Wall clock time and date at job start Sat Apr 11 2020 05:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46932 * 2 1 4 4 C 1.50700 * 109.46905 * 239.99794 * 2 1 3 5 5 O 1.21282 * 120.00128 * 239.99751 * 4 2 1 6 6 N 1.34777 * 119.99831 * 60.00151 * 4 2 1 7 7 C 1.46502 * 119.99627 * 179.97438 * 6 4 2 8 8 H 1.09000 * 110.89226 * 31.12100 * 7 6 4 9 9 C 1.54911 * 111.00293 * 267.19243 * 7 6 4 10 10 N 1.47427 * 104.82921 * 204.91865 * 9 7 6 11 11 C 1.36938 * 125.64489 * 204.08518 * 10 9 7 12 12 H 1.08002 * 120.00416 * 0.02976 * 11 10 9 13 13 C 1.38814 * 119.99938 * 180.02562 * 11 10 9 14 14 N 1.31616 * 119.99936 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00004 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47250 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46764 * 119.99870 * 15 13 11 18 18 H 1.48496 * 109.47618 * 240.00297 * 15 13 11 19 19 C 1.47016 * 108.70847 * 24.13386 * 10 9 7 20 20 C 1.54325 * 107.26864 * 358.93750 * 19 10 9 21 21 H 1.09002 * 110.72323 * 96.17169 * 20 19 10 22 22 O 1.42903 * 110.87325 * 219.37494 * 20 19 10 23 23 C 1.50697 * 109.47044 * 119.99981 * 2 1 3 24 24 C 1.38416 * 120.02347 * 239.99570 * 23 2 1 25 25 F 1.35104 * 120.01432 * 359.95946 * 24 23 2 26 26 C 1.38476 * 119.97718 * 180.23132 * 24 23 2 27 27 C 1.38219 * 120.02024 * 359.49222 * 26 24 23 28 28 C 1.38204 * 120.04794 * 0.51398 * 27 26 24 29 29 C 1.38417 * 120.02624 * 59.97885 * 23 2 1 30 30 F 1.35104 * 120.01211 * 0.04097 * 29 23 2 31 31 H 1.08997 * 109.46717 * 300.00503 * 1 2 3 32 32 H 1.09003 * 109.47087 * 59.99969 * 1 2 3 33 33 H 1.08993 * 109.47431 * 180.02562 * 1 2 3 34 34 H 0.97000 * 120.00337 * 359.97438 * 6 4 2 35 35 H 1.08998 * 110.37206 * 323.75811 * 9 7 6 36 36 H 1.09002 * 110.36407 * 86.08071 * 9 7 6 37 37 H 0.96999 * 119.99459 * 180.02562 * 14 13 11 38 38 H 1.08997 * 109.87882 * 239.52497 * 19 10 9 39 39 H 1.08995 * 110.01554 * 118.42732 * 19 10 9 40 40 H 0.96693 * 113.99819 * 293.60867 * 22 20 19 41 41 H 1.07998 * 119.99389 * 179.75170 * 26 24 23 42 42 H 1.07991 * 119.97158 * 180.23124 * 27 26 24 43 43 H 1.08003 * 119.98397 * 179.71938 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7067 -0.2500 -2.4545 7 6 2.1955 -0.9404 -3.6507 8 1 2.3066 -2.0086 -3.4648 9 6 3.5264 -0.3204 -4.1447 10 7 3.5793 -0.6377 -5.5835 11 6 4.7170 -0.7194 -6.3413 12 1 5.6816 -0.5445 -5.8881 13 6 4.6304 -1.0272 -7.6921 14 7 3.4549 -1.2399 -8.2446 15 14 6.1822 -1.1380 -8.7261 16 1 7.3658 -0.8575 -7.8741 17 1 6.2982 -2.5029 -9.2998 18 1 6.1165 -0.1426 -9.8260 19 6 2.2085 -0.8505 -6.0701 20 6 1.2623 -0.6810 -4.8629 21 1 0.8580 0.3307 -4.8288 22 8 0.2072 -1.6439 -4.9038 23 6 2.0324 -0.7104 1.2304 24 6 2.8282 -0.0382 2.1418 25 9 3.1558 1.2550 1.9283 26 6 3.2932 -0.6933 3.2698 27 6 2.9542 -2.0149 3.4909 28 6 2.1597 -2.6870 2.5815 29 6 1.6979 -2.0354 1.4503 30 9 0.9216 -2.6929 0.5612 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.1488 0.5385 -2.5436 35 1 3.5211 0.7591 -3.9942 36 1 4.3713 -0.7725 -3.6252 37 1 3.3946 -1.4554 -9.1884 38 1 2.1121 -1.8566 -6.4782 39 1 1.9664 -0.1148 -6.8370 40 1 -0.4046 -1.5259 -5.6432 41 1 3.9175 -0.1703 3.9790 42 1 3.3142 -2.5239 4.3727 43 1 1.8992 -3.7210 2.7530 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077392897.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:38 Heat of formation + Delta-G solvation = -143.638995 kcal Electronic energy + Delta-G solvation = -30132.737487 eV Core-core repulsion = 25620.792870 eV Total energy + Delta-G solvation = -4511.944618 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -50.05526 -49.99603 -41.34750 -39.94256 -39.19672 -36.71100 -35.67306 -35.34147 -33.58998 -31.24589 -30.81045 -30.00473 -28.74616 -26.56605 -25.67670 -23.88197 -23.57501 -22.36105 -21.93245 -21.22981 -19.23763 -19.08841 -18.77711 -18.27460 -17.78343 -17.45893 -16.94234 -16.87608 -16.57108 -16.38571 -16.32761 -16.05637 -15.76467 -15.57218 -15.37178 -14.81491 -14.72327 -14.49448 -14.32081 -13.81745 -13.76742 -13.62504 -13.29271 -13.19681 -13.17606 -13.07654 -12.88615 -12.79294 -12.75929 -12.50011 -12.07830 -11.94551 -11.91989 -11.57430 -11.14204 -10.83786 -10.79780 -10.20790 -9.88997 -9.70743 -9.00082 -7.91391 -5.28954 -0.03878 0.02123 1.43971 1.45649 1.53761 1.56009 1.96215 2.41705 2.47311 2.92267 3.09916 3.23442 3.29337 3.42432 3.51653 3.55036 3.76524 3.88231 3.92119 4.02305 4.05547 4.16378 4.22700 4.25217 4.40783 4.52603 4.66767 4.74081 4.77149 4.84744 4.89230 4.96207 5.03986 5.07702 5.18978 5.21824 5.33744 5.39757 5.42318 5.63487 5.80080 6.10595 6.46368 6.84899 7.02003 7.17259 7.66040 8.28595 9.18493 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.017324 B = 0.002816 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.862478 B = 9942.075773 C =10538.582125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.065 4.065 3 H 0.130 0.870 4 C 0.516 3.484 5 O -0.573 6.573 6 N -0.698 5.698 7 C 0.154 3.846 8 H 0.068 0.932 9 C 0.132 3.868 10 N -0.622 5.622 11 C -0.249 4.249 12 H 0.081 0.919 13 C -0.061 4.061 14 N -0.947 5.947 15 Si 0.982 3.018 16 H -0.268 1.268 17 H -0.292 1.292 18 H -0.286 1.286 19 C 0.162 3.838 20 C 0.092 3.908 21 H 0.096 0.904 22 O -0.569 6.569 23 C -0.159 4.159 24 C 0.118 3.882 25 F -0.135 7.135 26 C -0.162 4.162 27 C -0.050 4.050 28 C -0.171 4.171 29 C 0.130 3.870 30 F -0.141 7.141 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.054 0.946 34 H 0.417 0.583 35 H 0.044 0.956 36 H 0.031 0.969 37 H 0.250 0.750 38 H 0.020 0.980 39 H 0.028 0.972 40 H 0.396 0.604 41 H 0.170 0.830 42 H 0.183 0.817 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.545 4.717 25.161 26.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.086 4.086 3 H 0.148 0.852 4 C 0.303 3.697 5 O -0.452 6.452 6 N -0.350 5.350 7 C 0.047 3.953 8 H 0.086 0.914 9 C 0.005 3.995 10 N -0.350 5.350 11 C -0.378 4.378 12 H 0.098 0.902 13 C -0.254 4.254 14 N -0.596 5.596 15 Si 0.810 3.190 16 H -0.192 1.192 17 H -0.219 1.219 18 H -0.212 1.212 19 C 0.036 3.964 20 C 0.031 3.969 21 H 0.114 0.886 22 O -0.376 6.376 23 C -0.162 4.162 24 C 0.099 3.901 25 F -0.113 7.113 26 C -0.181 4.181 27 C -0.068 4.068 28 C -0.190 4.190 29 C 0.111 3.889 30 F -0.119 7.119 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.073 0.927 34 H 0.254 0.746 35 H 0.062 0.938 36 H 0.049 0.951 37 H 0.059 0.941 38 H 0.038 0.962 39 H 0.046 0.954 40 H 0.246 0.754 41 H 0.188 0.812 42 H 0.200 0.800 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -7.731 3.792 25.518 26.932 hybrid contribution 0.289 0.281 -2.070 2.109 sum -7.443 4.073 23.448 24.935 Atomic orbital electron populations 1.21870 0.89487 1.03469 1.05036 1.20199 0.99771 1.00746 0.87869 0.85192 1.20968 0.79366 0.84083 0.85249 1.90706 1.39370 1.27960 1.87125 1.45598 1.53221 1.32049 1.04102 1.21715 0.93060 0.96722 0.83763 0.91355 1.21924 0.95343 0.97659 0.84598 1.44516 1.02975 1.82908 1.04555 1.19481 0.86021 1.41165 0.91116 0.90156 1.25667 1.00293 1.01612 0.97862 1.70135 1.23258 1.54693 1.11499 0.84968 0.78758 0.76920 0.78399 1.19243 1.21875 1.21238 1.21616 0.83175 0.98856 0.92776 1.23157 0.87389 0.92479 0.93829 0.88608 1.86445 1.41358 1.55812 1.54033 1.19494 1.03871 0.94552 0.98235 1.17383 0.97554 0.79154 0.96022 1.91495 1.90797 1.34149 1.94866 1.21552 1.02926 0.96431 0.97155 1.21303 0.93604 0.92803 0.99063 1.21562 1.01221 1.02530 0.93708 1.17522 0.93147 0.89658 0.88577 1.91479 1.72110 1.80643 1.67665 0.89108 0.89357 0.92717 0.74560 0.93808 0.95108 0.94093 0.96225 0.95370 0.75371 0.81223 0.79983 0.82424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 8.88 71.98 0.64 -1.83 16 2 C -0.06 -1.48 2.79 -12.28 -0.03 -1.51 16 3 H 0.13 2.47 7.13 -2.39 -0.02 2.45 16 4 C 0.52 16.36 6.60 87.66 0.58 16.94 16 5 O -0.57 -23.62 14.20 -3.04 -0.04 -23.67 16 6 N -0.70 -20.62 5.09 -435.94 -2.22 -22.84 16 7 C 0.15 5.98 3.15 46.39 0.15 6.13 16 8 H 0.07 3.20 7.54 -2.39 -0.02 3.18 16 9 C 0.13 5.81 6.93 86.86 0.60 6.41 16 10 N -0.62 -33.06 3.39 -692.00 -2.35 -35.41 16 11 C -0.25 -14.42 10.28 84.03 0.86 -13.56 16 12 H 0.08 4.51 7.83 -2.91 -0.02 4.49 16 13 C -0.06 -3.52 5.49 84.86 0.47 -3.05 16 14 N -0.95 -56.73 10.31 21.65 0.22 -56.51 16 15 Si 0.98 46.40 29.55 68.60 2.03 48.43 16 16 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 17 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 18 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 19 C 0.16 7.94 5.15 86.73 0.45 8.38 16 20 C 0.09 3.35 3.97 31.79 0.13 3.48 16 21 H 0.10 2.82 8.00 -2.39 -0.02 2.80 16 22 O -0.57 -19.45 13.40 -148.98 -2.00 -21.45 16 23 C -0.16 -3.82 4.41 -19.78 -0.09 -3.91 16 24 C 0.12 2.42 7.25 22.37 0.16 2.59 16 25 F -0.13 -2.81 16.19 44.97 0.73 -2.08 16 26 C -0.16 -2.34 10.03 22.32 0.22 -2.12 16 27 C -0.05 -0.62 10.04 22.26 0.22 -0.40 16 28 C -0.17 -3.07 10.02 22.32 0.22 -2.85 16 29 C 0.13 3.26 6.13 22.37 0.14 3.40 16 30 F -0.14 -4.23 13.81 44.97 0.62 -3.61 16 31 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.09 1.20 7.56 -2.39 -0.02 1.19 16 33 H 0.05 1.17 6.31 -2.39 -0.02 1.15 16 34 H 0.42 8.93 7.98 -92.71 -0.74 8.19 16 35 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 38 H 0.02 1.11 7.30 -2.39 -0.02 1.09 16 39 H 0.03 1.48 7.50 -2.39 -0.02 1.46 16 40 H 0.40 9.98 9.12 -74.06 -0.68 9.30 16 41 H 0.17 1.44 8.06 -2.91 -0.02 1.41 16 42 H 0.18 0.76 8.06 -2.92 -0.02 0.73 16 43 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -79.71 361.56 1.37 -78.35 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: -0.34 Total: 20.68 kcal Atomic # 6 Polarization: 13.40 SS G_CDS: 4.72 Total: 18.12 kcal Atomic # 7 Polarization: -110.42 SS G_CDS: -4.34 Total: -114.76 kcal Atomic # 8 Polarization: -43.08 SS G_CDS: -2.04 Total: -45.11 kcal Atomic # 9 Polarization: -7.04 SS G_CDS: 1.35 Total: -5.69 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -79.71 1.37 -78.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077392897.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.293 kcal (2) G-P(sol) polarization free energy of solvation -79.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds