Wall clock time and date at job start Sat Apr 11 2020 05:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 109.47246 * 2 1 4 4 C 1.53000 * 109.47109 * 119.99985 * 2 1 3 5 5 C 1.52998 * 109.47100 * 185.00056 * 4 2 1 6 6 N 1.46509 * 109.47117 * 179.97438 * 5 4 2 7 7 C 1.34776 * 119.99934 * 180.02562 * 6 5 4 8 8 O 1.21679 * 120.00074 * 354.54150 * 7 6 5 9 9 C 1.46759 * 119.99791 * 174.54876 * 7 6 5 10 10 C 1.36664 * 126.84732 * 4.90428 * 9 7 6 11 11 N 1.33321 * 107.78724 * 179.97438 * 10 9 7 12 12 C 1.30858 * 109.68576 * 359.97438 * 11 10 9 13 13 N 1.34494 * 109.16121 * 359.76649 * 12 11 10 14 14 C 1.46500 * 126.47029 * 180.25011 * 13 12 11 15 15 N 1.46500 * 109.47437 * 240.00024 * 2 1 3 16 16 C 1.34770 * 120.00292 * 84.99575 * 15 2 1 17 17 O 1.21285 * 119.99984 * 0.02562 * 16 15 2 18 18 C 1.50705 * 120.00373 * 180.02562 * 16 15 2 19 19 S 1.81000 * 109.47393 * 180.02562 * 18 16 15 20 20 C 1.76195 * 99.99831 * 179.97438 * 19 18 16 21 21 H 1.07996 * 120.00666 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99681 * 179.97438 * 20 19 18 23 23 N 1.31631 * 119.99920 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 120.00041 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47043 * 90.00198 * 24 22 20 26 26 H 1.48503 * 109.47018 * 209.99724 * 24 22 20 27 27 H 1.48494 * 109.47149 * 330.00326 * 24 22 20 28 28 H 1.08997 * 109.47246 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47469 * 300.00216 * 1 2 3 30 30 H 1.09000 * 109.47419 * 60.00142 * 1 2 3 31 31 H 1.09002 * 109.47004 * 304.99866 * 4 2 1 32 32 H 1.08996 * 109.46990 * 64.99755 * 4 2 1 33 33 H 1.09003 * 109.47560 * 299.99842 * 5 4 2 34 34 H 1.08996 * 109.47445 * 59.99977 * 5 4 2 35 35 H 0.96994 * 119.99671 * 359.97438 * 6 5 4 36 36 H 1.07998 * 126.10257 * 359.96812 * 10 9 7 37 37 H 1.07996 * 125.41461 * 179.97438 * 12 11 10 38 38 H 1.09001 * 109.47356 * 272.01281 * 14 13 12 39 39 H 1.08998 * 109.47644 * 32.01783 * 14 13 12 40 40 H 1.09002 * 109.46842 * 152.01661 * 14 13 12 41 41 H 0.97002 * 119.99972 * 265.00110 * 15 2 1 42 42 H 1.09010 * 109.46805 * 300.00413 * 18 16 15 43 43 H 1.09000 * 109.47156 * 59.99969 * 18 16 15 44 44 H 0.96993 * 120.00156 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5647 -0.6133 1.3137 6 7 4.0530 -1.3034 2.5103 7 6 5.3739 -1.3386 2.7760 8 8 6.1682 -0.8848 1.9737 9 6 5.8540 -1.9245 4.0330 10 6 5.1010 -2.5535 4.9843 11 7 5.9199 -2.9368 5.9641 12 6 7.1465 -2.5821 5.6775 13 7 7.1583 -1.9558 4.4874 14 6 8.3321 -1.4074 3.8035 15 7 2.0183 -0.6906 -1.1961 16 6 2.1470 -0.0183 -2.3571 17 8 1.8589 1.1585 -2.4115 18 6 2.6489 -0.7289 -3.5877 19 16 2.7106 0.4343 -4.9731 20 6 3.3137 -0.6310 -6.2403 21 1 3.5223 -1.6675 -6.0206 22 6 3.5198 -0.1381 -7.5214 23 7 3.9700 -0.9340 -8.4683 24 14 3.1571 1.6544 -7.9022 25 1 4.3757 2.4680 -7.6613 26 1 2.7474 1.7854 -9.3236 27 1 2.0598 2.1346 -7.0244 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6053 -0.2617 2.1370 32 1 1.7515 -1.7714 1.2056 33 1 3.9994 -1.0728 0.4260 34 1 3.8531 0.4369 1.3573 35 1 3.4256 -1.7343 3.1115 36 1 4.0333 -2.7117 4.9488 37 1 8.0121 -2.7663 6.2966 38 1 8.4988 -0.3820 4.1335 39 1 9.2070 -2.0124 4.0415 40 1 8.1639 -1.4197 2.7266 41 1 2.2490 -1.6318 -1.1526 42 1 3.6481 -1.1214 -3.3985 43 1 1.9760 -1.5507 -3.8326 44 1 4.1143 -0.5895 -9.3635 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077229975.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:31 Heat of formation + Delta-G solvation = -48.649768 kcal Electronic energy + Delta-G solvation = -25930.243189 eV Core-core repulsion = 22008.550751 eV Total energy + Delta-G solvation = -3921.692438 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.21082 -40.91123 -40.34357 -37.69585 -35.86092 -34.88559 -34.68432 -33.14864 -31.61855 -30.18971 -29.41010 -28.03103 -27.86132 -25.26727 -23.53316 -22.62985 -22.26508 -21.64023 -21.08704 -19.89940 -18.98708 -17.99192 -17.52617 -17.14801 -17.10004 -17.02105 -16.87420 -16.42096 -16.22092 -15.75568 -15.34013 -15.08691 -14.99930 -14.74911 -14.71760 -14.51656 -14.34081 -14.01217 -13.85673 -13.63760 -13.36795 -13.34114 -13.07341 -13.01223 -12.62112 -12.44300 -12.39860 -11.91073 -11.86898 -11.50757 -11.18395 -10.98582 -10.94590 -10.77023 -10.54779 -10.30340 -10.10702 -9.63794 -9.00382 -8.52749 -6.23353 0.25310 0.98651 1.30356 1.45791 1.47312 1.55653 1.59096 1.80531 2.22571 2.24532 2.27458 2.28176 2.71435 2.85334 3.52105 3.70435 3.78461 3.86032 3.93201 3.98873 4.05752 4.09032 4.22137 4.32379 4.42178 4.44267 4.46082 4.49868 4.63749 4.67857 4.84069 4.90260 5.02399 5.11818 5.16220 5.30319 5.36453 5.44617 5.55692 5.69510 6.05437 6.10102 6.39726 6.49387 6.85810 6.92330 7.09139 7.22954 8.59714 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014968 B = 0.002022 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.204502 B =13845.553524 C =15165.354309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.143 3.857 3 H 0.068 0.932 4 C -0.120 4.120 5 C 0.121 3.879 6 N -0.699 5.699 7 C 0.588 3.412 8 O -0.585 6.585 9 C -0.117 4.117 10 C 0.046 3.954 11 N -0.531 5.531 12 C 0.216 3.784 13 N -0.435 5.435 14 C 0.063 3.937 15 N -0.709 5.709 16 C 0.536 3.464 17 O -0.561 6.561 18 C -0.113 4.113 19 S -0.176 6.176 20 C -0.529 4.529 21 H 0.061 0.939 22 C 0.044 3.956 23 N -0.917 5.917 24 Si 0.915 3.085 25 H -0.263 1.263 26 H -0.258 1.258 27 H -0.236 1.236 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.031 0.969 31 H 0.116 0.884 32 H 0.106 0.894 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.420 0.580 36 H 0.206 0.794 37 H 0.250 0.750 38 H 0.087 0.913 39 H 0.122 0.878 40 H 0.080 0.920 41 H 0.415 0.585 42 H 0.108 0.892 43 H 0.114 0.886 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.507 -4.740 33.572 33.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.038 3.962 3 H 0.086 0.914 4 C -0.158 4.158 5 C -0.003 4.003 6 N -0.351 5.351 7 C 0.376 3.624 8 O -0.467 6.467 9 C -0.233 4.233 10 C -0.109 4.109 11 N -0.249 5.249 12 C -0.066 4.066 13 N -0.115 5.115 14 C -0.079 4.079 15 N -0.364 5.364 16 C 0.322 3.678 17 O -0.440 6.440 18 C -0.264 4.264 19 S 0.051 5.949 20 C -0.677 4.677 21 H 0.079 0.921 22 C -0.161 4.161 23 N -0.555 5.555 24 Si 0.737 3.263 25 H -0.188 1.188 26 H -0.182 1.182 27 H -0.160 1.160 28 H 0.094 0.906 29 H 0.107 0.893 30 H 0.051 0.949 31 H 0.135 0.865 32 H 0.124 0.876 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.259 0.741 36 H 0.223 0.777 37 H 0.266 0.734 38 H 0.105 0.895 39 H 0.140 0.860 40 H 0.099 0.901 41 H 0.252 0.748 42 H 0.126 0.874 43 H 0.132 0.868 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.551 -2.828 33.355 33.479 hybrid contribution 0.783 -0.972 -1.455 1.917 sum 1.334 -3.800 31.900 32.153 Atomic orbital electron populations 1.22122 0.93805 1.03261 1.02401 1.20993 0.94997 0.96916 0.83271 0.91371 1.22026 0.92093 1.03808 0.97851 1.21368 0.95420 0.96598 0.86863 1.45416 1.05965 1.56442 1.27266 1.17072 0.83226 0.78000 0.84095 1.90817 1.55855 1.50041 1.49974 1.20786 0.86613 1.15667 1.00261 1.23133 1.00965 0.97536 0.89290 1.70212 1.01377 1.24694 1.28610 1.25971 0.98855 0.95531 0.86233 1.45525 1.07355 1.41339 1.17238 1.22430 0.85526 1.00937 0.98968 1.45918 1.67322 1.14610 1.08507 1.19881 0.76760 0.86580 0.84602 1.90687 1.50741 1.17397 1.85141 1.23296 1.05931 1.02349 0.94859 1.84682 1.86926 1.18772 1.04536 1.22466 1.50209 0.98218 0.96791 0.92057 1.25590 0.93264 1.02353 0.94931 1.70015 1.44503 1.37736 1.03233 0.85852 0.80970 0.79866 0.79581 1.18822 1.18222 1.16005 0.90570 0.89300 0.94933 0.86535 0.87566 0.92530 0.92872 0.74130 0.77696 0.73387 0.89453 0.85981 0.90119 0.74811 0.87385 0.86804 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.48 71.98 0.68 -1.71 16 2 C 0.14 2.39 2.57 44.99 0.12 2.50 16 3 H 0.07 1.52 7.58 -2.39 -0.02 1.51 16 4 C -0.12 -0.96 4.87 30.59 0.15 -0.81 16 5 C 0.12 1.79 5.57 86.38 0.48 2.27 16 6 N -0.70 -8.67 5.54 -467.00 -2.59 -11.26 16 7 C 0.59 11.68 7.78 86.47 0.67 12.35 16 8 O -0.59 -16.64 14.83 -4.28 -0.06 -16.71 16 9 C -0.12 -1.96 6.91 40.01 0.28 -1.69 16 10 C 0.05 0.62 11.37 84.10 0.96 1.58 16 11 N -0.53 -8.46 11.20 -199.56 -2.24 -10.70 16 12 C 0.22 2.49 12.52 180.33 2.26 4.75 16 13 N -0.43 -6.27 3.17 -539.82 -1.71 -7.98 16 14 C 0.06 0.68 10.79 127.77 1.38 2.06 16 15 N -0.71 -15.13 4.53 -442.55 -2.00 -17.14 16 16 C 0.54 17.98 7.81 87.66 0.68 18.66 16 17 O -0.56 -23.57 15.53 -3.05 -0.05 -23.62 16 18 C -0.11 -4.29 6.16 71.24 0.44 -3.85 16 19 S -0.18 -8.98 18.55 -56.49 -1.05 -10.03 16 20 C -0.53 -31.22 10.04 67.96 0.68 -30.54 16 21 H 0.06 3.81 8.03 -2.91 -0.02 3.79 16 22 C 0.04 2.61 5.50 84.86 0.47 3.08 16 23 N -0.92 -56.42 13.97 21.65 0.30 -56.12 16 24 Si 0.92 45.59 27.74 68.60 1.90 47.49 16 25 H -0.26 -12.85 7.11 99.48 0.71 -12.14 16 26 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 27 H -0.24 -11.72 6.74 99.48 0.67 -11.04 16 28 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.06 1.08 7.75 -2.39 -0.02 1.06 16 34 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.42 2.00 7.42 -92.71 -0.69 1.31 16 36 H 0.21 1.21 7.46 -2.91 -0.02 1.18 16 37 H 0.25 0.53 8.06 -2.91 -0.02 0.51 16 38 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.08 1.39 6.31 -2.39 -0.02 1.37 16 41 H 0.41 6.32 8.60 -92.71 -0.80 5.52 16 42 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 43 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 44 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -88.74 388.32 1.26 -87.47 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -0.49 Total: 9.95 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: 9.24 Total: 8.64 kcal Atomic # 7 Polarization: -94.95 SS G_CDS: -8.24 Total: -103.19 kcal Atomic # 8 Polarization: -40.21 SS G_CDS: -0.11 Total: -40.33 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.90 Total: 47.49 kcal Atomic # 16 Polarization: -8.98 SS G_CDS: -1.05 Total: -10.03 kcal Total: -88.74 1.26 -87.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077229975.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.824 kcal (2) G-P(sol) polarization free energy of solvation -88.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds