.20526 0.86734 0.82168 0.79926 0.83005 1.19192 1.19911 1.15975 1.46106 1.68025 1.14181 1.09669 1.20514 0.77815 0.87495 0.84297 1.90764 1.48826 1.15796 1.84685 1.20042 1.04502 0.96812 0.89464 1.20410 0.89012 1.02185 1.00882 1.22007 0.98928 0.99624 0.95039 1.70282 1.08641 1.16227 1.26279 1.24960 0.93580 0.99582 0.91436 1.43229 1.12461 1.34297 1.26518 0.74257 0.91389 0.91827 0.92269 0.89325 0.90392 0.91680 0.91576 0.76614 0.88470 0.88442 0.91906 0.76399 0.86362 0.87894 0.81639 0.77548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 9.48 37.16 0.35 -0.59 16 2 C 0.15 0.93 2.57 -67.93 -0.17 0.76 16 3 H 0.09 0.80 7.58 -51.93 -0.39 0.41 16 4 C -0.14 -0.76 4.87 -26.73 -0.13 -0.89 16 5 C 0.12 1.12 5.56 -4.04 -0.02 1.10 16 6 N -0.74 -8.14 5.56 -60.29 -0.33 -8.47 16 7 C 0.53 8.81 7.85 -10.99 -0.09 8.73 16 8 O -0.52 -10.76 15.86 5.56 0.09 -10.67 16 9 C -0.12 -2.29 6.16 36.01 0.22 -2.07 16 10 S -0.14 -3.52 18.55 -107.50 -1.99 -5.52 16 11 C -0.52 -14.77 10.04 30.94 0.31 -14.46 16 12 H 0.09 2.59 8.03 -52.48 -0.42 2.17 16 13 C 0.10 2.76 5.50 -17.43 -0.10 2.66 16 14 N -0.88 -26.15 13.97 55.49 0.78 -25.38 16 15 Si 0.86 21.45 27.74 -169.99 -4.72 16.73 16 16 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.24 -5.87 6.74 56.52 0.38 -5.49 16 19 N -0.73 -4.14 4.53 -53.81 -0.24 -4.38 16 20 C 0.51 4.08 7.79 -10.99 -0.09 3.99 16 21 O -0.53 -6.59 15.70 5.55 0.09 -6.50 16 22 C -0.07 -0.35 6.26 -29.03 -0.18 -0.54 16 23 C -0.01 -0.07 5.73 -81.60 -0.47 -0.54 16 24 C -0.01 -0.07 11.79 -17.81 -0.21 -0.28 16 25 N -0.50 -5.58 11.25 -14.66 -0.16 -5.74 16 26 C 0.19 1.53 13.04 -90.37 -1.18 0.35 16 27 N -0.56 -4.02 6.15 -10.30 -0.06 -4.09 16 28 H 0.42 1.89 8.96 -40.82 -0.37 1.52 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.64 7.75 -51.93 -0.40 0.23 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.40 3.18 8.47 -40.82 -0.35 2.84 16 37 H 0.10 1.66 8.14 -51.92 -0.42 1.24 16 38 H 0.10 1.64 8.14 -51.92 -0.42 1.22 16 39 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.40 1.32 8.60 -40.82 -0.35 0.97 16 41 H 0.12 0.33 8.14 -51.93 -0.42 -0.10 16 42 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.17 1.37 8.06 -52.49 -0.42 0.95 16 44 H 0.21 0.88 8.06 -52.49 -0.42 0.45 16 LS Contribution 392.14 15.07 5.91 5.91 Total: -1.00 -39.82 392.14 -8.91 -48.73 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -6.51 Total: 1.14 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -1.75 Total: -1.76 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: -0.03 Total: -48.06 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: 0.18 Total: -17.18 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.72 Total: 16.73 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -1.99 Total: -5.52 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -39.82 -8.91 -48.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075677996.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.553 kcal (2) G-P(sol) polarization free energy of solvation -39.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds