Wall clock time and date at job start Sat Apr 11 2020 05:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47122 * 2 1 4 4 C 1.52998 * 109.47241 * 120.00401 * 2 1 3 5 5 C 1.52999 * 109.47306 * 184.99769 * 4 2 1 6 6 N 1.46497 * 109.46992 * 180.02562 * 5 4 2 7 7 C 1.34777 * 119.99525 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00463 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.99675 * 179.72583 * 7 6 5 10 10 C 1.50703 * 109.47148 * 180.28037 * 9 7 6 11 11 N 1.30505 * 125.64624 * 304.69056 * 10 9 7 12 12 C 1.34129 * 109.25323 * 179.89406 * 11 10 9 13 13 C 1.34664 * 108.02093 * 0.36967 * 12 11 10 14 14 N 1.35040 * 125.65352 * 125.00200 * 10 9 7 15 15 H 0.96998 * 126.39460 * 359.97438 * 14 10 9 16 16 N 1.46504 * 109.46630 * 240.00493 * 2 1 3 17 17 C 1.34774 * 120.00037 * 85.00334 * 16 2 1 18 18 O 1.21282 * 120.00219 * 359.97438 * 17 16 2 19 19 C 1.50703 * 119.99700 * 179.97438 * 17 16 2 20 20 S 1.81003 * 109.46726 * 179.97438 * 19 17 16 21 21 C 1.76197 * 99.99942 * 180.02562 * 20 19 17 22 22 H 1.08005 * 119.99941 * 359.97438 * 21 20 19 23 23 C 1.38805 * 120.00422 * 179.97438 * 21 20 19 24 24 N 1.31627 * 119.99928 * 179.97438 * 23 21 20 25 25 Si 1.86795 * 119.99507 * 359.97438 * 23 21 20 26 26 H 1.48505 * 109.47079 * 90.00290 * 25 23 21 27 27 H 1.48503 * 109.46952 * 210.00151 * 25 23 21 28 28 H 1.48499 * 109.47306 * 329.99918 * 25 23 21 29 29 H 1.09004 * 109.46818 * 299.99860 * 1 2 3 30 30 H 1.09003 * 109.47107 * 59.99448 * 1 2 3 31 31 H 1.08996 * 109.47315 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.46771 * 64.99558 * 4 2 1 33 33 H 1.08993 * 109.47193 * 305.00031 * 4 2 1 34 34 H 1.08995 * 109.46838 * 59.99948 * 5 4 2 35 35 H 1.09001 * 109.46617 * 300.00283 * 5 4 2 36 36 H 0.97000 * 120.00580 * 0.02562 * 6 5 4 37 37 H 1.09009 * 109.47352 * 300.27556 * 9 7 6 38 38 H 1.08998 * 109.47585 * 60.27844 * 9 7 6 39 39 H 1.07998 * 125.98565 * 180.18389 * 12 11 10 40 40 H 1.08007 * 126.59362 * 179.81062 * 13 12 11 41 41 H 0.96994 * 119.99758 * 264.99631 * 16 2 1 42 42 H 1.08996 * 109.47201 * 299.99568 * 19 17 16 43 43 H 1.08992 * 109.47312 * 60.00172 * 19 17 16 44 44 H 0.97006 * 119.99409 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6134 1.3136 6 7 4.0532 -1.3046 2.5094 7 6 5.3741 -1.3410 2.7744 8 8 6.1585 -0.8011 2.0232 9 6 5.8760 -2.0467 4.0077 10 6 7.3775 -1.9362 4.0738 11 7 8.2092 -2.3056 3.1384 12 6 9.4648 -2.0573 3.5397 13 6 9.4094 -1.5210 4.7736 14 7 8.0856 -1.4440 5.1130 15 1 7.7236 -1.1002 5.9447 16 7 2.0182 -0.6905 -1.1963 17 6 2.1470 -0.0181 -2.3572 18 8 1.8582 1.1586 -2.4117 19 6 2.6497 -0.7284 -3.5876 20 16 2.7098 0.4346 -4.9732 21 6 3.3129 -0.6305 -6.2407 22 1 3.5230 -1.6668 -6.0206 23 6 3.5179 -0.1378 -7.5221 24 7 3.9689 -0.9335 -8.4687 25 14 3.1538 1.6542 -7.9029 26 1 4.3721 2.4688 -7.6629 27 1 2.7431 1.7847 -9.3240 28 1 2.0566 2.1340 -7.0246 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7516 -1.7716 1.2054 33 1 1.6055 -0.2619 2.1369 34 1 3.8532 0.4368 1.3573 35 1 3.9994 -1.0729 0.4258 36 1 3.4260 -1.7368 3.1100 37 1 5.4385 -1.5859 4.8935 38 1 5.5906 -3.0978 3.9665 39 1 10.3629 -2.2558 2.9736 40 1 10.2483 -1.2107 5.3791 41 1 2.2489 -1.6316 -1.1528 42 1 3.6490 -1.1202 -3.3981 43 1 1.9775 -1.5505 -3.8327 44 1 4.1118 -0.5892 -9.3643 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078034235.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:42 Heat of formation + Delta-G solvation = -58.623241 kcal Electronic energy + Delta-G solvation = -25711.247834 eV Core-core repulsion = 21789.122914 eV Total energy + Delta-G solvation = -3922.124920 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.95662 -40.92988 -40.44493 -37.66691 -35.56978 -34.68745 -33.48783 -33.29239 -32.79572 -30.52433 -29.75252 -28.13400 -27.86425 -24.57261 -22.56564 -22.50499 -22.19049 -21.61688 -21.08136 -19.89945 -18.92189 -18.15246 -17.94952 -17.36921 -17.08800 -16.83930 -16.61751 -16.39212 -15.99320 -15.73830 -15.19327 -15.00873 -14.83127 -14.80047 -14.72885 -14.49601 -14.35951 -14.00189 -13.87457 -13.37169 -13.33817 -13.11858 -13.05173 -13.01277 -12.61716 -12.39409 -12.34968 -11.89113 -11.86456 -11.18710 -11.00455 -10.98534 -10.94665 -10.84902 -10.55759 -10.18108 -10.03039 -9.34767 -9.00966 -8.52923 -6.23708 0.97898 1.08887 1.30303 1.45311 1.55086 1.58094 1.69400 1.95332 2.22529 2.25544 2.27791 2.52009 2.70948 2.85077 3.38653 3.74641 3.82800 3.93446 4.04574 4.08746 4.14055 4.21441 4.41397 4.44893 4.45312 4.46204 4.51328 4.61741 4.68665 4.79854 4.84121 4.92359 5.07521 5.13559 5.17118 5.35915 5.46439 5.55889 5.69360 5.82204 6.09846 6.48366 6.53616 6.65871 6.91992 7.22080 7.22454 7.36503 8.59649 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011535 B = 0.002086 C = 0.001827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.835884 B =13419.829836 C =15319.146496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.141 3.859 3 H 0.065 0.935 4 C -0.117 4.117 5 C 0.119 3.881 6 N -0.711 5.711 7 C 0.506 3.494 8 O -0.577 6.577 9 C -0.045 4.045 10 C 0.198 3.802 11 N -0.521 5.521 12 C -0.073 4.073 13 C -0.035 4.035 14 N -0.553 5.553 15 H 0.437 0.563 16 N -0.709 5.709 17 C 0.536 3.464 18 O -0.562 6.562 19 C -0.114 4.114 20 S -0.175 6.175 21 C -0.530 4.530 22 H 0.061 0.939 23 C 0.044 3.956 24 N -0.917 5.917 25 Si 0.916 3.084 26 H -0.264 1.264 27 H -0.256 1.256 28 H -0.236 1.236 29 H 0.089 0.911 30 H 0.030 0.970 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.118 0.882 34 H 0.044 0.956 35 H 0.045 0.955 36 H 0.423 0.577 37 H 0.157 0.843 38 H 0.145 0.855 39 H 0.170 0.830 40 H 0.215 0.785 41 H 0.415 0.585 42 H 0.106 0.894 43 H 0.115 0.885 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.712 -4.658 39.000 39.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.036 3.964 3 H 0.083 0.917 4 C -0.154 4.154 5 C -0.006 4.006 6 N -0.366 5.366 7 C 0.292 3.708 8 O -0.455 6.455 9 C -0.086 4.086 10 C -0.067 4.067 11 N -0.241 5.241 12 C -0.221 4.221 13 C -0.170 4.170 14 N -0.158 5.158 15 H 0.279 0.721 16 N -0.363 5.363 17 C 0.321 3.679 18 O -0.440 6.440 19 C -0.265 4.265 20 S 0.051 5.949 21 C -0.677 4.677 22 H 0.079 0.921 23 C -0.162 4.162 24 N -0.555 5.555 25 Si 0.738 3.262 26 H -0.189 1.189 27 H -0.181 1.181 28 H -0.160 1.160 29 H 0.108 0.892 30 H 0.050 0.950 31 H 0.095 0.905 32 H 0.124 0.876 33 H 0.136 0.864 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.261 0.739 37 H 0.174 0.826 38 H 0.162 0.838 39 H 0.187 0.813 40 H 0.232 0.768 41 H 0.252 0.748 42 H 0.124 0.876 43 H 0.133 0.867 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.783 -2.732 37.443 37.585 hybrid contribution 0.854 -0.904 0.076 1.246 sum -0.929 -3.636 37.519 37.707 Atomic orbital electron populations 1.22120 0.93711 1.03268 1.02388 1.21035 0.95057 0.96848 0.83459 0.91694 1.22003 0.92172 1.03640 0.97627 1.21240 0.95287 0.96409 0.87636 1.45692 1.06893 1.56958 1.27027 1.20904 0.82454 0.79967 0.87470 1.90820 1.56704 1.46859 1.51149 1.20087 0.85257 1.05234 0.98003 1.22874 0.96001 1.02161 0.85675 1.70167 1.02020 1.22825 1.29042 1.22729 0.95572 1.07244 0.96528 1.23256 0.87176 1.07393 0.99167 1.43162 1.06655 1.48500 1.17501 0.72145 1.45921 1.67292 1.14600 1.08533 1.19883 0.76756 0.86580 0.84642 1.90680 1.50801 1.17387 1.85164 1.23295 1.05848 1.02400 0.94917 1.84658 1.86896 1.18866 1.04475 1.22467 1.50288 0.98226 0.96763 0.92106 1.25597 0.93238 1.02411 0.94914 1.70021 1.44451 1.37771 1.03224 0.85845 0.80948 0.79787 0.79640 1.18907 1.18058 1.15981 0.89189 0.95048 0.90515 0.87603 0.86412 0.93756 0.93621 0.73872 0.82576 0.83761 0.81254 0.76808 0.74845 0.87590 0.86713 0.91339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 9.48 71.98 0.68 -1.76 16 2 C 0.14 2.49 2.57 44.99 0.12 2.61 16 3 H 0.06 1.55 7.58 -2.39 -0.02 1.53 16 4 C -0.12 -0.98 4.87 30.59 0.15 -0.83 16 5 C 0.12 1.89 5.56 86.38 0.48 2.37 16 6 N -0.71 -7.51 5.56 -463.07 -2.57 -10.08 16 7 C 0.51 9.14 7.82 87.66 0.69 9.83 16 8 O -0.58 -18.78 15.56 -3.04 -0.05 -18.83 16 9 C -0.04 -0.39 6.33 29.10 0.18 -0.20 16 10 C 0.20 3.50 6.95 138.13 0.96 4.46 16 11 N -0.52 -14.09 10.60 -188.13 -1.99 -16.09 16 12 C -0.07 -1.60 11.87 83.52 0.99 -0.61 16 13 C -0.04 -0.46 12.04 83.09 1.00 0.54 16 14 N -0.55 -5.91 6.15 -186.26 -1.15 -7.06 16 15 H 0.44 0.71 8.96 -92.71 -0.83 -0.12 16 16 N -0.71 -16.20 4.53 -442.52 -2.00 -18.21 16 17 C 0.54 18.84 7.81 87.66 0.68 19.52 16 18 O -0.56 -24.43 15.52 -3.04 -0.05 -24.48 16 19 C -0.11 -4.49 6.16 71.24 0.44 -4.05 16 20 S -0.18 -9.22 18.55 -56.49 -1.05 -10.27 16 21 C -0.53 -31.96 10.04 67.96 0.68 -31.28 16 22 H 0.06 3.87 8.03 -2.91 -0.02 3.85 16 23 C 0.04 2.65 5.50 84.86 0.47 3.11 16 24 N -0.92 -57.35 13.97 21.65 0.30 -57.05 16 25 Si 0.92 46.46 27.74 68.60 1.90 48.37 16 26 H -0.26 -13.18 7.11 99.48 0.71 -12.47 16 27 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 28 H -0.24 -11.91 6.74 99.48 0.67 -11.24 16 29 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.11 0.39 8.14 -2.38 -0.02 0.37 16 33 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.04 0.94 8.14 -2.39 -0.02 0.93 16 35 H 0.05 1.00 7.75 -2.39 -0.02 0.98 16 36 H 0.42 0.31 8.47 -92.71 -0.79 -0.47 16 37 H 0.16 -0.29 8.14 -2.38 -0.02 -0.31 16 38 H 0.14 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.17 3.24 8.06 -2.91 -0.02 3.22 16 40 H 0.22 0.94 8.06 -2.91 -0.02 0.91 16 41 H 0.41 6.98 8.60 -92.71 -0.80 6.18 16 42 H 0.11 4.00 8.14 -2.40 -0.02 3.99 16 43 H 0.11 4.11 8.14 -2.40 -0.02 4.09 16 44 H 0.28 16.00 8.31 -92.70 -0.77 15.23 16 Total: -1.00 -100.77 391.37 -0.53 -101.30 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -1.40 Total: 8.68 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: 7.52 Total: 3.71 kcal Atomic # 7 Polarization: -101.07 SS G_CDS: -7.41 Total: -108.48 kcal Atomic # 8 Polarization: -43.21 SS G_CDS: -0.09 Total: -43.31 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 1.90 Total: 48.37 kcal Atomic # 16 Polarization: -9.22 SS G_CDS: -1.05 Total: -10.27 kcal Total: -100.77 -0.53 -101.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078034235.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.680 kcal (2) G-P(sol) polarization free energy of solvation -100.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds