Wall clock time and date at job start Sat Apr 11 2020 05:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.53001 * 109.46508 * 119.99286 * 2 1 3 5 5 C 1.53006 * 109.46654 * 184.99930 * 4 2 1 6 6 N 1.46505 * 109.46975 * 180.02562 * 5 4 2 7 7 C 1.34773 * 119.99859 * 180.02562 * 6 5 4 8 8 O 1.21628 * 120.00196 * 359.97438 * 7 6 5 9 9 C 1.47319 * 119.99903 * 179.97438 * 7 6 5 10 10 C 1.36427 * 126.23548 * 180.02562 * 9 7 6 11 11 N 1.35384 * 106.86995 * 179.97438 * 10 9 7 12 12 C 1.46500 * 126.13425 * 180.02562 * 11 10 9 13 13 C 1.35843 * 107.73005 * 359.97438 * 11 10 9 14 14 N 1.30168 * 109.00317 * 359.76052 * 13 11 10 15 15 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 16 16 C 1.34777 * 119.99525 * 84.99977 * 15 2 1 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 2 19 19 S 1.80997 * 109.47151 * 180.27780 * 18 16 15 20 20 C 1.76196 * 100.00314 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00626 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99674 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00584 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46793 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47282 * 119.99523 * 24 22 20 27 27 H 1.48500 * 109.47237 * 240.00020 * 24 22 20 28 28 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 29 29 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 30 30 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47404 * 304.99977 * 4 2 1 32 32 H 1.09001 * 109.47466 * 65.00446 * 4 2 1 33 33 H 1.09000 * 109.47254 * 300.00139 * 5 4 2 34 34 H 1.09001 * 109.46763 * 60.00085 * 5 4 2 35 35 H 0.97001 * 119.99746 * 359.97438 * 6 5 4 36 36 H 1.07997 * 126.56317 * 359.94040 * 10 9 7 37 37 H 1.08998 * 109.47013 * 89.99531 * 12 11 10 38 38 H 1.08994 * 109.47256 * 209.99926 * 12 11 10 39 39 H 1.09006 * 109.46940 * 330.00141 * 12 11 10 40 40 H 1.08004 * 125.49773 * 180.02562 * 13 11 10 41 41 H 0.97000 * 120.00580 * 265.00723 * 15 2 1 42 42 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 43 43 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 44 44 H 0.97003 * 120.00297 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5648 -0.6132 1.3138 6 7 4.0531 -1.3042 2.5098 7 6 5.3739 -1.3396 2.7755 8 8 6.1606 -0.7983 2.0221 9 6 5.8650 -2.0340 3.9784 10 6 7.1672 -2.1476 4.3689 11 7 7.1712 -2.8578 5.5215 12 6 8.3529 -3.2253 6.3056 13 6 5.8830 -3.1676 5.8211 14 7 5.1036 -2.6718 4.9040 15 7 2.0185 -0.6908 -1.1960 16 6 2.1472 -0.0185 -2.3570 17 8 1.8591 1.1584 -2.4116 18 6 2.6554 -0.7275 -3.5859 19 16 2.7226 0.4369 -4.9699 20 6 3.3326 -0.6266 -6.2353 21 1 3.5410 -1.6633 -6.0155 22 6 3.5443 -0.1325 -7.5150 23 7 3.2888 1.1306 -7.7834 24 14 4.1903 -1.2601 -8.8567 25 1 4.3951 -2.6225 -8.3022 26 1 3.2076 -1.3203 -9.9685 27 1 5.4823 -0.7341 -9.3659 28 1 -0.3633 0.5140 0.8898 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6053 -0.2615 2.1370 32 1 1.7516 -1.7714 1.2059 33 1 3.9995 -1.0728 0.4262 34 1 3.8531 0.4371 1.3574 35 1 3.4257 -1.7356 3.1109 36 1 8.0297 -1.7480 3.8564 37 1 8.5604 -2.4447 7.0375 38 1 8.1679 -4.1674 6.8217 39 1 9.2096 -3.3372 5.6410 40 1 5.5575 -3.7304 6.6835 41 1 2.2491 -1.6319 -1.1524 42 1 3.6539 -1.1197 -3.3923 43 1 1.9842 -1.5494 -3.8349 44 1 3.4371 1.4761 -8.6776 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076154580.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:21 Heat of formation + Delta-G solvation = -51.660887 kcal Electronic energy + Delta-G solvation = -25577.774363 eV Core-core repulsion = 21655.951354 eV Total energy + Delta-G solvation = -3921.823010 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.12056 -40.86857 -40.29070 -37.65234 -35.63665 -34.98731 -34.58867 -33.01384 -31.06467 -30.35177 -29.68283 -27.96316 -27.66376 -25.21169 -23.43842 -22.53982 -22.06863 -21.61321 -21.05326 -19.83847 -18.92309 -17.93449 -17.47536 -17.00822 -16.92143 -16.88922 -16.83321 -16.35622 -16.26668 -15.82252 -15.24302 -14.95072 -14.83176 -14.75446 -14.65301 -14.45928 -14.35155 -13.95380 -13.62399 -13.44299 -13.30335 -13.16391 -13.01837 -12.91483 -12.59239 -12.44411 -12.40513 -11.92168 -11.70672 -11.44941 -11.16169 -11.12063 -10.89502 -10.72205 -10.27502 -10.23156 -10.07080 -9.61497 -8.66521 -8.35100 -6.12929 0.54271 1.27088 1.40747 1.44504 1.46772 1.58345 1.64700 1.73158 2.25983 2.27055 2.33044 2.51095 2.98832 3.32431 3.41319 3.73574 3.81682 3.93066 4.00450 4.02760 4.09091 4.22068 4.29546 4.43993 4.44872 4.47988 4.50880 4.53348 4.64112 4.77268 4.83271 4.89374 5.03440 5.05660 5.14556 5.34356 5.40093 5.40913 5.41562 5.57387 6.10738 6.19684 6.47262 6.53720 6.85456 7.06088 7.22628 7.28485 8.74491 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013464 B = 0.001900 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.051471 B =14730.129922 C =16322.508576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.143 3.857 3 H 0.066 0.934 4 C -0.117 4.117 5 C 0.119 3.881 6 N -0.704 5.704 7 C 0.593 3.407 8 O -0.589 6.589 9 C -0.099 4.099 10 C 0.034 3.966 11 N -0.454 5.454 12 C 0.062 3.938 13 C 0.196 3.804 14 N -0.494 5.494 15 N -0.710 5.710 16 C 0.535 3.465 17 O -0.564 6.564 18 C -0.131 4.131 19 S -0.151 6.151 20 C -0.547 4.547 21 H 0.082 0.918 22 C 0.012 3.988 23 N -0.911 5.911 24 Si 1.000 3.000 25 H -0.257 1.257 26 H -0.272 1.272 27 H -0.274 1.274 28 H 0.087 0.913 29 H 0.032 0.968 30 H 0.076 0.924 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.056 0.944 34 H 0.050 0.950 35 H 0.418 0.582 36 H 0.194 0.806 37 H 0.094 0.906 38 H 0.119 0.881 39 H 0.097 0.903 40 H 0.254 0.746 41 H 0.414 0.586 42 H 0.104 0.896 43 H 0.110 0.890 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.063 -15.337 35.937 39.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.039 3.961 3 H 0.084 0.916 4 C -0.155 4.155 5 C -0.005 4.005 6 N -0.355 5.355 7 C 0.381 3.619 8 O -0.470 6.470 9 C -0.227 4.227 10 C -0.108 4.108 11 N -0.134 5.134 12 C -0.079 4.079 13 C -0.088 4.088 14 N -0.213 5.213 15 N -0.364 5.364 16 C 0.321 3.679 17 O -0.442 6.442 18 C -0.282 4.282 19 S 0.076 5.924 20 C -0.694 4.694 21 H 0.100 0.900 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.821 3.179 25 H -0.181 1.181 26 H -0.197 1.197 27 H -0.199 1.199 28 H 0.106 0.894 29 H 0.051 0.949 30 H 0.095 0.905 31 H 0.129 0.871 32 H 0.121 0.879 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.256 0.744 36 H 0.211 0.789 37 H 0.113 0.887 38 H 0.137 0.863 39 H 0.115 0.885 40 H 0.270 0.730 41 H 0.251 0.749 42 H 0.122 0.878 43 H 0.128 0.872 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.356 -12.973 35.280 37.841 hybrid contribution 1.428 -1.794 -0.911 2.467 sum 5.785 -14.767 34.369 37.851 Atomic orbital electron populations 1.22113 0.93752 1.03247 1.02347 1.20964 0.95046 0.96794 0.83334 0.91616 1.21988 0.92297 1.03505 0.97742 1.21353 0.95399 0.96628 0.87144 1.45648 1.06970 1.56043 1.26812 1.17346 0.82602 0.78478 0.83485 1.90807 1.56856 1.48580 1.50722 1.20420 0.92012 1.10790 0.99482 1.22806 0.99412 0.98729 0.89842 1.45622 1.10298 1.38979 1.18537 1.22540 0.84695 1.04187 0.96436 1.26045 0.78566 1.02686 1.01540 1.70508 1.33720 1.13506 1.03614 1.45915 1.67511 1.14521 1.08474 1.20004 0.76671 0.86576 0.84671 1.90684 1.50772 1.17624 1.85147 1.23390 1.05255 1.03282 0.96314 1.85544 1.86405 1.17422 1.02987 1.23244 1.50742 0.98446 0.97016 0.90035 1.26144 0.95106 0.97244 1.00733 1.70194 1.46834 1.15446 1.22286 0.84892 0.77851 0.78159 0.76952 1.18112 1.19720 1.19937 0.89383 0.94885 0.90510 0.87091 0.87905 0.92577 0.93151 0.74437 0.78929 0.88712 0.86273 0.88469 0.73008 0.74906 0.87758 0.87173 0.91980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.07 9.48 71.98 0.68 -2.39 16 2 C 0.14 3.14 2.57 45.00 0.12 3.26 16 3 H 0.07 1.83 7.58 -2.39 -0.02 1.81 16 4 C -0.12 -1.67 4.87 30.60 0.15 -1.52 16 5 C 0.12 2.54 5.56 86.38 0.48 3.02 16 6 N -0.70 -14.53 5.55 -466.45 -2.59 -17.12 16 7 C 0.59 15.71 7.81 86.63 0.68 16.39 16 8 O -0.59 -20.36 16.88 -4.12 -0.07 -20.43 16 9 C -0.10 -2.10 6.98 40.50 0.28 -1.82 16 10 C 0.03 0.53 11.26 83.72 0.94 1.47 16 11 N -0.45 -3.66 3.13 -551.84 -1.73 -5.39 16 12 C 0.06 -0.11 11.15 127.77 1.42 1.32 16 13 C 0.20 1.76 12.55 180.10 2.26 4.02 16 14 N -0.49 -8.50 11.01 -188.82 -2.08 -10.58 16 15 N -0.71 -18.48 4.53 -442.52 -2.00 -20.48 16 16 C 0.54 20.60 7.81 87.66 0.68 21.29 16 17 O -0.56 -27.02 15.52 -3.04 -0.05 -27.07 16 18 C -0.13 -5.48 6.16 71.24 0.44 -5.04 16 19 S -0.15 -8.69 20.57 -56.49 -1.16 -9.85 16 20 C -0.55 -32.27 9.50 67.95 0.65 -31.63 16 21 H 0.08 4.49 7.80 -2.91 -0.02 4.47 16 22 C 0.01 0.72 5.49 84.86 0.47 1.19 16 23 N -0.91 -57.34 13.22 21.65 0.29 -57.05 16 24 Si 1.00 44.90 29.55 68.60 2.03 46.93 16 25 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 26 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 27 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 28 H 0.09 1.30 8.14 -2.39 -0.02 1.29 16 29 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.19 16 31 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.06 1.40 7.75 -2.39 -0.02 1.38 16 34 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.42 6.65 8.19 -92.71 -0.76 5.89 16 36 H 0.19 2.66 8.06 -2.91 -0.02 2.64 16 37 H 0.09 -0.34 8.14 -2.39 -0.02 -0.36 16 38 H 0.12 -0.79 8.14 -2.39 -0.02 -0.81 16 39 H 0.10 -0.25 8.14 -2.38 -0.02 -0.27 16 40 H 0.25 -0.26 8.06 -2.91 -0.02 -0.28 16 41 H 0.41 8.09 8.60 -92.71 -0.80 7.30 16 42 H 0.10 4.04 8.14 -2.39 -0.02 4.02 16 43 H 0.11 4.11 8.14 -2.40 -0.02 4.09 16 44 H 0.27 15.77 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -93.66 396.40 1.36 -92.30 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -0.53 Total: 19.18 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: 9.25 Total: 9.56 kcal Atomic # 7 Polarization: -102.51 SS G_CDS: -8.11 Total: -110.62 kcal Atomic # 8 Polarization: -47.38 SS G_CDS: -0.12 Total: -47.50 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 16 Polarization: -8.69 SS G_CDS: -1.16 Total: -9.85 kcal Total: -93.66 1.36 -92.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076154580.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.639 kcal (2) G-P(sol) polarization free energy of solvation -93.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds