Wall clock time and date at job start Sat Apr 11 2020 05:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.53001 * 109.46508 * 119.99286 * 2 1 3 5 5 C 1.53006 * 109.46654 * 184.99930 * 4 2 1 6 6 N 1.46505 * 109.46975 * 180.02562 * 5 4 2 7 7 C 1.34773 * 119.99859 * 180.02562 * 6 5 4 8 8 O 1.21628 * 120.00196 * 359.97438 * 7 6 5 9 9 C 1.47319 * 119.99903 * 179.97438 * 7 6 5 10 10 C 1.36427 * 126.23548 * 180.02562 * 9 7 6 11 11 N 1.35384 * 106.86995 * 179.97438 * 10 9 7 12 12 C 1.46500 * 126.13425 * 180.02562 * 11 10 9 13 13 C 1.35843 * 107.73005 * 359.97438 * 11 10 9 14 14 N 1.30168 * 109.00317 * 359.76052 * 13 11 10 15 15 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 16 16 C 1.34777 * 119.99525 * 84.99977 * 15 2 1 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 2 19 19 S 1.80997 * 109.47151 * 180.27780 * 18 16 15 20 20 C 1.76196 * 100.00314 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00626 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99674 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00584 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46793 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47282 * 119.99523 * 24 22 20 27 27 H 1.48500 * 109.47237 * 240.00020 * 24 22 20 28 28 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 29 29 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 30 30 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47404 * 304.99977 * 4 2 1 32 32 H 1.09001 * 109.47466 * 65.00446 * 4 2 1 33 33 H 1.09000 * 109.47254 * 300.00139 * 5 4 2 34 34 H 1.09001 * 109.46763 * 60.00085 * 5 4 2 35 35 H 0.97001 * 119.99746 * 359.97438 * 6 5 4 36 36 H 1.07997 * 126.56317 * 359.94040 * 10 9 7 37 37 H 1.08998 * 109.47013 * 89.99531 * 12 11 10 38 38 H 1.08994 * 109.47256 * 209.99926 * 12 11 10 39 39 H 1.09006 * 109.46940 * 330.00141 * 12 11 10 40 40 H 1.08004 * 125.49773 * 180.02562 * 13 11 10 41 41 H 0.97000 * 120.00580 * 265.00723 * 15 2 1 42 42 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 43 43 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 44 44 H 0.97003 * 120.00297 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5648 -0.6132 1.3138 6 7 4.0531 -1.3042 2.5098 7 6 5.3739 -1.3396 2.7755 8 8 6.1606 -0.7983 2.0221 9 6 5.8650 -2.0340 3.9784 10 6 7.1672 -2.1476 4.3689 11 7 7.1712 -2.8578 5.5215 12 6 8.3529 -3.2253 6.3056 13 6 5.8830 -3.1676 5.8211 14 7 5.1036 -2.6718 4.9040 15 7 2.0185 -0.6908 -1.1960 16 6 2.1472 -0.0185 -2.3570 17 8 1.8591 1.1584 -2.4116 18 6 2.6554 -0.7275 -3.5859 19 16 2.7226 0.4369 -4.9699 20 6 3.3326 -0.6266 -6.2353 21 1 3.5410 -1.6633 -6.0155 22 6 3.5443 -0.1325 -7.5150 23 7 3.2888 1.1306 -7.7834 24 14 4.1903 -1.2601 -8.8567 25 1 4.3951 -2.6225 -8.3022 26 1 3.2076 -1.3203 -9.9685 27 1 5.4823 -0.7341 -9.3659 28 1 -0.3633 0.5140 0.8898 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6053 -0.2615 2.1370 32 1 1.7516 -1.7714 1.2059 33 1 3.9995 -1.0728 0.4262 34 1 3.8531 0.4371 1.3574 35 1 3.4257 -1.7356 3.1109 36 1 8.0297 -1.7480 3.8564 37 1 8.5604 -2.4447 7.0375 38 1 8.1679 -4.1674 6.8217 39 1 9.2096 -3.3372 5.6410 40 1 5.5575 -3.7304 6.6835 41 1 2.2491 -1.6319 -1.1524 42 1 3.6539 -1.1197 -3.3923 43 1 1.9842 -1.5494 -3.8349 44 1 3.4371 1.4761 -8.6776 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076154580.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:22 Heat of formation + Delta-G solvation = -21.598905 kcal Electronic energy + Delta-G solvation = -25576.470778 eV Core-core repulsion = 21655.951354 eV Total energy + Delta-G solvation = -3920.519424 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.60355 -39.65561 -39.14797 -36.50566 -34.74358 -34.38175 -32.37778 -31.74249 -30.35916 -29.36551 -28.41173 -27.63911 -25.43456 -24.43313 -22.63397 -21.62171 -21.46528 -20.32600 -20.18321 -18.35711 -17.75940 -16.53893 -16.49079 -16.37546 -16.21756 -15.80411 -15.31152 -14.89167 -14.75800 -14.68179 -14.26617 -14.22222 -13.89518 -13.78177 -13.51937 -13.39368 -13.23242 -13.13480 -12.80117 -12.58598 -12.05557 -11.86245 -11.63284 -11.44129 -11.03544 -10.99469 -10.96021 -10.77982 -10.70716 -10.27605 -10.21377 -9.75105 -9.30510 -9.28580 -9.02907 -8.99590 -8.81885 -8.16775 -6.43608 -6.16758 -3.86448 1.22088 2.00696 2.11463 3.05570 3.10390 3.18123 3.25389 3.32139 3.33019 3.37521 3.78997 3.98437 4.06738 4.25376 4.29899 4.44192 4.58808 4.67570 4.72216 4.82942 4.86957 5.05566 5.18417 5.23554 5.33698 5.40776 5.45459 5.52837 5.64016 5.71941 5.75446 5.85908 5.96847 5.98596 6.09170 6.21666 6.24656 6.28846 6.49565 6.74181 7.19729 7.49833 7.65085 7.79192 8.11102 8.40672 8.70188 9.28755 10.90751 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013464 B = 0.001900 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.051471 B =14730.129922 C =16322.508576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 H 0.091 0.909 4 C -0.137 4.137 5 C 0.117 3.883 6 N -0.717 5.717 7 C 0.601 3.399 8 O -0.540 6.540 9 C -0.063 4.063 10 C 0.035 3.965 11 N -0.461 5.461 12 C 0.069 3.931 13 C 0.184 3.816 14 N -0.465 5.465 15 N -0.735 5.735 16 C 0.534 3.466 17 O -0.517 6.517 18 C -0.154 4.154 19 S -0.060 6.060 20 C -0.534 4.534 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.407 0.593 36 H 0.189 0.811 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.212 0.788 41 H 0.397 0.603 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.856 -11.924 33.273 35.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.109 0.891 4 C -0.175 4.175 5 C -0.006 4.006 6 N -0.368 5.368 7 C 0.387 3.613 8 O -0.417 6.417 9 C -0.192 4.192 10 C -0.104 4.104 11 N -0.143 5.143 12 C -0.073 4.073 13 C -0.099 4.099 14 N -0.184 5.184 15 N -0.390 5.390 16 C 0.320 3.680 17 O -0.391 6.391 18 C -0.305 4.305 19 S 0.166 5.834 20 C -0.682 4.682 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.242 0.758 36 H 0.206 0.794 37 H 0.100 0.900 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.229 0.771 41 H 0.231 0.769 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.168 -9.495 32.534 34.146 hybrid contribution 1.468 -2.802 -0.315 3.179 sum 5.636 -12.296 32.219 34.943 Atomic orbital electron populations 1.22170 0.95060 1.02081 1.02773 1.20781 0.94118 0.97747 0.83231 0.89055 1.22103 0.94585 1.02109 0.98732 1.21435 0.93617 0.98014 0.87547 1.45764 1.07311 1.56715 1.27035 1.16892 0.82375 0.78961 0.83113 1.90850 1.55685 1.46270 1.48870 1.20587 0.90724 1.08732 0.99157 1.22665 1.00028 0.98867 0.88887 1.45360 1.09056 1.40432 1.19480 1.22175 0.86149 1.02509 0.96465 1.25196 0.78730 1.04293 1.01714 1.70582 1.32653 1.12302 1.02848 1.46127 1.69427 1.13893 1.09550 1.20282 0.76756 0.87206 0.83756 1.90696 1.48356 1.15699 1.84369 1.23539 1.03661 1.04831 0.98447 1.85377 1.86004 1.12984 0.99011 1.22919 1.50595 0.98197 0.96514 0.90902 1.24991 0.95166 0.95530 0.97947 1.70033 1.45668 1.13184 1.21436 0.86121 0.78515 0.80161 0.80720 1.19634 1.20604 1.20588 0.91878 0.91482 0.92545 0.89696 0.90581 0.90812 0.91009 0.75768 0.79373 0.89966 0.88919 0.89121 0.77150 0.76906 0.89220 0.89303 0.92287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 9.48 37.16 0.35 -1.38 16 2 C 0.15 1.68 2.57 -67.93 -0.17 1.51 16 3 H 0.09 1.24 7.58 -51.93 -0.39 0.85 16 4 C -0.14 -1.13 4.87 -26.73 -0.13 -1.26 16 5 C 0.12 1.26 5.56 -4.04 -0.02 1.24 16 6 N -0.72 -7.51 5.55 -61.41 -0.34 -7.85 16 7 C 0.60 7.71 7.81 -12.57 -0.10 7.62 16 8 O -0.54 -8.81 16.88 5.25 0.09 -8.73 16 9 C -0.06 -0.67 6.98 -83.09 -0.58 -1.25 16 10 C 0.03 0.28 11.26 -16.64 -0.19 0.09 16 11 N -0.46 -2.40 3.13 -125.78 -0.39 -2.79 16 12 C 0.07 0.05 11.15 59.85 0.67 0.71 16 13 C 0.18 1.09 12.55 -89.91 -1.13 -0.04 16 14 N -0.46 -4.34 11.01 -11.03 -0.12 -4.46 16 15 N -0.74 -9.88 4.53 -53.80 -0.24 -10.12 16 16 C 0.53 10.13 7.81 -10.98 -0.09 10.04 16 17 O -0.52 -11.86 15.52 5.55 0.09 -11.77 16 18 C -0.15 -3.20 6.16 36.01 0.22 -2.98 16 19 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 20 C -0.53 -15.56 9.50 30.94 0.29 -15.27 16 21 H 0.07 2.02 7.80 -52.48 -0.41 1.61 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.64 13.22 55.49 0.73 -25.91 16 24 Si 0.92 21.88 29.55 -169.99 -5.02 16.85 16 25 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.91 7.75 -51.93 -0.40 0.51 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.41 3.51 8.19 -40.82 -0.33 3.18 16 36 H 0.19 1.28 8.06 -52.49 -0.42 0.86 16 37 H 0.08 -0.02 8.14 -51.93 -0.42 -0.44 16 38 H 0.09 -0.11 8.14 -51.93 -0.42 -0.53 16 39 H 0.09 0.00 8.14 -51.93 -0.42 -0.42 16 40 H 0.21 0.36 8.06 -52.48 -0.42 -0.07 16 41 H 0.40 4.29 8.60 -40.82 -0.35 3.94 16 42 H 0.09 1.75 8.14 -51.91 -0.42 1.33 16 43 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 44 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 396.40 15.07 5.97 5.97 Total: -1.00 -40.10 396.40 -8.94 -49.04 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -6.52 Total: 2.61 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -0.97 Total: 1.04 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: -0.37 Total: -51.14 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: 0.17 Total: -20.50 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -40.10 -8.94 -49.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076154580.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.439 kcal (2) G-P(sol) polarization free energy of solvation -40.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds