Wall clock time and date at job start Sat Apr 11 2020 05:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47134 * 2 1 4 4 C 1.50701 * 109.46882 * 120.00073 * 2 1 3 5 5 O 1.21277 * 120.00006 * 120.00136 * 4 2 1 6 6 N 1.34778 * 120.00003 * 300.00103 * 4 2 1 7 7 C 1.46500 * 119.99895 * 180.02562 * 6 4 2 8 8 H 1.08995 * 110.88700 * 37.42256 * 7 6 4 9 9 C 1.54906 * 111.00040 * 273.53973 * 7 6 4 10 10 N 1.47427 * 104.83302 * 204.87855 * 9 7 6 11 11 C 1.36934 * 125.64760 * 204.09847 * 10 9 7 12 12 H 1.07997 * 120.00239 * 351.28229 * 11 10 9 13 13 C 1.38817 * 119.99822 * 171.29239 * 11 10 9 14 14 N 1.31620 * 120.00015 * 164.58539 * 13 11 10 15 15 Si 1.86799 * 119.99835 * 344.30666 * 13 11 10 16 16 H 1.48494 * 109.47004 * 185.79088 * 15 13 11 17 17 H 1.48506 * 109.47205 * 305.78771 * 15 13 11 18 18 H 1.48497 * 109.47199 * 65.79030 * 15 13 11 19 19 C 1.47018 * 108.70103 * 24.35915 * 10 9 7 20 20 C 1.54334 * 107.26557 * 358.58635 * 19 10 9 21 21 H 1.08998 * 110.66693 * 96.52316 * 20 19 10 22 22 O 1.42900 * 110.84784 * 219.67305 * 20 19 10 23 23 C 1.50694 * 109.46940 * 239.99767 * 2 1 3 24 24 C 1.38231 * 119.99447 * 299.72802 * 23 2 1 25 25 C 1.38185 * 120.05413 * 179.72719 * 24 23 2 26 26 C 1.38491 * 120.02084 * 0.54776 * 25 24 23 27 27 F 1.35107 * 120.00821 * 179.74889 * 26 25 24 28 28 C 1.38394 * 119.98016 * 359.72730 * 26 25 24 29 29 C 1.38441 * 119.94495 * 359.97438 * 28 26 25 30 30 F 1.35108 * 120.00831 * 179.97438 * 29 28 26 31 31 H 1.09000 * 109.47691 * 60.00384 * 1 2 3 32 32 H 1.09007 * 109.47069 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47792 * 299.99951 * 1 2 3 34 34 H 0.96998 * 120.00232 * 359.97438 * 6 4 2 35 35 H 1.09006 * 110.36654 * 86.04165 * 9 7 6 36 36 H 1.08997 * 110.46763 * 323.76890 * 9 7 6 37 37 H 0.97003 * 119.99843 * 355.00480 * 14 13 11 38 38 H 1.09003 * 109.88444 * 118.12847 * 19 10 9 39 39 H 1.09007 * 109.88372 * 239.29491 * 19 10 9 40 40 H 0.96699 * 114.00067 * 293.69057 * 22 20 19 41 41 H 1.07998 * 119.96799 * 359.97438 * 24 23 2 42 42 H 1.07994 * 119.98784 * 180.25108 * 25 24 23 43 43 H 1.07995 * 120.02790 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1192 6 7 1.7066 -0.2500 2.4546 7 6 2.1954 -0.9403 3.6508 8 1 3.2115 -1.3050 3.5010 9 6 1.2445 -2.0952 4.0527 10 7 1.4671 -2.2817 5.4981 11 6 1.2300 -3.4333 6.2000 12 1 0.7175 -4.2581 5.7273 13 6 1.6484 -3.5406 7.5193 14 7 1.1701 -4.4979 8.2856 15 14 2.8959 -2.3309 8.2048 16 1 3.2791 -2.7409 9.5796 17 1 4.1015 -2.3186 7.3378 18 1 2.2988 -0.9718 8.2418 19 6 1.9797 -1.0245 6.0621 20 6 2.1125 -0.0205 4.8975 21 1 1.2354 0.6243 4.8436 22 8 3.3030 0.7585 5.0310 23 6 2.0323 -0.7104 -1.2304 24 6 1.7029 -2.0355 -1.4461 25 6 2.1581 -2.6865 -2.5768 26 6 2.9545 -2.0152 -3.4896 27 9 3.4036 -2.6535 -4.5924 28 6 3.2896 -0.6902 -3.2719 29 6 2.8279 -0.0372 -2.1418 30 9 3.1547 1.2561 -1.9278 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.1493 0.5389 2.5436 35 1 1.5010 -3.0045 3.5089 36 1 0.2076 -1.8194 3.8610 37 1 0.4725 -5.0834 7.9517 38 1 1.2825 -0.6409 6.8071 39 1 2.9559 -1.1931 6.5170 40 1 3.3019 1.3507 5.7955 41 1 1.0859 -2.5611 -0.7324 42 1 1.8968 -3.7206 -2.7463 43 1 3.9103 -0.1658 -3.9833 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078204950.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:57 Heat of formation + Delta-G solvation = -110.901168 kcal Electronic energy + Delta-G solvation = -29692.437271 eV Core-core repulsion = 25181.912272 eV Total energy + Delta-G solvation = -4510.524999 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.33089 -49.27347 -40.47248 -39.09687 -38.09528 -35.44410 -34.50849 -34.17191 -32.01950 -31.10793 -29.63313 -28.58362 -27.86178 -25.17525 -24.02932 -23.43762 -22.42972 -21.27176 -20.44502 -20.08367 -18.55618 -17.90220 -17.67200 -17.31395 -16.92921 -16.48887 -16.21934 -16.00898 -15.72448 -15.58006 -15.12858 -14.89944 -14.77254 -14.42454 -14.19385 -13.88008 -13.67319 -13.33229 -13.19921 -13.06660 -12.79768 -12.71606 -12.43490 -12.29300 -12.07970 -11.95083 -11.76456 -11.55375 -11.47746 -11.24697 -10.69481 -10.27802 -10.06346 -9.81359 -9.38318 -9.33838 -9.09509 -8.97988 -8.91526 -8.75412 -7.15111 -6.37632 -3.29785 0.61587 0.73994 2.59254 2.89590 3.23649 3.31190 3.47684 3.55238 3.66500 4.01389 4.13695 4.19639 4.24404 4.49530 4.56011 4.63552 4.75143 4.77752 4.81087 4.94807 5.12657 5.17621 5.23692 5.26313 5.39695 5.41818 5.49198 5.55141 5.61146 5.70825 5.73447 5.78608 5.80930 5.96211 6.24042 6.29343 6.34928 6.44704 6.48084 6.64153 7.47140 7.54022 7.71033 8.19581 8.26386 8.96109 9.46094 10.10791 11.12908 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.018653 B = 0.002697 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.743446 B =10379.389160 C =11068.289692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.072 4.072 3 H 0.110 0.890 4 C 0.519 3.481 5 O -0.526 6.526 6 N -0.713 5.713 7 C 0.138 3.862 8 H 0.106 0.894 9 C 0.132 3.868 10 N -0.606 5.606 11 C -0.324 4.324 12 H 0.082 0.918 13 C -0.020 4.020 14 N -0.925 5.925 15 Si 1.070 2.930 16 H -0.300 1.300 17 H -0.295 1.295 18 H -0.289 1.289 19 C 0.083 3.917 20 C 0.086 3.914 21 H 0.070 0.930 22 O -0.559 6.559 23 C -0.109 4.109 24 C -0.026 4.026 25 C -0.162 4.162 26 C 0.129 3.871 27 F -0.133 7.133 28 C -0.195 4.195 29 C 0.136 3.864 30 F -0.130 7.130 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.398 0.602 35 H 0.057 0.943 36 H 0.030 0.970 37 H 0.263 0.737 38 H 0.052 0.948 39 H 0.044 0.956 40 H 0.379 0.621 41 H 0.144 0.856 42 H 0.144 0.856 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.567 13.787 -21.603 25.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.094 4.094 3 H 0.128 0.872 4 C 0.304 3.696 5 O -0.401 6.401 6 N -0.364 5.364 7 C 0.032 3.968 8 H 0.124 0.876 9 C 0.005 3.995 10 N -0.335 5.335 11 C -0.451 4.451 12 H 0.100 0.900 13 C -0.220 4.220 14 N -0.566 5.566 15 Si 0.904 3.096 16 H -0.228 1.228 17 H -0.223 1.223 18 H -0.217 1.217 19 C -0.043 4.043 20 C 0.027 3.973 21 H 0.088 0.912 22 O -0.364 6.364 23 C -0.110 4.110 24 C -0.044 4.044 25 C -0.181 4.181 26 C 0.109 3.891 27 F -0.112 7.112 28 C -0.214 4.214 29 C 0.116 3.884 30 F -0.108 7.108 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.232 0.768 35 H 0.075 0.925 36 H 0.048 0.952 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.226 0.774 41 H 0.161 0.839 42 H 0.161 0.839 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.016 13.021 -20.860 24.590 hybrid contribution -1.051 0.462 -0.976 1.507 sum -1.035 13.483 -21.836 25.684 Atomic orbital electron populations 1.21818 0.91229 1.03557 1.03251 1.20211 0.98267 1.00674 0.90226 0.87158 1.20274 0.80382 0.84755 0.84207 1.90756 1.37100 1.25840 1.86434 1.45836 1.53489 1.31747 1.05318 1.22302 1.00409 0.92229 0.81827 0.87635 1.21903 0.95522 0.95888 0.86232 1.44616 1.77786 1.08576 1.02520 1.20187 1.36636 0.92551 0.95707 0.90044 1.25845 1.02199 1.01592 0.92370 1.70893 1.28702 1.20222 1.36775 0.83842 0.76383 0.74525 0.74820 1.22817 1.22327 1.21725 1.22696 0.98489 0.87762 0.95304 1.23065 0.87146 0.91792 0.95342 0.91228 1.86526 1.39894 1.58252 1.51707 1.19404 1.00418 0.95315 0.95871 1.20727 0.96404 0.92248 0.95024 1.21209 1.00351 1.01682 0.94848 1.17304 0.96850 0.90259 0.84676 1.91531 1.87370 1.81558 1.50691 1.20919 1.06094 0.94667 0.99768 1.17051 0.97346 0.79078 0.94881 1.91512 1.90853 1.33881 1.94601 0.91051 0.91361 0.91170 0.76750 0.92479 0.95192 0.92723 0.93048 0.93897 0.77419 0.83872 0.83851 0.83458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 8.90 37.16 0.33 -0.65 16 2 C -0.07 -0.69 2.88 -92.93 -0.27 -0.96 16 3 H 0.11 0.93 7.12 -51.93 -0.37 0.56 16 4 C 0.52 6.92 7.02 -10.98 -0.08 6.84 16 5 O -0.53 -9.19 14.83 5.56 0.08 -9.10 16 6 N -0.71 -9.06 5.12 -51.73 -0.27 -9.33 16 7 C 0.14 2.33 3.04 -65.78 -0.20 2.13 16 8 H 0.11 2.11 7.73 -51.93 -0.40 1.71 16 9 C 0.13 2.62 6.92 -2.53 -0.02 2.61 16 10 N -0.61 -14.63 3.33 -170.06 -0.57 -15.20 16 11 C -0.32 -9.23 10.56 -15.06 -0.16 -9.39 16 12 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 13 C -0.02 -0.60 5.50 -17.43 -0.10 -0.69 16 14 N -0.92 -28.90 13.70 55.49 0.76 -28.14 16 15 Si 1.07 26.55 24.54 -169.99 -4.17 22.38 16 16 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 17 H -0.29 -7.23 6.83 56.52 0.39 -6.85 16 18 H -0.29 -6.35 5.44 56.52 0.31 -6.04 16 19 C 0.08 1.73 4.41 -3.06 -0.01 1.72 16 20 C 0.09 1.37 3.95 -24.89 -0.10 1.28 16 21 H 0.07 0.90 7.99 -51.93 -0.42 0.48 16 22 O -0.56 -8.26 13.39 -35.23 -0.47 -8.73 16 23 C -0.11 -1.14 4.41 -104.55 -0.46 -1.60 16 24 C -0.03 -0.27 7.92 -39.60 -0.31 -0.58 16 25 C -0.16 -1.54 10.03 -39.51 -0.40 -1.94 16 26 C 0.13 1.28 7.30 -39.43 -0.29 0.99 16 27 F -0.13 -1.37 17.27 2.25 0.04 -1.33 16 28 C -0.19 -1.87 10.01 -39.45 -0.39 -2.27 16 29 C 0.14 1.42 7.24 -39.43 -0.29 1.13 16 30 F -0.13 -1.37 16.19 2.25 0.04 -1.33 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.50 7.40 -51.92 -0.38 0.12 16 33 H 0.07 0.40 7.57 -51.93 -0.39 0.01 16 34 H 0.40 3.72 7.93 -40.82 -0.32 3.40 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.26 8.10 8.73 -40.82 -0.36 7.74 16 38 H 0.05 1.08 6.82 -51.93 -0.35 0.73 16 39 H 0.04 0.98 3.64 -51.93 -0.19 0.79 16 40 H 0.38 3.86 9.12 45.56 0.42 4.28 16 41 H 0.14 1.40 7.51 -52.49 -0.39 1.01 16 42 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 43 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 358.02 15.07 5.40 5.40 Total: -1.00 -35.21 358.02 -6.51 -41.71 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -4.61 Total: 5.05 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -2.74 Total: -1.38 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: -0.07 Total: -52.66 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.39 Total: -17.84 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.08 Total: -2.66 kcal Atomic # 14 Polarization: 26.55 SS G_CDS: -4.17 Total: 22.38 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.21 -6.51 -41.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078204950.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.189 kcal (2) G-P(sol) polarization free energy of solvation -35.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds