Wall clock time and date at job start Sat Apr 11 2020 05:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 109.47246 * 2 1 4 4 C 1.53000 * 109.47109 * 119.99985 * 2 1 3 5 5 C 1.52998 * 109.47100 * 185.00056 * 4 2 1 6 6 N 1.46509 * 109.47117 * 179.97438 * 5 4 2 7 7 C 1.34776 * 119.99934 * 180.02562 * 6 5 4 8 8 O 1.21679 * 120.00074 * 354.54150 * 7 6 5 9 9 C 1.46759 * 119.99791 * 174.54876 * 7 6 5 10 10 C 1.36664 * 126.84732 * 4.90428 * 9 7 6 11 11 N 1.33321 * 107.78724 * 179.97438 * 10 9 7 12 12 C 1.30858 * 109.68576 * 359.97438 * 11 10 9 13 13 N 1.34494 * 109.16121 * 359.76649 * 12 11 10 14 14 C 1.46500 * 126.47029 * 180.25011 * 13 12 11 15 15 N 1.46500 * 109.47437 * 240.00024 * 2 1 3 16 16 C 1.34770 * 120.00292 * 84.99575 * 15 2 1 17 17 O 1.21285 * 119.99984 * 0.02562 * 16 15 2 18 18 C 1.50705 * 120.00373 * 180.02562 * 16 15 2 19 19 S 1.81000 * 109.47393 * 180.02562 * 18 16 15 20 20 C 1.76195 * 99.99831 * 179.97438 * 19 18 16 21 21 H 1.07996 * 120.00666 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99681 * 179.97438 * 20 19 18 23 23 N 1.31631 * 119.99920 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 120.00041 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47043 * 90.00198 * 24 22 20 26 26 H 1.48503 * 109.47018 * 209.99724 * 24 22 20 27 27 H 1.48494 * 109.47149 * 330.00326 * 24 22 20 28 28 H 1.08997 * 109.47246 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47469 * 300.00216 * 1 2 3 30 30 H 1.09000 * 109.47419 * 60.00142 * 1 2 3 31 31 H 1.09002 * 109.47004 * 304.99866 * 4 2 1 32 32 H 1.08996 * 109.46990 * 64.99755 * 4 2 1 33 33 H 1.09003 * 109.47560 * 299.99842 * 5 4 2 34 34 H 1.08996 * 109.47445 * 59.99977 * 5 4 2 35 35 H 0.96994 * 119.99671 * 359.97438 * 6 5 4 36 36 H 1.07998 * 126.10257 * 359.96812 * 10 9 7 37 37 H 1.07996 * 125.41461 * 179.97438 * 12 11 10 38 38 H 1.09001 * 109.47356 * 272.01281 * 14 13 12 39 39 H 1.08998 * 109.47644 * 32.01783 * 14 13 12 40 40 H 1.09002 * 109.46842 * 152.01661 * 14 13 12 41 41 H 0.97002 * 119.99972 * 265.00110 * 15 2 1 42 42 H 1.09010 * 109.46805 * 300.00413 * 18 16 15 43 43 H 1.09000 * 109.47156 * 59.99969 * 18 16 15 44 44 H 0.96993 * 120.00156 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5647 -0.6133 1.3137 6 7 4.0530 -1.3034 2.5103 7 6 5.3739 -1.3386 2.7760 8 8 6.1682 -0.8848 1.9737 9 6 5.8540 -1.9245 4.0330 10 6 5.1010 -2.5535 4.9843 11 7 5.9199 -2.9368 5.9641 12 6 7.1465 -2.5821 5.6775 13 7 7.1583 -1.9558 4.4874 14 6 8.3321 -1.4074 3.8035 15 7 2.0183 -0.6906 -1.1961 16 6 2.1470 -0.0183 -2.3571 17 8 1.8589 1.1585 -2.4115 18 6 2.6489 -0.7289 -3.5877 19 16 2.7106 0.4343 -4.9731 20 6 3.3137 -0.6310 -6.2403 21 1 3.5223 -1.6675 -6.0206 22 6 3.5198 -0.1381 -7.5214 23 7 3.9700 -0.9340 -8.4683 24 14 3.1571 1.6544 -7.9022 25 1 4.3757 2.4680 -7.6613 26 1 2.7474 1.7854 -9.3236 27 1 2.0598 2.1346 -7.0244 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6053 -0.2617 2.1370 32 1 1.7515 -1.7714 1.2056 33 1 3.9994 -1.0728 0.4260 34 1 3.8531 0.4369 1.3573 35 1 3.4256 -1.7343 3.1115 36 1 4.0333 -2.7117 4.9488 37 1 8.0121 -2.7663 6.2966 38 1 8.4988 -0.3820 4.1335 39 1 9.2070 -2.0124 4.0415 40 1 8.1639 -1.4197 2.7266 41 1 2.2490 -1.6318 -1.1526 42 1 3.6481 -1.1214 -3.3985 43 1 1.9760 -1.5507 -3.8326 44 1 4.1143 -0.5895 -9.3635 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077229975.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:32 Heat of formation + Delta-G solvation = -19.602393 kcal Electronic energy + Delta-G solvation = -25928.983600 eV Core-core repulsion = 22008.550751 eV Total energy + Delta-G solvation = -3920.432849 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.65989 -39.89401 -39.37926 -36.75943 -35.06575 -34.27663 -32.43630 -32.08713 -30.87359 -29.08914 -28.54217 -27.55208 -25.61006 -24.59938 -22.85166 -21.81586 -21.67534 -20.52046 -20.36756 -18.43803 -17.84329 -16.76456 -16.65072 -16.46008 -16.37529 -16.00025 -15.44160 -15.06584 -14.94284 -14.68358 -14.51677 -14.26224 -13.93019 -13.73938 -13.63420 -13.40955 -13.35041 -13.20018 -12.99682 -12.79121 -12.29754 -12.07410 -11.87008 -11.64610 -11.26130 -11.18569 -11.00300 -10.83545 -10.59485 -10.28197 -10.19953 -9.85404 -9.58223 -9.51955 -9.09054 -9.03636 -8.98113 -8.49761 -6.91130 -6.28396 -3.99989 0.85343 1.99935 2.38358 2.76047 2.83915 2.92515 2.96364 3.29710 3.34375 3.50714 3.65110 4.03280 4.21413 4.33133 4.33583 4.36885 4.55080 4.60182 4.64817 4.73946 4.76175 4.88200 5.10578 5.12058 5.14527 5.18569 5.25202 5.31847 5.48450 5.56706 5.59142 5.68963 5.76927 5.89932 5.91720 6.00378 6.01986 6.09514 6.52906 6.54341 6.98190 7.39641 7.58432 7.73883 7.94694 8.42327 8.48117 9.17763 10.80860 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014968 B = 0.002022 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.204502 B =13845.553524 C =15165.354309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.092 0.908 4 C -0.138 4.138 5 C 0.119 3.881 6 N -0.717 5.717 7 C 0.593 3.407 8 O -0.538 6.538 9 C -0.087 4.087 10 C 0.037 3.963 11 N -0.498 5.498 12 C 0.206 3.794 13 N -0.426 5.426 14 C 0.062 3.938 15 N -0.734 5.734 16 C 0.533 3.467 17 O -0.518 6.518 18 C -0.125 4.125 19 S -0.142 6.142 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.402 0.598 36 H 0.178 0.822 37 H 0.213 0.787 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.108 0.892 41 H 0.399 0.601 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.397 -4.093 30.627 30.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.042 3.958 3 H 0.110 0.890 4 C -0.177 4.177 5 C -0.004 4.004 6 N -0.369 5.369 7 C 0.379 3.621 8 O -0.416 6.416 9 C -0.205 4.205 10 C -0.118 4.118 11 N -0.215 5.215 12 C -0.076 4.076 13 N -0.106 5.106 14 C -0.080 4.080 15 N -0.389 5.389 16 C 0.319 3.681 17 O -0.393 6.393 18 C -0.276 4.276 19 S 0.085 5.915 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.114 4.114 23 N -0.517 5.517 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.237 0.763 36 H 0.195 0.805 37 H 0.230 0.770 38 H 0.100 0.900 39 H 0.108 0.892 40 H 0.127 0.873 41 H 0.233 0.767 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.476 -2.123 30.360 30.470 hybrid contribution 0.477 -1.045 -0.725 1.358 sum 1.953 -3.168 29.635 29.868 Atomic orbital electron populations 1.22171 0.94862 1.02236 1.02871 1.20782 0.94263 0.97699 0.83091 0.89024 1.22121 0.94291 1.02338 0.98923 1.21471 0.93776 0.97881 0.87224 1.45605 1.06513 1.57283 1.27511 1.16772 0.82744 0.78535 0.84036 1.90838 1.54556 1.47775 1.48454 1.20775 0.85598 1.13933 1.00148 1.22637 0.99739 0.99105 0.90312 1.70164 1.00293 1.23298 1.27786 1.25190 0.98224 0.97530 0.86673 1.45305 1.07255 1.41221 1.16802 1.22375 0.85000 0.99830 1.00745 1.46097 1.69299 1.13981 1.09514 1.20269 0.76784 0.87215 0.83844 1.90699 1.48409 1.15721 1.84433 1.23290 1.04485 1.03477 0.96319 1.84774 1.87160 1.16834 1.02765 1.22318 1.50406 0.98770 0.95375 0.89400 1.24722 0.93383 0.98301 0.94965 1.69937 1.43399 1.35800 1.02567 0.86728 0.81114 0.84847 0.79117 1.19213 1.19960 1.15928 0.92404 0.91775 0.91461 0.89498 0.90346 0.90486 0.90866 0.76272 0.80476 0.77014 0.89989 0.89188 0.87333 0.76722 0.88522 0.88490 0.91953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.48 37.15 0.35 -1.10 16 2 C 0.15 1.38 2.57 -67.93 -0.17 1.20 16 3 H 0.09 1.05 7.58 -51.93 -0.39 0.66 16 4 C -0.14 -0.79 4.87 -26.73 -0.13 -0.92 16 5 C 0.12 0.96 5.57 -4.04 -0.02 0.94 16 6 N -0.72 -5.06 5.54 -61.59 -0.34 -5.40 16 7 C 0.59 5.97 7.78 -12.82 -0.10 5.87 16 8 O -0.54 -7.35 14.83 5.21 0.08 -7.28 16 9 C -0.09 -0.78 6.91 -82.14 -0.57 -1.35 16 10 C 0.04 0.29 11.37 -17.47 -0.20 0.09 16 11 N -0.50 -4.49 11.20 -14.43 -0.16 -4.65 16 12 C 0.21 1.41 12.52 -90.57 -1.13 0.28 16 13 N -0.43 -3.31 3.17 -121.98 -0.39 -3.70 16 14 C 0.06 0.36 10.79 59.85 0.65 1.00 16 15 N -0.73 -8.41 4.53 -53.81 -0.24 -8.65 16 16 C 0.53 9.05 7.81 -10.99 -0.09 8.96 16 17 O -0.52 -10.77 15.53 5.55 0.09 -10.68 16 18 C -0.13 -2.39 6.16 36.01 0.22 -2.16 16 19 S -0.14 -3.59 18.55 -107.50 -1.99 -5.58 16 20 C -0.52 -15.06 10.04 30.94 0.31 -14.75 16 21 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 22 C 0.09 2.79 5.50 -17.43 -0.10 2.69 16 23 N -0.88 -26.68 13.97 55.49 0.78 -25.90 16 24 Si 0.86 21.88 27.74 -169.99 -4.71 17.17 16 25 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 27 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.76 7.75 -51.93 -0.40 0.36 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.40 1.58 7.42 -40.82 -0.30 1.28 16 36 H 0.18 0.79 7.46 -52.49 -0.39 0.40 16 37 H 0.21 0.57 8.06 -52.49 -0.42 0.14 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.11 0.88 6.31 -51.93 -0.33 0.55 16 41 H 0.40 3.54 8.60 -40.82 -0.35 3.19 16 42 H 0.10 1.74 8.14 -51.91 -0.42 1.32 16 43 H 0.10 1.72 8.14 -51.92 -0.42 1.29 16 44 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 388.32 15.07 5.85 5.85 Total: -1.00 -38.87 388.32 -8.43 -47.29 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -6.40 Total: 0.77 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -0.98 Total: 0.75 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: -0.36 Total: -48.30 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: 0.16 Total: -17.96 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.71 Total: 17.17 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -38.87 -8.43 -47.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077229975.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.692 kcal (2) G-P(sol) polarization free energy of solvation -38.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds