Wall clock time and date at job start Sat Apr 11 2020 05:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47209 * 2 1 4 4 C 1.53000 * 109.47212 * 119.99589 * 2 1 3 5 5 C 1.53004 * 109.46923 * 184.99818 * 4 2 1 6 6 N 1.46504 * 109.47034 * 180.02562 * 5 4 2 7 7 C 1.34768 * 120.00106 * 180.02562 * 6 5 4 8 8 O 1.21281 * 120.00030 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.00288 * 180.02562 * 7 6 5 10 10 S 1.80991 * 109.47463 * 179.97438 * 9 7 6 11 11 C 1.76199 * 100.00347 * 179.97438 * 10 9 7 12 12 H 1.08007 * 119.99864 * 0.02562 * 11 10 9 13 13 C 1.38799 * 120.00398 * 180.02562 * 11 10 9 14 14 N 1.31628 * 120.00158 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99857 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.47038 * 89.99892 * 15 13 11 17 17 H 1.48494 * 109.47025 * 210.00227 * 15 13 11 18 18 H 1.48502 * 109.47107 * 330.00380 * 15 13 11 19 19 N 1.46501 * 109.47014 * 239.99913 * 2 1 3 20 20 C 1.34769 * 119.99854 * 85.00041 * 19 2 1 21 21 O 1.21285 * 120.00559 * 359.97438 * 20 19 2 22 22 C 1.50699 * 120.00037 * 180.02562 * 20 19 2 23 23 C 1.50704 * 109.47511 * 179.97438 * 22 20 19 24 24 C 1.34664 * 126.58651 * 275.03761 * 23 22 20 25 25 N 1.34134 * 108.01786 * 179.74146 * 24 23 22 26 26 C 1.30496 * 109.25675 * 0.37372 * 25 24 23 27 27 N 1.35047 * 108.70161 * 359.62603 * 26 25 24 28 28 H 0.96997 * 126.40535 * 180.25138 * 27 26 25 29 29 H 1.09000 * 109.47105 * 299.99735 * 1 2 3 30 30 H 1.08999 * 109.47284 * 59.99936 * 1 2 3 31 31 H 1.08996 * 109.46783 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47188 * 305.00330 * 4 2 1 33 33 H 1.09004 * 109.46947 * 65.00353 * 4 2 1 34 34 H 1.08997 * 109.47350 * 299.99821 * 5 4 2 35 35 H 1.09004 * 109.46872 * 60.00489 * 5 4 2 36 36 H 0.97006 * 119.99936 * 0.02562 * 6 5 4 37 37 H 1.09001 * 109.46776 * 300.00039 * 9 7 6 38 38 H 1.08997 * 109.47230 * 59.99512 * 9 7 6 39 39 H 0.97000 * 120.00203 * 180.02562 * 14 13 11 40 40 H 0.96999 * 119.99913 * 264.99619 * 19 2 1 41 41 H 1.08992 * 109.47512 * 59.99585 * 22 20 19 42 42 H 1.09004 * 109.47075 * 299.99537 * 22 20 19 43 43 H 1.07998 * 125.99171 * 359.92955 * 24 23 22 44 44 H 1.08002 * 125.65353 * 179.89694 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.6132 1.3136 6 7 4.0534 -1.3042 2.5095 7 6 5.3741 -1.3397 2.7751 8 8 6.1585 -0.7999 2.0239 9 6 5.8767 -2.0510 4.0050 10 16 7.6805 -1.9232 4.0812 11 6 7.9876 -2.8130 5.5707 12 1 7.1640 -3.2364 6.1264 13 6 9.2880 -2.9698 6.0299 14 7 9.5175 -3.6350 7.1423 15 14 10.7126 -2.2368 5.0692 16 1 10.9741 -0.8557 5.5482 17 1 11.9258 -3.0688 5.2710 18 1 10.3701 -2.2031 3.6246 19 7 2.0183 -0.6906 -1.1962 20 6 2.1470 -0.0183 -2.3571 21 8 1.8582 1.1584 -2.4117 22 6 2.6488 -0.7288 -3.5877 23 6 2.6990 0.2393 -4.7415 24 6 1.6816 0.5639 -5.5618 25 7 2.1350 1.4606 -6.4505 26 6 3.3967 1.6979 -6.2169 27 7 3.7874 0.9584 -5.1565 28 1 4.6735 0.9403 -4.7624 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6054 -0.2616 2.1370 33 1 1.7517 -1.7715 1.2057 34 1 3.9995 -1.0728 0.4260 35 1 3.8532 0.4371 1.3573 36 1 3.4261 -1.7363 3.1102 37 1 5.4417 -1.5925 4.8931 38 1 5.5888 -3.1013 3.9604 39 1 10.4263 -3.7442 7.4635 40 1 2.2491 -1.6318 -1.1526 41 1 1.9760 -1.5506 -3.8325 42 1 3.6480 -1.1213 -3.3986 43 1 0.6760 0.1733 -5.5110 44 1 4.0236 2.3769 -6.7759 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075677996.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:59 Heat of formation + Delta-G solvation = -59.954095 kcal Electronic energy + Delta-G solvation = -25660.907657 eV Core-core repulsion = 21738.725026 eV Total energy + Delta-G solvation = -3922.182630 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.97422 -40.91369 -40.49451 -37.69443 -35.58699 -34.67081 -33.91258 -33.15375 -32.28036 -31.26254 -29.23100 -27.95587 -27.84130 -24.50211 -22.89316 -22.41663 -21.97494 -21.53893 -21.39319 -19.89271 -18.87952 -18.21621 -17.81808 -17.36935 -17.14921 -17.02160 -16.64586 -16.29366 -15.79518 -15.65583 -15.30658 -15.18172 -14.95144 -14.77390 -14.65927 -14.49262 -14.39304 -13.96854 -13.72744 -13.62303 -13.34561 -13.02538 -13.02172 -12.95974 -12.71528 -12.42136 -12.35440 -11.92281 -11.85285 -11.17430 -11.08335 -11.01832 -10.98013 -10.85977 -10.53139 -10.19557 -10.04043 -9.33145 -8.99485 -8.51579 -6.22262 0.99671 1.04521 1.31211 1.46464 1.56080 1.57058 1.65789 2.09877 2.22097 2.26062 2.26337 2.45688 2.72074 2.86769 3.63824 3.72801 3.78315 3.93447 4.00817 4.05496 4.13214 4.14652 4.25266 4.44182 4.48752 4.49735 4.54247 4.61476 4.63184 4.67004 4.83074 4.90907 5.04865 5.14767 5.25919 5.33044 5.41615 5.56196 5.70660 5.77835 6.11597 6.48492 6.51979 6.59747 6.93801 7.12261 7.21017 7.29921 8.60612 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015770 B = 0.001860 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.110494 B =15047.599982 C =16533.979175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.147 3.853 3 H 0.063 0.937 4 C -0.123 4.123 5 C 0.121 3.879 6 N -0.710 5.710 7 C 0.533 3.467 8 O -0.566 6.566 9 C -0.112 4.112 10 S -0.179 6.179 11 C -0.528 4.528 12 H 0.063 0.937 13 C 0.045 3.955 14 N -0.916 5.916 15 Si 0.914 3.086 16 H -0.264 1.264 17 H -0.260 1.260 18 H -0.236 1.236 19 N -0.714 5.714 20 C 0.511 3.489 21 O -0.579 6.579 22 C -0.061 4.061 23 C -0.009 4.009 24 C -0.040 4.040 25 N -0.540 5.540 26 C 0.185 3.815 27 N -0.558 5.558 28 H 0.432 0.568 29 H 0.076 0.924 30 H 0.039 0.961 31 H 0.077 0.923 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.064 0.936 35 H 0.045 0.955 36 H 0.419 0.581 37 H 0.113 0.887 38 H 0.117 0.883 39 H 0.277 0.723 40 H 0.417 0.583 41 H 0.148 0.852 42 H 0.127 0.873 43 H 0.170 0.830 44 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.692 3.006 -20.898 28.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.042 3.958 3 H 0.081 0.919 4 C -0.161 4.161 5 C -0.003 4.003 6 N -0.364 5.364 7 C 0.319 3.681 8 O -0.444 6.444 9 C -0.262 4.262 10 S 0.047 5.953 11 C -0.676 4.676 12 H 0.082 0.918 13 C -0.160 4.160 14 N -0.554 5.554 15 Si 0.736 3.264 16 H -0.189 1.189 17 H -0.184 1.184 18 H -0.160 1.160 19 N -0.367 5.367 20 C 0.298 3.702 21 O -0.458 6.458 22 C -0.102 4.102 23 C -0.126 4.126 24 C -0.188 4.188 25 N -0.260 5.260 26 C -0.099 4.099 27 N -0.162 5.162 28 H 0.272 0.728 29 H 0.095 0.905 30 H 0.058 0.942 31 H 0.096 0.904 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.257 0.743 37 H 0.131 0.869 38 H 0.135 0.865 39 H 0.086 0.914 40 H 0.254 0.746 41 H 0.166 0.834 42 H 0.145 0.855 43 H 0.187 0.813 44 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -19.014 5.015 -22.671 30.011 hybrid contribution 0.627 -1.177 2.119 2.504 sum -18.387 3.838 -20.552 27.842 Atomic orbital electron populations 1.22092 0.93846 1.03249 1.02215 1.20814 0.94785 0.96545 0.83679 0.91851 1.22043 0.92020 1.03801 0.98264 1.21390 0.95344 0.96390 0.87162 1.45703 1.05973 1.57030 1.27675 1.19968 0.83140 0.79313 0.85699 1.90694 1.56617 1.46717 1.50415 1.23279 0.98001 1.05125 0.99838 1.84732 1.04482 1.73332 1.32735 1.22463 0.96784 1.39383 1.08955 0.91844 1.25560 1.00829 0.94328 0.95303 1.70013 1.22716 1.40720 1.21977 0.85875 0.79562 0.79371 0.81604 1.18889 1.18413 1.15981 1.46024 1.66981 1.14817 1.08920 1.20957 0.76957 0.86912 0.85342 1.90750 1.51342 1.18175 1.85540 1.20164 1.06478 0.96441 0.87074 1.20794 0.88698 1.02091 1.00981 1.22275 0.99920 1.00554 0.96048 1.70223 1.10397 1.17609 1.27771 1.25598 0.93206 0.99521 0.91583 1.43279 1.12945 1.33731 1.26208 0.72798 0.90538 0.94166 0.90433 0.87915 0.87571 0.91788 0.93650 0.74307 0.86896 0.86510 0.91399 0.74563 0.83424 0.85479 0.81259 0.74473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.48 71.98 0.68 -0.80 16 2 C 0.15 1.59 2.57 44.99 0.12 1.70 16 3 H 0.06 1.09 7.58 -2.39 -0.02 1.07 16 4 C -0.12 -0.89 4.87 30.60 0.15 -0.74 16 5 C 0.12 1.91 5.56 86.38 0.48 2.39 16 6 N -0.71 -13.31 5.56 -463.05 -2.57 -15.88 16 7 C 0.53 16.57 7.85 87.66 0.69 17.26 16 8 O -0.57 -22.78 15.86 -3.03 -0.05 -22.83 16 9 C -0.11 -3.88 6.16 71.24 0.44 -3.44 16 10 S -0.18 -8.75 18.55 -56.49 -1.05 -9.80 16 11 C -0.53 -29.97 10.04 67.95 0.68 -29.29 16 12 H 0.06 3.78 8.03 -2.91 -0.02 3.76 16 13 C 0.05 2.61 5.50 84.86 0.47 3.07 16 14 N -0.92 -54.83 13.97 21.65 0.30 -54.53 16 15 Si 0.91 44.14 27.74 68.60 1.90 46.04 16 16 H -0.26 -12.52 7.11 99.48 0.71 -11.81 16 17 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 18 H -0.24 -11.32 6.74 99.48 0.67 -10.65 16 19 N -0.71 -6.53 4.53 -442.54 -2.00 -8.53 16 20 C 0.51 7.52 7.79 87.66 0.68 8.20 16 21 O -0.58 -14.71 15.70 -3.04 -0.05 -14.76 16 22 C -0.06 -0.52 6.26 29.10 0.18 -0.34 16 23 C -0.01 -0.14 5.73 40.95 0.23 0.10 16 24 C -0.04 -0.83 11.79 83.52 0.98 0.16 16 25 N -0.54 -12.45 11.25 -200.31 -2.25 -14.70 16 26 C 0.18 2.94 13.04 180.26 2.35 5.29 16 27 N -0.56 -7.53 6.15 -186.49 -1.15 -8.67 16 28 H 0.43 3.35 8.96 -92.71 -0.83 2.52 16 29 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.11 0.27 8.14 -2.38 -0.02 0.25 16 34 H 0.06 1.08 7.75 -2.39 -0.02 1.06 16 35 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.42 4.82 8.47 -92.70 -0.79 4.03 16 37 H 0.11 3.59 8.14 -2.39 -0.02 3.58 16 38 H 0.12 3.63 8.14 -2.40 -0.02 3.61 16 39 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 40 H 0.42 1.26 8.60 -92.71 -0.80 0.47 16 41 H 0.15 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.13 0.49 8.14 -2.38 -0.02 0.47 16 43 H 0.17 2.97 8.06 -2.91 -0.02 2.94 16 44 H 0.24 1.76 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -89.97 392.14 -0.18 -90.15 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -1.40 Total: 9.93 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: 8.14 Total: 3.58 kcal Atomic # 7 Polarization: -94.64 SS G_CDS: -7.68 Total: -102.32 kcal Atomic # 8 Polarization: -37.49 SS G_CDS: -0.10 Total: -37.59 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.90 Total: 46.04 kcal Atomic # 16 Polarization: -8.75 SS G_CDS: -1.05 Total: -9.80 kcal Total: -89.97 -0.18 -90.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075677996.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.198 kcal (2) G-P(sol) polarization free energy of solvation -89.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds