Wall clock time and date at job start Sat Apr 11 2020 05:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47122 * 2 1 4 4 C 1.52998 * 109.47241 * 120.00401 * 2 1 3 5 5 C 1.52999 * 109.47306 * 184.99769 * 4 2 1 6 6 N 1.46497 * 109.46992 * 180.02562 * 5 4 2 7 7 C 1.34777 * 119.99525 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00463 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.99675 * 179.72583 * 7 6 5 10 10 C 1.50703 * 109.47148 * 180.28037 * 9 7 6 11 11 N 1.30505 * 125.64624 * 304.69056 * 10 9 7 12 12 C 1.34129 * 109.25323 * 179.89406 * 11 10 9 13 13 C 1.34664 * 108.02093 * 0.36967 * 12 11 10 14 14 N 1.35040 * 125.65352 * 125.00200 * 10 9 7 15 15 H 0.96998 * 126.39460 * 359.97438 * 14 10 9 16 16 N 1.46504 * 109.46630 * 240.00493 * 2 1 3 17 17 C 1.34774 * 120.00037 * 85.00334 * 16 2 1 18 18 O 1.21282 * 120.00219 * 359.97438 * 17 16 2 19 19 C 1.50703 * 119.99700 * 179.97438 * 17 16 2 20 20 S 1.81003 * 109.46726 * 179.97438 * 19 17 16 21 21 C 1.76197 * 99.99942 * 180.02562 * 20 19 17 22 22 H 1.08005 * 119.99941 * 359.97438 * 21 20 19 23 23 C 1.38805 * 120.00422 * 179.97438 * 21 20 19 24 24 N 1.31627 * 119.99928 * 179.97438 * 23 21 20 25 25 Si 1.86795 * 119.99507 * 359.97438 * 23 21 20 26 26 H 1.48505 * 109.47079 * 90.00290 * 25 23 21 27 27 H 1.48503 * 109.46952 * 210.00151 * 25 23 21 28 28 H 1.48499 * 109.47306 * 329.99918 * 25 23 21 29 29 H 1.09004 * 109.46818 * 299.99860 * 1 2 3 30 30 H 1.09003 * 109.47107 * 59.99448 * 1 2 3 31 31 H 1.08996 * 109.47315 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.46771 * 64.99558 * 4 2 1 33 33 H 1.08993 * 109.47193 * 305.00031 * 4 2 1 34 34 H 1.08995 * 109.46838 * 59.99948 * 5 4 2 35 35 H 1.09001 * 109.46617 * 300.00283 * 5 4 2 36 36 H 0.97000 * 120.00580 * 0.02562 * 6 5 4 37 37 H 1.09009 * 109.47352 * 300.27556 * 9 7 6 38 38 H 1.08998 * 109.47585 * 60.27844 * 9 7 6 39 39 H 1.07998 * 125.98565 * 180.18389 * 12 11 10 40 40 H 1.08007 * 126.59362 * 179.81062 * 13 12 11 41 41 H 0.96994 * 119.99758 * 264.99631 * 16 2 1 42 42 H 1.08996 * 109.47201 * 299.99568 * 19 17 16 43 43 H 1.08992 * 109.47312 * 60.00172 * 19 17 16 44 44 H 0.97006 * 119.99409 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6134 1.3136 6 7 4.0532 -1.3046 2.5094 7 6 5.3741 -1.3410 2.7744 8 8 6.1585 -0.8011 2.0232 9 6 5.8760 -2.0467 4.0077 10 6 7.3775 -1.9362 4.0738 11 7 8.2092 -2.3056 3.1384 12 6 9.4648 -2.0573 3.5397 13 6 9.4094 -1.5210 4.7736 14 7 8.0856 -1.4440 5.1130 15 1 7.7236 -1.1002 5.9447 16 7 2.0182 -0.6905 -1.1963 17 6 2.1470 -0.0181 -2.3572 18 8 1.8582 1.1586 -2.4117 19 6 2.6497 -0.7284 -3.5876 20 16 2.7098 0.4346 -4.9732 21 6 3.3129 -0.6305 -6.2407 22 1 3.5230 -1.6668 -6.0206 23 6 3.5179 -0.1378 -7.5221 24 7 3.9689 -0.9335 -8.4687 25 14 3.1538 1.6542 -7.9029 26 1 4.3721 2.4688 -7.6629 27 1 2.7431 1.7847 -9.3240 28 1 2.0566 2.1340 -7.0246 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7516 -1.7716 1.2054 33 1 1.6055 -0.2619 2.1369 34 1 3.8532 0.4368 1.3573 35 1 3.9994 -1.0729 0.4258 36 1 3.4260 -1.7368 3.1100 37 1 5.4385 -1.5859 4.8935 38 1 5.5906 -3.0978 3.9665 39 1 10.3629 -2.2558 2.9736 40 1 10.2483 -1.2107 5.3791 41 1 2.2489 -1.6316 -1.1528 42 1 3.6490 -1.1202 -3.3981 43 1 1.9775 -1.5505 -3.8327 44 1 4.1118 -0.5892 -9.3643 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078034235.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:43 Heat of formation + Delta-G solvation = -23.556802 kcal Electronic energy + Delta-G solvation = -25709.727239 eV Core-core repulsion = 21789.122914 eV Total energy + Delta-G solvation = -3920.604325 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.35638 -39.94169 -39.39481 -36.68362 -34.67303 -32.83534 -32.58010 -32.39295 -31.79464 -29.55860 -28.58232 -27.55097 -25.56706 -23.83392 -21.89803 -21.67361 -21.44993 -20.49330 -20.35217 -18.36732 -17.85781 -17.39791 -16.68902 -16.32325 -16.07757 -15.79376 -15.19669 -15.00849 -14.92486 -14.61096 -14.25697 -14.18176 -13.80222 -13.77246 -13.61477 -13.35815 -13.29297 -12.94926 -12.75413 -12.64191 -12.25604 -12.03030 -11.74104 -11.57826 -11.22248 -11.13666 -10.96567 -10.55346 -10.31197 -10.22580 -10.11290 -9.81598 -9.47653 -9.37772 -9.00115 -8.94010 -8.73442 -8.45472 -6.86752 -6.24332 -3.95638 1.66333 2.37666 2.52575 2.80429 2.84585 3.00987 3.10490 3.33498 3.38159 3.54097 3.69285 3.89649 4.37384 4.39110 4.41794 4.45558 4.68034 4.70427 4.78705 4.81213 4.84539 5.13194 5.14679 5.18781 5.22771 5.30554 5.35394 5.36853 5.54381 5.60261 5.73783 5.75325 5.82049 5.93704 6.07069 6.09313 6.12265 6.45411 6.58865 6.95544 7.16227 7.63172 7.83776 7.96767 7.98833 8.46729 8.52691 9.21888 10.84951 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011535 B = 0.002086 C = 0.001827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.835884 B =13419.829836 C =15319.146496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.091 0.909 4 C -0.137 4.137 5 C 0.118 3.882 6 N -0.734 5.734 7 C 0.512 3.488 8 O -0.505 6.505 9 C -0.053 4.053 10 C 0.213 3.787 11 N -0.458 5.458 12 C -0.024 4.024 13 C -0.056 4.056 14 N -0.567 5.567 15 H 0.417 0.583 16 N -0.734 5.734 17 C 0.533 3.467 18 O -0.519 6.519 19 C -0.125 4.125 20 S -0.142 6.142 21 C -0.520 4.520 22 H 0.088 0.912 23 C 0.095 3.905 24 N -0.881 5.881 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.275 1.275 28 H -0.235 1.235 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.399 0.601 37 H 0.106 0.894 38 H 0.120 0.880 39 H 0.171 0.829 40 H 0.178 0.822 41 H 0.399 0.601 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.008 -4.363 35.011 35.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.109 0.891 4 C -0.175 4.175 5 C -0.005 4.005 6 N -0.388 5.388 7 C 0.296 3.704 8 O -0.378 6.378 9 C -0.094 4.094 10 C -0.052 4.052 11 N -0.177 5.177 12 C -0.173 4.173 13 C -0.190 4.190 14 N -0.171 5.171 15 H 0.254 0.746 16 N -0.388 5.388 17 C 0.319 3.681 18 O -0.393 6.393 19 C -0.276 4.276 20 S 0.084 5.916 21 C -0.668 4.668 22 H 0.106 0.894 23 C -0.114 4.114 24 N -0.517 5.517 25 Si 0.682 3.318 26 H -0.192 1.192 27 H -0.200 1.200 28 H -0.159 1.159 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.232 0.768 37 H 0.124 0.876 38 H 0.138 0.862 39 H 0.188 0.812 40 H 0.195 0.805 41 H 0.233 0.767 42 H 0.116 0.884 43 H 0.115 0.885 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.006 -2.371 33.361 33.445 hybrid contribution 0.298 -0.892 1.160 1.493 sum 0.292 -3.264 34.521 34.676 Atomic orbital electron populations 1.22174 0.94972 1.02168 1.02800 1.20788 0.94158 0.97729 0.83223 0.89101 1.22102 0.94615 1.02106 0.98685 1.21399 0.93452 0.97943 0.87747 1.45923 1.07201 1.58040 1.27600 1.20134 0.82286 0.80944 0.87038 1.90840 1.54811 1.43599 1.48565 1.19898 0.87357 1.03885 0.98301 1.22310 0.94642 1.02570 0.85652 1.70269 1.00452 1.20482 1.26509 1.22433 0.95788 1.04576 0.94482 1.22758 0.85941 1.10009 1.00250 1.43201 1.07141 1.49546 1.17225 0.74597 1.46086 1.69280 1.13985 1.09489 1.20269 0.76751 0.87200 0.83857 1.90694 1.48461 1.15738 1.84451 1.23288 1.04539 1.03451 0.96288 1.84761 1.87136 1.16948 1.02746 1.22324 1.50355 0.98804 0.95315 0.89377 1.24719 0.93400 0.98279 0.94980 1.69944 1.43431 1.35803 1.02542 0.86729 0.81116 0.84899 0.79063 1.19204 1.19988 1.15947 0.91858 0.91492 0.92446 0.90510 0.89762 0.91205 0.90765 0.76759 0.87567 0.86230 0.81207 0.80518 0.76706 0.88446 0.88497 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.48 37.16 0.35 -1.14 16 2 C 0.15 1.44 2.57 -67.93 -0.17 1.27 16 3 H 0.09 1.10 7.58 -51.93 -0.39 0.71 16 4 C -0.14 -0.83 4.87 -26.73 -0.13 -0.96 16 5 C 0.12 1.02 5.56 -4.04 -0.02 1.00 16 6 N -0.73 -4.84 5.56 -60.30 -0.33 -5.18 16 7 C 0.51 4.95 7.82 -10.98 -0.09 4.87 16 8 O -0.51 -7.93 15.56 5.55 0.09 -7.85 16 9 C -0.05 -0.30 6.33 -29.03 -0.18 -0.49 16 10 C 0.21 2.00 6.95 -155.41 -1.08 0.92 16 11 N -0.46 -6.00 10.60 -10.82 -0.11 -6.12 16 12 C -0.02 -0.25 11.87 -17.81 -0.21 -0.46 16 13 C -0.06 -0.41 12.04 -16.56 -0.20 -0.61 16 14 N -0.57 -3.66 6.15 -10.23 -0.06 -3.72 16 15 H 0.42 1.05 8.96 -40.82 -0.37 0.68 16 16 N -0.73 -8.87 4.53 -53.80 -0.24 -9.11 16 17 C 0.53 9.40 7.81 -10.99 -0.09 9.31 16 18 O -0.52 -11.10 15.52 5.56 0.09 -11.01 16 19 C -0.13 -2.46 6.16 36.01 0.22 -2.24 16 20 S -0.14 -3.68 18.55 -107.50 -1.99 -5.68 16 21 C -0.52 -15.31 10.04 30.94 0.31 -15.00 16 22 H 0.09 2.70 8.03 -52.48 -0.42 2.28 16 23 C 0.09 2.83 5.50 -17.43 -0.10 2.73 16 24 N -0.88 -27.07 13.97 55.49 0.78 -26.30 16 25 Si 0.86 22.25 27.74 -169.99 -4.71 17.53 16 26 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.24 -6.08 6.74 56.52 0.38 -5.70 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.36 8.14 -51.92 -0.42 -0.07 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.82 7.75 -51.93 -0.40 0.42 16 36 H 0.40 1.07 8.47 -40.82 -0.35 0.73 16 37 H 0.11 0.17 8.14 -51.92 -0.42 -0.25 16 38 H 0.12 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.17 1.45 8.06 -52.49 -0.42 1.02 16 40 H 0.18 0.64 8.06 -52.48 -0.42 0.21 16 41 H 0.40 3.80 8.60 -40.82 -0.35 3.45 16 42 H 0.10 1.83 8.14 -51.92 -0.42 1.41 16 43 H 0.10 1.77 8.14 -51.92 -0.42 1.34 16 44 H 0.27 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 391.37 15.07 5.90 5.90 Total: -1.00 -42.38 391.37 -8.51 -50.89 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -6.51 Total: 1.43 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -1.39 Total: -0.80 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: 0.02 Total: -50.42 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: 0.17 Total: -18.86 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.71 Total: 17.53 kcal Atomic # 16 Polarization: -3.68 SS G_CDS: -1.99 Total: -5.68 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -42.38 -8.51 -50.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078034235.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.337 kcal (2) G-P(sol) polarization free energy of solvation -42.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds