Wall clock time and date at job start Sat Apr 11 2020 05:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46987 * 2 1 4 4 C 1.52994 * 109.47007 * 120.00369 * 2 1 3 5 5 C 1.52996 * 109.47245 * 185.00002 * 4 2 1 6 6 N 1.46496 * 109.47669 * 180.02562 * 5 4 2 7 7 C 1.34776 * 120.00126 * 179.97438 * 6 5 4 8 8 O 1.21279 * 120.00428 * 359.97438 * 7 6 5 9 9 C 1.50706 * 119.99878 * 179.97438 * 7 6 5 10 10 S 1.81004 * 109.46973 * 180.02562 * 9 7 6 11 11 C 1.76203 * 99.99791 * 180.02562 * 10 9 7 12 12 H 1.08004 * 119.99832 * 0.02562 * 11 10 9 13 13 C 1.38795 * 119.99955 * 180.02562 * 11 10 9 14 14 N 1.31628 * 120.00169 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 120.00033 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47370 * 89.99759 * 15 13 11 17 17 H 1.48501 * 109.47170 * 210.00069 * 15 13 11 18 18 H 1.48510 * 109.46940 * 329.99873 * 15 13 11 19 19 N 1.46496 * 109.46722 * 240.00481 * 2 1 3 20 20 C 1.34777 * 120.00266 * 85.00322 * 19 2 1 21 21 O 1.21566 * 119.99717 * 0.26796 * 20 19 2 22 22 C 1.47716 * 119.99741 * 179.97438 * 20 19 2 23 23 C 1.41501 * 126.51241 * 179.70758 * 22 20 19 24 24 C 1.35369 * 105.50225 * 179.87604 * 23 22 20 25 25 N 1.35044 * 107.22584 * 0.38474 * 24 23 22 26 26 C 1.46493 * 124.88256 * 179.72592 * 25 24 23 27 27 N 1.28472 * 110.22925 * 359.74358 * 25 24 23 28 28 H 1.09002 * 109.46998 * 299.99874 * 1 2 3 29 29 H 1.09001 * 109.47129 * 59.99609 * 1 2 3 30 30 H 1.08994 * 109.47176 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47370 * 304.99713 * 4 2 1 32 32 H 1.08998 * 109.47506 * 64.99669 * 4 2 1 33 33 H 1.09001 * 109.47224 * 300.00147 * 5 4 2 34 34 H 1.09003 * 109.47589 * 59.99554 * 5 4 2 35 35 H 0.97000 * 119.99740 * 359.97438 * 6 5 4 36 36 H 1.09000 * 109.47042 * 299.99955 * 9 7 6 37 37 H 1.09002 * 109.46925 * 60.00486 * 9 7 6 38 38 H 0.96996 * 120.00671 * 180.02562 * 14 13 11 39 39 H 0.96999 * 119.99691 * 264.99990 * 19 2 1 40 40 H 1.07996 * 127.25313 * 0.02562 * 23 22 20 41 41 H 1.07991 * 126.38773 * 180.10736 * 24 23 22 42 42 H 1.09008 * 109.47282 * 269.99413 * 26 25 24 43 43 H 1.08993 * 109.47498 * 29.99858 * 26 25 24 44 44 H 1.09003 * 109.46840 * 150.00046 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6134 1.3137 6 7 4.0532 -1.3046 2.5094 7 6 5.3742 -1.3409 2.7745 8 8 6.1586 -0.8018 2.0229 9 6 5.8766 -2.0514 4.0049 10 16 7.6805 -1.9238 4.0810 11 6 7.9876 -2.8139 5.5704 12 1 7.1639 -3.2373 6.1260 13 6 9.2880 -2.9709 6.0294 14 7 9.5175 -3.6363 7.1417 15 14 10.7125 -2.2380 5.0688 16 1 10.9742 -0.8570 5.5479 17 1 11.9258 -3.0702 5.2704 18 1 10.3699 -2.2041 3.6241 19 7 2.0183 -0.6905 -1.1962 20 6 2.1470 -0.0181 -2.3571 21 8 1.8626 1.1626 -2.4104 22 6 2.6399 -0.7143 -3.5631 23 6 2.8217 -0.1480 -4.8470 24 6 3.2883 -1.1539 -5.6235 25 7 3.3692 -2.2549 -4.8456 26 6 3.8254 -3.5705 -5.3007 27 7 2.9884 -1.9825 -3.6493 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6055 -0.2618 2.1369 32 1 1.7516 -1.7715 1.2055 33 1 3.9995 -1.0728 0.4259 34 1 3.8533 0.4369 1.3573 35 1 3.4259 -1.7361 3.1104 36 1 5.4424 -1.5916 4.8927 37 1 5.5878 -3.1016 3.9613 38 1 10.4262 -3.7457 7.4628 39 1 2.2489 -1.6317 -1.1527 40 1 2.6311 0.8726 -5.1443 41 1 3.5434 -1.0893 -6.6708 42 1 2.9731 -4.1449 -5.6641 43 1 4.5492 -3.4456 -6.1060 44 1 4.2930 -4.1000 -4.4706 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075678365.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:07 Heat of formation + Delta-G solvation = -1.351971 kcal Electronic energy + Delta-G solvation = -25854.655331 eV Core-core repulsion = 21935.013880 eV Total energy + Delta-G solvation = -3919.641451 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.97429 -39.93111 -39.17990 -36.79149 -34.47853 -33.88484 -32.43648 -31.99773 -30.96303 -30.14061 -28.19675 -27.82872 -25.61432 -24.17429 -23.12188 -21.84863 -21.30041 -20.39492 -20.31733 -18.24228 -17.83300 -16.95957 -16.68589 -16.56439 -16.23110 -15.98002 -15.40263 -15.00311 -14.90815 -14.53698 -14.22407 -14.17628 -13.83972 -13.76395 -13.52086 -13.36581 -13.21376 -13.05777 -12.79279 -12.78617 -12.34663 -12.25285 -11.65817 -11.57227 -11.31582 -11.26340 -11.21742 -11.00342 -10.59531 -10.35694 -9.85380 -9.65724 -9.53143 -9.45793 -9.29523 -9.01101 -8.93765 -8.49095 -6.91200 -6.28624 -4.00203 1.26616 1.79422 2.06125 2.77325 2.89450 3.00173 3.19498 3.30714 3.34740 3.51181 3.65564 3.94543 4.33596 4.39679 4.42378 4.50874 4.55991 4.57273 4.74641 4.77573 4.86396 4.94261 5.10368 5.11263 5.12825 5.30218 5.30682 5.37575 5.39680 5.43607 5.61406 5.74539 5.80876 5.86866 5.93243 6.01690 6.02004 6.22729 6.34822 6.53583 7.18051 7.55320 7.62529 7.94467 7.97837 8.41831 8.51528 9.17656 10.80578 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012743 B = 0.002109 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.800718 B =13276.374195 C =14739.370982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.145 3.855 3 H 0.095 0.905 4 C -0.139 4.139 5 C 0.120 3.880 6 N -0.738 5.738 7 C 0.529 3.471 8 O -0.519 6.519 9 C -0.124 4.124 10 S -0.143 6.143 11 C -0.521 4.521 12 H 0.088 0.912 13 C 0.095 3.905 14 N -0.881 5.881 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.235 1.235 19 N -0.714 5.714 20 C 0.609 3.391 21 O -0.532 6.532 22 C -0.020 4.020 23 C -0.178 4.178 24 C -0.020 4.020 25 N -0.283 5.283 26 C 0.085 3.915 27 N -0.260 5.260 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.399 0.601 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.271 0.729 39 H 0.407 0.593 40 H 0.163 0.837 41 H 0.183 0.817 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.204 1.335 -24.673 31.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.113 0.887 4 C -0.178 4.178 5 C -0.004 4.004 6 N -0.392 5.392 7 C 0.315 3.685 8 O -0.393 6.393 9 C -0.274 4.274 10 S 0.084 5.916 11 C -0.668 4.668 12 H 0.106 0.894 13 C -0.113 4.113 14 N -0.517 5.517 15 Si 0.682 3.318 16 H -0.192 1.192 17 H -0.200 1.200 18 H -0.159 1.159 19 N -0.366 5.366 20 C 0.393 3.607 21 O -0.406 6.406 22 C -0.180 4.180 23 C -0.206 4.206 24 C -0.162 4.162 25 N -0.072 5.072 26 C -0.055 4.055 27 N -0.097 5.097 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.233 0.767 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.081 0.919 39 H 0.242 0.758 40 H 0.180 0.820 41 H 0.200 0.800 42 H 0.104 0.896 43 H 0.115 0.885 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -18.830 1.928 -25.242 31.551 hybrid contribution -0.368 -0.535 0.458 0.794 sum -19.198 1.393 -24.784 31.381 Atomic orbital electron populations 1.22171 0.94651 1.02351 1.02888 1.20932 0.94273 0.97801 0.82928 0.88683 1.22124 0.95340 1.02069 0.98228 1.21284 0.92768 0.98008 0.88338 1.45952 1.07686 1.58426 1.27149 1.20289 0.81681 0.79793 0.86759 1.90709 1.54993 1.44517 1.49095 1.23280 1.02989 1.03240 0.97926 1.84811 0.98198 1.73840 1.34786 1.22319 0.97280 1.39434 1.07811 0.89383 1.24715 0.98310 0.93903 0.94419 1.69935 1.21711 1.39492 1.20586 0.86733 0.82127 0.79902 0.83079 1.19194 1.19959 1.15932 1.45954 1.66972 1.14500 1.09163 1.16853 0.76858 0.85574 0.81388 1.90796 1.50541 1.14786 1.84525 1.21927 1.08953 0.90958 0.96142 1.21796 1.06147 1.00950 0.91733 1.22894 1.07215 0.86713 0.99376 1.45422 1.45512 1.10464 1.05788 1.22221 1.01318 0.79851 1.02139 1.73501 1.15731 1.17130 1.03314 0.91268 0.91817 0.92310 0.89244 0.90434 0.91515 0.91435 0.76692 0.88491 0.88486 0.91950 0.75782 0.81962 0.79986 0.89608 0.88460 0.88278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 9.48 37.16 0.35 -0.81 16 2 C 0.15 1.22 2.58 -67.93 -0.18 1.04 16 3 H 0.10 0.95 7.57 -51.93 -0.39 0.56 16 4 C -0.14 -1.00 4.87 -26.74 -0.13 -1.13 16 5 C 0.12 1.35 5.56 -4.05 -0.02 1.32 16 6 N -0.74 -9.22 5.56 -60.30 -0.33 -9.56 16 7 C 0.53 9.51 7.85 -10.98 -0.09 9.42 16 8 O -0.52 -11.52 15.86 5.56 0.09 -11.43 16 9 C -0.12 -2.40 6.16 36.01 0.22 -2.17 16 10 S -0.14 -3.65 18.55 -107.50 -1.99 -5.65 16 11 C -0.52 -15.07 10.04 30.94 0.31 -14.75 16 12 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 13 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 14 N -0.88 -26.64 13.97 55.49 0.78 -25.86 16 15 Si 0.86 21.94 27.74 -169.99 -4.71 17.22 16 16 H -0.27 -6.77 7.11 56.52 0.40 -6.36 16 17 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 18 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 19 N -0.71 -6.80 4.53 -54.79 -0.25 -7.05 16 20 C 0.61 7.35 7.79 -12.39 -0.10 7.25 16 21 O -0.53 -7.83 16.58 5.31 0.09 -7.74 16 22 C -0.02 -0.22 7.13 -82.76 -0.59 -0.81 16 23 C -0.18 -1.68 10.81 -39.36 -0.43 -2.11 16 24 C -0.02 -0.13 11.46 -17.16 -0.20 -0.33 16 25 N -0.28 -2.14 3.70 -68.13 -0.25 -2.39 16 26 C 0.08 0.26 11.31 59.84 0.68 0.94 16 27 N -0.26 -2.67 11.67 33.42 0.39 -2.28 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.84 7.75 -51.93 -0.40 0.44 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.40 3.69 8.47 -40.82 -0.35 3.34 16 36 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 37 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 38 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 39 H 0.41 3.47 8.33 -40.82 -0.34 3.13 16 40 H 0.16 1.37 8.06 -52.49 -0.42 0.94 16 41 H 0.18 0.51 8.06 -52.49 -0.42 0.08 16 42 H 0.09 0.14 8.14 -51.92 -0.42 -0.28 16 43 H 0.10 0.07 8.13 -51.93 -0.42 -0.36 16 44 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 LS Contribution 393.76 15.07 5.93 5.93 Total: -1.00 -38.99 393.76 -7.08 -46.07 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -6.55 Total: 2.19 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -0.26 Total: 0.56 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: 0.33 Total: -47.15 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: 0.18 Total: -19.17 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.71 Total: 17.22 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.65 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -38.99 -7.08 -46.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075678365.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.714 kcal (2) G-P(sol) polarization free energy of solvation -38.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds